Wall clock time and date at job start Sat Apr 11 2020 06:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37013 * 119.99800 * 2 1 4 4 H 1.07993 * 120.00197 * 188.67347 * 3 2 1 5 5 C 1.38938 * 120.00130 * 8.67791 * 3 2 1 6 6 N 1.31445 * 119.99994 * 8.88966 * 5 3 2 7 7 Si 1.86793 * 120.00211 * 188.89374 * 5 3 2 8 8 H 1.48500 * 109.47486 * 89.99838 * 7 5 3 9 9 H 1.48504 * 109.47284 * 209.99607 * 7 5 3 10 10 H 1.48499 * 109.47350 * 329.99528 * 7 5 3 11 11 C 1.34771 * 120.00530 * 179.97438 * 2 1 3 12 12 O 1.21707 * 120.00754 * 185.80414 * 11 2 1 13 13 C 1.46703 * 119.99689 * 5.80989 * 11 2 1 14 14 C 1.41659 * 126.56006 * 45.60093 * 13 11 2 15 15 N 1.30461 * 108.23270 * 180.02562 * 14 13 11 16 16 N 1.39492 * 109.15568 * 359.97438 * 15 14 13 17 17 C 1.35138 * 108.57400 * 0.02562 * 16 15 14 18 18 N 1.37867 * 125.24910 * 180.02562 * 17 16 15 19 19 C 1.47074 * 110.74597 * 18.12446 * 18 17 16 20 20 H 1.09008 * 109.45775 * 69.42911 * 19 18 17 21 21 C 1.52997 * 109.45933 * 189.39250 * 19 18 17 22 22 C 1.52999 * 117.50164 * 246.17919 * 21 19 18 23 23 C 1.52997 * 59.99980 * 252.50966 * 22 21 19 24 24 C 1.53223 * 109.53834 * 309.41409 * 19 18 17 25 25 C 1.46868 * 127.33436 * 180.02562 * 16 15 14 26 26 H 1.09001 * 109.79729 * 75.61303 * 25 16 15 27 27 C 1.53001 * 109.80323 * 314.80883 * 25 16 15 28 28 F 1.39899 * 109.46904 * 179.97438 * 27 25 16 29 29 F 1.39899 * 109.47054 * 299.99783 * 27 25 16 30 30 H 1.09006 * 109.47107 * 175.53704 * 1 2 3 31 31 H 1.08996 * 109.47373 * 295.53398 * 1 2 3 32 32 H 1.08995 * 109.47308 * 55.53848 * 1 2 3 33 33 H 0.96998 * 120.00554 * 180.02562 * 6 5 3 34 34 H 1.07992 * 125.88463 * 0.03829 * 14 13 11 35 35 H 1.00901 * 111.00145 * 254.35333 * 18 17 16 36 36 H 1.09001 * 115.54687 * 31.89053 * 21 19 18 37 37 H 1.08996 * 117.49954 * 359.97438 * 22 21 19 38 38 H 1.09000 * 117.49820 * 145.02158 * 22 21 19 39 39 H 1.08999 * 117.50032 * 252.50891 * 23 22 21 40 40 H 1.09001 * 117.49924 * 107.49068 * 23 22 21 41 41 H 1.09007 * 109.57541 * 187.10809 * 24 19 18 42 42 H 1.09000 * 109.57800 * 307.49338 * 24 19 18 43 43 H 1.08997 * 109.47045 * 60.00407 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1500 1.1866 0.0000 4 1 3.2207 1.1920 -0.1410 5 6 1.4672 2.3829 0.1815 6 7 0.1988 2.3700 0.5262 7 14 2.3517 4.0097 -0.0642 8 1 2.2190 4.4364 -1.4804 9 1 1.7501 5.0390 0.8212 10 1 3.7892 3.8473 0.2712 11 6 2.1390 -1.1671 0.0005 12 8 3.3513 -1.1698 0.1071 13 6 1.4111 -2.4344 -0.1275 14 6 0.3761 -2.7235 -1.0505 15 7 -0.0165 -3.9517 -0.8520 16 7 0.7293 -4.5084 0.1872 17 6 1.6049 -3.5808 0.6334 18 7 2.5107 -3.7685 1.6557 19 6 2.7129 -5.2018 1.9160 20 1 3.2468 -5.6512 1.0785 21 6 3.5329 -5.3767 3.1958 22 6 4.9344 -5.9753 3.0606 23 6 3.8037 -6.8054 3.6716 24 6 1.3537 -5.8891 2.0827 25 6 0.6170 -5.8659 0.7362 26 1 1.0765 -6.5798 0.0526 27 6 -0.8568 -6.2213 0.9427 28 9 -0.9556 -7.5153 1.4651 29 9 -1.4351 -5.3122 1.8351 30 1 -0.3634 -1.0246 -0.0800 31 1 -0.3634 0.4429 0.9272 32 1 -0.3634 0.5815 -0.8473 33 1 -0.2780 3.2052 0.6526 34 1 -0.0197 -2.0443 -1.7909 35 1 2.2167 -3.2870 2.4923 36 1 3.3831 -4.6122 3.9582 37 1 5.2722 -6.2450 2.0600 38 1 5.7071 -5.6046 3.7341 39 1 3.8325 -6.9808 4.7470 40 1 3.3977 -7.6208 3.0729 41 1 1.5028 -6.9215 2.3994 42 1 0.7647 -5.3574 2.8300 43 1 -1.3790 -6.1748 -0.0129 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292416579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:15 Heat of formation + Delta-G solvation = -21.741451 kcal Electronic energy + Delta-G solvation = -30751.469907 eV Core-core repulsion = 26277.103915 eV Total energy + Delta-G solvation = -4474.365992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.17703 -48.15444 -42.87254 -40.10907 -39.41475 -36.91325 -36.54615 -35.25359 -33.52498 -31.55974 -30.43860 -28.64044 -28.11651 -26.43773 -25.41142 -24.15840 -23.25001 -22.90021 -21.76209 -21.06742 -20.28494 -19.09357 -18.75659 -18.62356 -18.18752 -17.53908 -17.38701 -17.20563 -16.75388 -16.22822 -15.91784 -15.65699 -15.54111 -15.43680 -14.97715 -14.91677 -14.56727 -14.50284 -14.41096 -14.33980 -13.98625 -13.63829 -13.34149 -13.24469 -12.91436 -12.79731 -12.67055 -12.54007 -12.31019 -12.19534 -12.16864 -12.08308 -11.87552 -11.38306 -11.27531 -11.01932 -10.76693 -10.36893 -10.01884 -9.75672 -9.13494 -8.16934 -5.83714 0.50807 1.00933 1.26058 1.43958 1.48231 1.56934 2.24385 2.31804 2.39240 2.49543 2.78235 2.97521 3.07231 3.19862 3.28320 3.42850 3.63505 3.65928 3.74769 3.86833 3.93383 4.06100 4.08838 4.15287 4.28921 4.36839 4.38326 4.47196 4.59314 4.74861 4.77883 4.83758 5.05140 5.11277 5.18965 5.25959 5.28167 5.43532 5.49358 5.60243 5.74435 6.10277 6.16848 6.50244 6.59443 7.25099 7.57551 8.16390 8.73974 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.013744 B = 0.003594 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.693072 B = 7789.374511 C = 9161.949668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.457 5.457 3 C -0.334 4.334 4 H 0.076 0.924 5 C -0.006 4.006 6 N -0.899 5.899 7 Si 0.992 3.008 8 H -0.268 1.268 9 H -0.272 1.272 10 H -0.276 1.276 11 C 0.515 3.485 12 O -0.628 6.628 13 C -0.283 4.283 14 C 0.096 3.904 15 N -0.298 5.298 16 N -0.388 5.388 17 C 0.318 3.682 18 N -0.593 5.593 19 C 0.118 3.882 20 H 0.093 0.907 21 C -0.165 4.165 22 C -0.178 4.178 23 C -0.149 4.149 24 C -0.159 4.159 25 C 0.111 3.889 26 H 0.147 0.853 27 C 0.270 3.730 28 F -0.190 7.190 29 F -0.210 7.210 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.270 0.730 34 H 0.204 0.796 35 H 0.370 0.630 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.142 0.858 42 H 0.080 0.920 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.260 -21.552 4.305 22.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.175 5.175 3 C -0.462 4.462 4 H 0.094 0.906 5 C -0.206 4.206 6 N -0.539 5.539 7 Si 0.816 3.184 8 H -0.193 1.193 9 H -0.197 1.197 10 H -0.201 1.201 11 C 0.305 3.695 12 O -0.516 6.516 13 C -0.300 4.300 14 C -0.092 4.092 15 N -0.119 5.119 16 N -0.176 5.176 17 C 0.092 3.908 18 N -0.227 5.227 19 C 0.010 3.990 20 H 0.111 0.889 21 C -0.184 4.184 22 C -0.215 4.215 23 C -0.186 4.186 24 C -0.199 4.199 25 C 0.009 3.991 26 H 0.165 0.835 27 C 0.215 3.785 28 F -0.171 7.171 29 F -0.192 7.192 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.220 0.780 35 H 0.200 0.800 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.160 0.840 42 H 0.099 0.901 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.118 -22.356 3.778 22.772 hybrid contribution 0.138 1.797 0.572 1.891 sum -1.979 -20.559 4.350 21.107 Atomic orbital electron populations 1.21718 0.79121 0.98333 1.02665 1.43734 1.06845 1.04385 1.62500 1.19722 0.93557 0.83931 1.48953 0.90567 1.26037 0.96752 1.02183 0.95642 1.70223 1.09688 1.28233 1.45745 0.84944 0.77957 0.76923 0.78570 1.19346 1.19713 1.20065 1.17267 0.86356 0.82945 0.82927 1.90575 1.15745 1.87648 1.57661 1.19632 1.08447 0.95609 1.06303 1.24139 0.93533 0.93392 0.98090 1.76769 1.17615 1.10328 1.07147 1.48780 1.27537 1.11899 1.29382 1.19319 0.87697 0.88888 0.94860 1.57348 1.42089 1.13737 1.09508 1.21423 0.94726 0.84156 0.98688 0.88872 1.22081 0.99568 0.99282 0.97441 1.23074 0.91535 1.03904 1.02950 1.23113 1.01024 0.92167 1.02332 1.22785 0.96343 1.06773 0.93953 1.22917 0.96453 0.81178 0.98544 0.83515 1.22020 0.93296 0.71910 0.91259 1.93016 1.96848 1.38180 1.89049 1.92994 1.86156 1.67968 1.72064 0.92152 0.92106 0.93880 0.91959 0.77988 0.80043 0.87555 0.88740 0.88419 0.87145 0.86894 0.84044 0.90089 0.84209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.94 8.42 127.77 1.08 7.01 16 2 N -0.46 -24.88 3.02 -663.41 -2.01 -26.89 16 3 C -0.33 -19.59 9.51 84.05 0.80 -18.79 16 4 H 0.08 4.78 7.24 -2.91 -0.02 4.75 16 5 C -0.01 -0.31 5.37 84.92 0.46 0.15 16 6 N -0.90 -48.20 9.73 21.66 0.21 -47.98 16 7 Si 0.99 43.43 29.56 68.60 2.03 45.46 16 8 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 9 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 11 C 0.52 27.29 7.47 86.46 0.65 27.93 16 12 O -0.63 -37.99 16.73 -4.37 -0.07 -38.07 16 13 C -0.28 -11.90 5.10 -20.05 -0.10 -12.00 16 14 C 0.10 3.38 9.63 85.74 0.83 4.21 16 15 N -0.30 -9.27 12.23 -56.02 -0.69 -9.96 16 16 N -0.39 -10.95 3.70 -322.00 -1.19 -12.14 16 17 C 0.32 11.10 7.12 132.57 0.94 12.04 16 18 N -0.59 -18.47 6.53 -322.03 -2.10 -20.57 16 19 C 0.12 2.43 2.75 44.96 0.12 2.55 16 20 H 0.09 1.97 7.87 -2.38 -0.02 1.95 16 21 C -0.17 -2.83 5.38 -10.80 -0.06 -2.89 16 22 C -0.18 -2.81 10.18 30.59 0.31 -2.50 16 23 C -0.15 -1.66 9.63 30.59 0.29 -1.36 16 24 C -0.16 -2.54 4.50 30.84 0.14 -2.40 16 25 C 0.11 2.05 3.44 45.09 0.16 2.21 16 26 H 0.15 1.94 8.14 -2.39 -0.02 1.92 16 27 C 0.27 4.77 4.89 71.98 0.35 5.12 16 28 F -0.19 -3.02 17.11 44.97 0.77 -2.25 16 29 F -0.21 -5.12 16.51 44.97 0.74 -4.37 16 30 H 0.06 2.48 4.40 -2.38 -0.01 2.47 16 31 H 0.06 3.13 6.57 -2.39 -0.02 3.12 16 32 H 0.04 2.07 7.61 -2.39 -0.02 2.05 16 33 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 34 H 0.20 6.41 7.67 -2.91 -0.02 6.39 16 35 H 0.37 11.32 8.53 -89.69 -0.76 10.56 16 36 H 0.11 1.97 8.01 -2.39 -0.02 1.95 16 37 H 0.09 1.53 8.04 -2.39 -0.02 1.52 16 38 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.11 0.88 7.42 -2.39 -0.02 0.86 16 41 H 0.14 1.35 6.91 -2.38 -0.02 1.34 16 42 H 0.08 1.50 7.45 -2.39 -0.02 1.49 16 43 H 0.14 2.15 8.13 -2.39 -0.02 2.13 16 Total: -1.00 -74.40 358.39 3.96 -70.44 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.31 Total: 25.07 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: 5.96 Total: 21.27 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -5.77 Total: -117.54 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -0.07 Total: -38.07 kcal Atomic # 9 Polarization: -8.13 SS G_CDS: 1.51 Total: -6.62 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -74.40 3.96 -70.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292416579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.695 kcal (2) G-P(sol) polarization free energy of solvation -74.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds