Wall clock time and date at job start Sat Apr 11 2020 06:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45201 * 109.47128 * 2 1 4 4 C 1.34237 * 116.99795 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00014 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99699 * 179.97438 * 4 3 2 7 7 C 1.53002 * 109.47285 * 60.00699 * 6 4 3 8 8 C 1.52998 * 109.47361 * 300.00464 * 6 4 3 9 9 O 1.42904 * 109.46943 * 180.02562 * 6 4 3 10 10 N 1.41598 * 113.99949 * 180.02562 * 9 6 4 11 11 C 1.34779 * 119.99627 * 179.97438 * 10 9 6 12 12 O 1.21589 * 120.00349 * 359.97438 * 11 10 9 13 13 N 1.34787 * 119.99663 * 179.97438 * 11 10 9 14 14 C 1.40196 * 119.99563 * 179.97438 * 13 11 10 15 15 C 1.40395 * 125.97533 * 359.97438 * 14 13 11 16 16 C 1.35243 * 107.86535 * 179.71691 * 15 14 13 17 17 N 1.34960 * 107.86064 * 0.42509 * 16 15 14 18 18 C 1.46500 * 125.97985 * 179.83521 * 17 16 15 19 19 C 1.50706 * 109.47299 * 124.71356 * 18 17 16 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 N 1.31213 * 125.96849 * 179.97438 * 14 13 11 28 28 H 1.08997 * 109.46980 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46987 * 299.99936 * 1 2 3 30 30 H 1.09003 * 109.46942 * 59.99479 * 1 2 3 31 31 H 1.08998 * 109.46987 * 240.00064 * 2 1 3 32 32 H 1.08993 * 109.47068 * 120.00439 * 2 1 3 33 33 H 1.08999 * 109.47286 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.46575 * 299.99767 * 7 6 4 35 35 H 1.09001 * 109.47068 * 59.99055 * 7 6 4 36 36 H 1.09003 * 109.47007 * 299.99774 * 8 6 4 37 37 H 1.08992 * 109.47287 * 60.00071 * 8 6 4 38 38 H 1.09006 * 109.46944 * 180.02562 * 8 6 4 39 39 H 0.96998 * 120.00271 * 359.97438 * 10 9 6 40 40 H 0.96998 * 119.99666 * 359.97438 * 13 11 10 41 41 H 1.08003 * 126.06887 * 0.02562 * 15 14 13 42 42 H 1.08007 * 126.06985 * 180.26350 * 16 15 14 43 43 H 1.09004 * 109.47078 * 4.72118 * 18 17 16 44 44 H 1.08993 * 109.47364 * 244.71890 * 18 17 16 45 45 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 6 3.4488 3.6850 1.2486 8 6 3.4498 3.6836 -1.2498 9 8 5.3479 2.8625 0.0001 10 7 5.9907 4.1242 0.0002 11 6 7.3367 4.1946 0.0008 12 8 7.9989 3.1749 0.0018 13 7 7.9486 5.3956 0.0004 14 6 9.3486 5.4688 0.0016 15 6 10.2316 4.3773 0.0038 16 6 11.4933 4.8642 -0.0020 17 7 11.4170 6.2117 0.0019 18 6 12.5519 7.1380 0.0013 19 6 12.4263 8.0857 -1.1637 20 1 11.5849 8.0061 -1.8362 21 6 13.3853 9.0542 -1.3712 22 7 14.4071 9.1545 -0.5492 23 14 13.2293 10.2293 -2.8149 24 1 14.3766 11.1721 -2.8120 25 1 13.2261 9.4572 -4.0834 26 1 11.9610 10.9927 -2.6968 27 7 10.0628 6.5696 0.0009 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8657 4.6921 1.2485 34 1 2.3603 3.7420 1.2481 35 1 3.7843 3.1533 2.1391 36 1 3.7861 3.1510 -2.1394 37 1 2.3613 3.7407 -1.2503 38 1 3.8668 4.6908 -1.2504 39 1 5.4625 4.9377 -0.0002 40 1 7.4203 6.2090 -0.0007 41 1 9.9528 3.3339 0.0045 42 1 12.4009 4.2787 -0.0060 43 1 13.4808 6.5746 -0.0873 44 1 12.5584 7.7053 0.9320 45 1 14.4881 8.5446 0.2006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001310329849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:22 Heat of formation + Delta-G solvation = -38.978738 kcal Electronic energy + Delta-G solvation = -28838.586264 eV Core-core repulsion = 24474.560323 eV Total energy + Delta-G solvation = -4364.025942 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.34221 -42.02097 -40.94724 -39.34755 -37.79030 -36.42488 -35.59683 -34.85760 -33.23197 -32.45087 -31.82037 -30.98516 -28.57587 -28.12462 -25.99292 -25.14511 -23.91203 -23.27296 -22.24782 -22.06842 -21.43204 -19.81949 -19.22590 -18.87885 -18.56877 -17.87923 -17.83482 -17.72656 -17.06341 -16.67285 -16.18799 -15.95720 -15.75120 -15.54693 -15.19712 -15.03157 -14.93192 -14.83864 -14.19333 -13.92502 -13.70400 -13.69655 -13.54577 -13.49936 -13.20802 -13.09491 -13.02326 -12.98312 -12.59576 -12.53959 -12.27333 -12.05149 -11.93374 -11.75047 -11.63143 -11.54121 -11.29707 -10.99605 -10.66728 -10.30115 -9.82922 -9.18167 -8.74663 -6.52908 -0.15516 0.84762 0.97591 1.27400 1.53457 1.57975 1.60145 1.76565 1.82605 2.26901 2.50539 2.63663 3.04274 3.13405 3.37756 3.40907 3.54863 3.85220 3.95767 4.01380 4.14275 4.29487 4.46244 4.46569 4.54922 4.58585 4.61992 4.62956 4.76567 4.78783 4.85754 4.91150 5.01162 5.06413 5.06492 5.09376 5.24817 5.31696 5.58128 5.70525 5.82198 5.94628 6.28908 6.43125 6.44105 6.53958 6.99819 7.22914 7.28646 8.61452 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029283 B = 0.001768 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.960414 B =15831.744104 C =16345.630050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 O -0.338 6.338 4 C 0.484 3.516 5 O -0.527 6.527 6 C 0.088 3.912 7 C -0.170 4.170 8 C -0.170 4.170 9 O -0.124 6.124 10 N -0.580 5.580 11 C 0.733 3.267 12 O -0.588 6.588 13 N -0.618 5.618 14 C 0.291 3.709 15 C -0.292 4.292 16 C 0.058 3.942 17 N -0.342 5.342 18 C 0.259 3.741 19 C -0.622 4.622 20 H 0.047 0.953 21 C -0.019 4.019 22 N -0.924 5.924 23 Si 1.120 2.880 24 H -0.277 1.277 25 H -0.272 1.272 26 H -0.273 1.273 27 N -0.338 5.338 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.429 0.571 40 H 0.428 0.572 41 H 0.165 0.835 42 H 0.201 0.799 43 H 0.054 0.946 44 H 0.019 0.981 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.012 -12.219 1.604 34.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.021 4.021 3 O -0.254 6.254 4 C 0.325 3.675 5 O -0.415 6.415 6 C 0.047 3.953 7 C -0.227 4.227 8 C -0.227 4.227 9 O -0.129 6.129 10 N -0.287 5.287 11 C 0.433 3.567 12 O -0.463 6.463 13 N -0.274 5.274 14 C 0.036 3.964 15 C -0.324 4.324 16 C -0.090 4.090 17 N -0.124 5.124 18 C 0.140 3.860 19 C -0.660 4.660 20 H 0.066 0.934 21 C -0.218 4.218 22 N -0.560 5.560 23 Si 0.941 3.059 24 H -0.202 1.202 25 H -0.198 1.198 26 H -0.199 1.199 27 N -0.168 5.168 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.131 0.869 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.131 0.869 38 H 0.117 0.883 39 H 0.274 0.726 40 H 0.266 0.734 41 H 0.182 0.818 42 H 0.218 0.782 43 H 0.071 0.929 44 H 0.036 0.964 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -30.413 -11.064 0.879 32.375 hybrid contribution -0.889 -1.912 0.999 2.334 sum -31.302 -12.976 1.878 33.937 Atomic orbital electron populations 1.21833 0.89551 1.04567 1.04178 1.23432 0.97448 0.78481 1.02780 1.86444 1.21308 1.34248 1.83419 1.22879 0.81797 0.90711 0.72141 1.90757 1.61425 1.43923 1.45376 1.21658 0.80773 0.90936 1.01906 1.22441 1.05223 1.01301 0.93711 1.22444 1.05234 1.01320 0.93729 1.90768 1.17941 1.06831 1.97371 1.45335 1.01992 0.99578 1.81792 1.14917 0.80577 0.83053 0.78194 1.90897 1.63877 1.34819 1.56687 1.40772 1.01917 1.07979 1.76720 1.18875 0.83925 0.92555 1.01070 1.21702 0.90224 1.00592 1.19844 1.23134 1.00925 0.84314 1.00592 1.48560 1.03885 1.05430 1.54509 1.19439 0.80931 0.88136 0.97503 1.22306 1.11832 1.18872 1.12961 0.93427 1.27265 0.91531 0.99232 1.03817 1.70946 1.30701 1.38868 1.15509 0.82875 0.76685 0.74271 0.72069 1.20160 1.19760 1.19872 1.77266 0.88412 1.20717 1.30449 0.88268 0.90755 0.90784 0.91313 0.91279 0.88265 0.86899 0.91874 0.91944 0.86886 0.88284 0.72586 0.73354 0.81779 0.78191 0.92868 0.96355 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 10.29 71.98 0.74 0.08 16 2 C 0.05 0.59 6.19 71.98 0.45 1.03 16 3 O -0.34 -4.74 10.03 -51.48 -0.52 -5.26 16 4 C 0.48 9.69 6.63 71.23 0.47 10.16 16 5 O -0.53 -15.53 16.25 28.39 0.46 -15.06 16 6 C 0.09 1.36 1.06 -11.54 -0.01 1.35 16 7 C -0.17 -1.49 8.45 71.98 0.61 -0.88 16 8 C -0.17 -1.54 8.45 71.98 0.61 -0.93 16 9 O -0.12 -3.09 10.16 -11.16 -0.11 -3.21 16 10 N -0.58 -11.76 5.60 -184.73 -1.03 -12.80 16 11 C 0.73 21.88 8.68 179.05 1.55 23.43 16 12 O -0.59 -23.40 13.88 13.36 0.19 -23.22 16 13 N -0.62 -17.85 5.46 -321.22 -1.75 -19.60 16 14 C 0.29 11.50 8.11 133.31 1.08 12.58 16 15 C -0.29 -11.75 9.61 22.10 0.21 -11.54 16 16 C 0.06 2.33 11.44 83.52 0.96 3.29 16 17 N -0.34 -15.97 3.67 -351.84 -1.29 -17.26 16 18 C 0.26 13.24 5.57 85.64 0.48 13.72 16 19 C -0.62 -35.04 9.24 25.60 0.24 -34.81 16 20 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 21 C -0.02 -1.04 5.46 84.65 0.46 -0.58 16 22 N -0.92 -53.77 13.65 21.45 0.29 -53.48 16 23 Si 1.12 49.17 29.90 68.60 2.05 51.22 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 N -0.34 -15.40 12.42 -54.44 -0.68 -16.07 16 28 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.07 0.28 8.14 -2.39 -0.02 0.27 16 30 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.07 0.85 8.13 -2.39 -0.02 0.83 16 32 H 0.07 0.85 8.13 -2.39 -0.02 0.83 16 33 H 0.10 0.44 6.96 -2.39 -0.02 0.43 16 34 H 0.11 0.47 8.11 -2.39 -0.02 0.45 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.11 0.49 8.11 -2.39 -0.02 0.47 16 38 H 0.10 0.47 6.96 -2.38 -0.02 0.46 16 39 H 0.43 4.30 6.44 -92.71 -0.60 3.71 16 40 H 0.43 8.77 8.84 -92.71 -0.82 7.96 16 41 H 0.16 6.65 5.91 -2.91 -0.02 6.63 16 42 H 0.20 6.34 8.06 -2.91 -0.02 6.32 16 43 H 0.05 2.62 7.94 -2.39 -0.02 2.60 16 44 H 0.02 0.99 8.00 -2.39 -0.02 0.97 16 45 H 0.26 15.01 7.22 -92.71 -0.67 14.34 16 Total: -1.00 -84.52 388.84 5.17 -79.35 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -0.27 Total: 18.51 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 7.84 Total: 16.88 kcal Atomic # 7 Polarization: -114.76 SS G_CDS: -4.46 Total: -119.22 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: 0.02 Total: -46.75 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 2.05 Total: 51.22 kcal Total: -84.52 5.17 -79.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310329849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.366 kcal (2) G-P(sol) polarization free energy of solvation -84.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds