Wall clock time and date at job start Sat Apr 11 2020 06:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36941 * 120.00124 * 2 1 4 4 H 1.07995 * 119.99569 * 205.86836 * 3 2 1 5 5 C 1.38807 * 119.99788 * 25.86774 * 3 2 1 6 6 N 1.31613 * 120.00364 * 8.66392 * 5 3 2 7 7 Si 1.86799 * 119.99698 * 188.65960 * 5 3 2 8 8 H 1.48495 * 109.47273 * 5.00460 * 7 5 3 9 9 H 1.48500 * 109.47314 * 125.00459 * 7 5 3 10 10 H 1.48499 * 109.47289 * 245.00258 * 7 5 3 11 11 C 1.46502 * 120.00031 * 179.97438 * 2 1 3 12 12 C 1.52994 * 109.47379 * 97.31269 * 11 2 1 13 13 H 1.08998 * 109.70389 * 56.36862 * 12 11 2 14 14 C 1.52772 * 109.50818 * 296.25588 * 12 11 2 15 15 C 1.53040 * 109.38041 * 185.70585 * 14 12 11 16 16 C 1.53035 * 109.53847 * 61.23925 * 15 14 12 17 17 C 1.53188 * 109.31779 * 298.63321 * 16 15 14 18 18 N 1.46921 * 109.58979 * 176.72920 * 12 11 2 19 19 C 1.34781 * 120.62844 * 353.41839 * 18 12 11 20 20 O 1.21570 * 119.99868 * 6.71617 * 19 18 12 21 21 C 1.47712 * 119.99740 * 186.71436 * 19 18 12 22 22 C 1.41508 * 126.51045 * 183.94743 * 21 19 18 23 23 C 1.35515 * 105.48285 * 179.77850 * 22 21 19 24 24 Cl 1.73599 * 126.39746 * 180.22631 * 23 22 21 25 25 N 1.35068 * 107.19517 * 0.22252 * 23 22 21 26 26 C 1.46496 * 124.87982 * 180.02562 * 25 23 22 27 27 N 1.28456 * 110.23533 * 0.02562 * 25 23 22 28 28 H 1.08995 * 109.47630 * 275.83028 * 1 2 3 29 29 H 1.09001 * 109.46838 * 35.83110 * 1 2 3 30 30 H 1.08998 * 109.47097 * 155.82652 * 1 2 3 31 31 H 0.97001 * 120.00365 * 179.97438 * 6 5 3 32 32 H 1.09005 * 109.46756 * 337.30865 * 11 2 1 33 33 H 1.09003 * 109.47350 * 217.31322 * 11 2 1 34 34 H 1.09003 * 109.55956 * 65.66899 * 14 12 11 35 35 H 1.09002 * 109.38471 * 305.63184 * 14 12 11 36 36 H 1.09000 * 109.45684 * 301.21565 * 15 14 12 37 37 H 1.09000 * 109.44722 * 181.25663 * 15 14 12 38 38 H 1.09007 * 109.49784 * 178.68133 * 16 15 14 39 39 H 1.08999 * 109.50051 * 58.58535 * 16 15 14 40 40 H 1.09007 * 109.58608 * 294.85092 * 17 16 15 41 41 H 1.08997 * 109.70925 * 174.49323 * 17 16 15 42 42 H 1.07998 * 127.25792 * 0.03679 * 22 21 19 43 43 H 1.09000 * 109.47173 * 90.00166 * 26 25 23 44 44 H 1.09005 * 109.47227 * 210.00354 * 26 25 23 45 45 H 1.09005 * 109.47401 * 330.00806 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1485 1.2327 -0.4081 5 6 1.5599 2.3278 0.5245 6 7 0.4183 2.2401 1.1734 7 14 2.3868 3.9889 0.3093 8 1 3.5857 3.8371 -0.5536 9 1 1.4363 4.9364 -0.3264 10 1 2.7956 4.5141 1.6368 11 6 2.1975 -1.2687 0.0006 12 6 2.6115 -1.6193 -1.4300 13 1 3.1978 -0.8037 -1.8532 14 6 1.3633 -1.8432 -2.2820 15 6 1.7780 -2.3315 -3.6718 16 6 2.5238 -3.6619 -3.5454 17 6 3.7897 -3.4557 -2.7079 18 7 3.4133 -2.8504 -1.4231 19 6 3.7916 -3.4170 -0.2601 20 8 3.3696 -2.9817 0.7937 21 6 4.7188 -4.5668 -0.2660 22 6 5.1429 -5.3121 0.8597 23 6 5.9777 -6.2614 0.3713 24 17 6.8041 -7.4790 1.2923 25 7 6.0464 -6.0832 -0.9658 26 6 6.8445 -6.9034 -1.8803 27 7 5.3112 -5.0913 -1.3201 28 1 -0.3634 0.1044 1.0223 29 1 -0.3633 0.8332 -0.6016 30 1 -0.3633 -0.9375 -0.4208 31 1 0.0063 3.0380 1.5403 32 1 1.5580 -2.0573 0.3974 33 1 3.0870 -1.1745 0.6235 34 1 0.8120 -0.9074 -2.3746 35 1 0.7306 -2.5928 -1.8067 36 1 2.4303 -1.5923 -4.1367 37 1 0.8896 -2.4703 -4.2878 38 1 2.7983 -4.0208 -4.5374 39 1 1.8806 -4.3947 -3.0581 40 1 4.4742 -2.7928 -3.2374 41 1 4.2743 -4.4159 -2.5314 42 1 4.8579 -5.1595 1.8901 43 1 6.2451 -7.7427 -2.2329 44 1 7.1585 -6.2984 -2.7310 45 1 7.7241 -7.2794 -1.3576 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316805415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:25 Heat of formation + Delta-G solvation = 96.153379 kcal Electronic energy + Delta-G solvation = -28401.355880 eV Core-core repulsion = 24483.898871 eV Total energy + Delta-G solvation = -3917.457009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -43.00299 -39.97721 -37.26884 -37.06919 -35.36720 -33.92001 -32.60494 -31.92882 -30.74777 -29.89765 -27.96329 -26.46180 -25.59908 -24.44980 -23.26714 -22.08042 -21.76595 -20.66342 -20.16315 -19.10006 -17.57509 -16.84521 -16.80175 -16.14222 -15.61159 -15.00391 -14.72401 -14.54467 -14.40250 -14.11710 -13.88285 -13.65542 -13.42498 -13.17616 -13.06901 -12.96021 -12.74956 -12.53858 -12.39653 -12.34995 -11.93560 -11.51861 -11.27341 -11.05862 -10.84863 -10.69531 -10.64150 -10.55185 -10.30756 -10.06138 -9.93794 -9.78418 -9.72208 -9.35778 -9.25958 -8.90961 -8.40395 -8.08302 -6.49298 -5.55500 -3.04259 1.14327 1.28459 1.76928 2.18375 3.26530 3.46395 3.52103 3.53228 3.55344 3.96279 4.54066 4.59870 4.63947 4.83237 4.88448 5.00474 5.10509 5.11772 5.24138 5.37684 5.49141 5.58853 5.64052 5.72449 5.82068 5.99049 6.03646 6.05416 6.08355 6.20817 6.24103 6.34587 6.49379 6.55544 6.70245 6.90395 7.00570 7.07952 7.40739 7.49330 7.58136 7.78117 7.93464 7.96365 8.46022 8.63045 9.42631 10.06529 10.57059 11.48643 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015338 B = 0.003035 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.075777 B = 9223.424465 C =10166.157103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.602 5.602 3 C -0.248 4.248 4 H 0.065 0.935 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.901 3.099 8 H -0.279 1.279 9 H -0.291 1.291 10 H -0.291 1.291 11 C 0.162 3.838 12 C 0.123 3.877 13 H 0.072 0.928 14 C -0.120 4.120 15 C -0.121 4.121 16 C -0.130 4.130 17 C 0.086 3.914 18 N -0.590 5.590 19 C 0.592 3.408 20 O -0.507 6.507 21 C 0.009 3.991 22 C -0.150 4.150 23 C 0.049 3.951 24 Cl -0.001 7.001 25 N -0.282 5.282 26 C 0.080 3.920 27 N -0.244 5.244 28 H 0.031 0.969 29 H 0.035 0.965 30 H -0.003 1.003 31 H 0.250 0.750 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.121 0.879 42 H 0.175 0.825 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.141 -22.743 -9.144 27.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.326 5.326 3 C -0.378 4.378 4 H 0.083 0.917 5 C -0.196 4.196 6 N -0.554 5.554 7 Si 0.731 3.269 8 H -0.204 1.204 9 H -0.218 1.218 10 H -0.218 1.218 11 C 0.035 3.965 12 C 0.019 3.981 13 H 0.090 0.910 14 C -0.159 4.159 15 C -0.159 4.159 16 C -0.169 4.169 17 C -0.038 4.038 18 N -0.323 5.323 19 C 0.377 3.623 20 O -0.380 6.380 21 C -0.151 4.151 22 C -0.179 4.179 23 C -0.102 4.102 24 Cl 0.027 6.973 25 N -0.071 5.071 26 C -0.060 4.060 27 N -0.080 5.080 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.015 0.985 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.138 0.862 42 H 0.192 0.808 43 H 0.108 0.892 44 H 0.122 0.878 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.049 -22.436 -9.624 27.224 hybrid contribution 0.527 0.664 0.554 1.013 sum 12.576 -21.772 -9.070 26.729 Atomic orbital electron populations 1.20822 0.83101 0.94820 0.99474 1.44116 1.01707 1.01025 1.85738 1.19191 0.99571 0.86359 1.32682 0.91741 1.25082 0.97757 0.98536 0.98266 1.70060 1.18727 1.27263 1.39361 0.86236 0.78667 0.84585 0.77369 1.20448 1.21831 1.21768 1.21405 0.97297 0.87666 0.90180 1.22373 0.90644 0.83018 1.02087 0.91002 1.21830 0.97843 1.02108 0.94080 1.21566 0.99779 0.96566 0.97972 1.21889 0.97271 0.98249 0.99471 1.22397 0.96525 1.00895 0.83993 1.48111 1.52581 1.26519 1.05060 1.16972 0.80036 0.80933 0.84392 1.90935 1.54897 1.60717 1.31492 1.22215 1.02551 1.00464 0.89849 1.21509 0.99906 0.95259 1.01219 1.21914 1.04767 0.98839 0.84645 1.98401 1.76942 1.52143 1.69794 1.45696 1.33702 1.23013 1.04721 1.22270 0.95056 0.94880 0.93777 1.73587 1.07894 1.01201 1.25307 0.95106 0.94632 0.98467 0.94010 0.93248 0.91173 0.89714 0.92477 0.92063 0.92331 0.91472 0.91999 0.92018 0.86246 0.80804 0.89233 0.87848 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.21 7.99 59.84 0.48 4.69 16 2 N -0.60 -16.01 2.61 -181.13 -0.47 -16.48 16 3 C -0.25 -7.12 9.63 -15.06 -0.14 -7.27 16 4 H 0.06 1.83 7.84 -52.49 -0.41 1.41 16 5 C 0.00 0.04 5.19 -17.43 -0.09 -0.05 16 6 N -0.91 -27.63 10.65 55.49 0.59 -27.04 16 7 Si 0.90 22.68 29.56 -169.99 -5.03 17.65 16 8 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 9 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 10 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 11 C 0.16 3.77 3.51 -4.04 -0.01 3.76 16 12 C 0.12 2.36 3.11 -67.82 -0.21 2.15 16 13 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 14 C -0.12 -2.06 4.31 -26.83 -0.12 -2.18 16 15 C -0.12 -1.63 5.89 -26.69 -0.16 -1.79 16 16 C -0.13 -1.54 6.08 -26.62 -0.16 -1.70 16 17 C 0.09 1.11 6.14 -3.71 -0.02 1.09 16 18 N -0.59 -9.78 2.98 -166.63 -0.50 -10.28 16 19 C 0.59 10.40 7.60 -12.39 -0.09 10.31 16 20 O -0.51 -10.61 12.35 5.30 0.07 -10.55 16 21 C 0.01 0.13 6.86 -82.76 -0.57 -0.44 16 22 C -0.15 -1.90 10.80 -39.31 -0.42 -2.33 16 23 C 0.05 0.50 7.44 -17.10 -0.13 0.37 16 24 Cl 0.00 -0.01 28.67 -51.86 -1.49 -1.49 16 25 N -0.28 -2.67 3.70 -64.87 -0.24 -2.91 16 26 C 0.08 0.36 11.14 59.84 0.67 1.03 16 27 N -0.24 -2.92 8.40 33.42 0.28 -2.64 16 28 H 0.03 0.87 7.25 -51.93 -0.38 0.50 16 29 H 0.03 0.96 7.46 -51.93 -0.39 0.57 16 30 H 0.00 -0.07 7.18 -51.93 -0.37 -0.45 16 31 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.05 1.18 7.08 -51.93 -0.37 0.81 16 33 H 0.07 1.80 6.18 -51.93 -0.32 1.48 16 34 H 0.08 1.62 7.05 -51.93 -0.37 1.26 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 41 H 0.12 1.45 4.10 -79.47 -0.33 1.12 16 42 H 0.17 2.10 8.06 -52.49 -0.42 1.67 16 43 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.10 0.29 7.71 -51.93 -0.40 -0.11 16 LS Contribution 367.42 15.07 5.54 5.54 Total: -1.00 -33.69 367.42 -8.93 -42.62 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -6.69 Total: -2.07 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -0.99 Total: 7.65 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.34 Total: -59.35 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.07 Total: -10.55 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.03 Total: 17.65 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -1.49 Total: -1.49 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.69 -8.93 -42.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316805415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.771 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds