Wall clock time and date at job start Sat Apr 11 2020 06:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36941 * 120.00124 * 2 1 4 4 H 1.07995 * 119.99569 * 205.86836 * 3 2 1 5 5 C 1.38807 * 119.99788 * 25.86774 * 3 2 1 6 6 N 1.31613 * 120.00364 * 8.66392 * 5 3 2 7 7 Si 1.86799 * 119.99698 * 188.65960 * 5 3 2 8 8 H 1.48495 * 109.47273 * 5.00460 * 7 5 3 9 9 H 1.48500 * 109.47314 * 125.00459 * 7 5 3 10 10 H 1.48499 * 109.47289 * 245.00258 * 7 5 3 11 11 C 1.46502 * 120.00031 * 179.97438 * 2 1 3 12 12 C 1.52994 * 109.47379 * 97.31269 * 11 2 1 13 13 H 1.08998 * 109.70389 * 56.36862 * 12 11 2 14 14 C 1.52772 * 109.50818 * 296.25588 * 12 11 2 15 15 C 1.53040 * 109.38041 * 185.70585 * 14 12 11 16 16 C 1.53035 * 109.53847 * 61.23925 * 15 14 12 17 17 C 1.53188 * 109.31779 * 298.63321 * 16 15 14 18 18 N 1.46921 * 109.58979 * 176.72920 * 12 11 2 19 19 C 1.34781 * 120.62844 * 353.41839 * 18 12 11 20 20 O 1.21570 * 119.99868 * 6.71617 * 19 18 12 21 21 C 1.47712 * 119.99740 * 186.71436 * 19 18 12 22 22 C 1.41508 * 126.51045 * 183.94743 * 21 19 18 23 23 C 1.35515 * 105.48285 * 179.77850 * 22 21 19 24 24 Cl 1.73599 * 126.39746 * 180.22631 * 23 22 21 25 25 N 1.35068 * 107.19517 * 0.22252 * 23 22 21 26 26 C 1.46496 * 124.87982 * 180.02562 * 25 23 22 27 27 N 1.28456 * 110.23533 * 0.02562 * 25 23 22 28 28 H 1.08995 * 109.47630 * 275.83028 * 1 2 3 29 29 H 1.09001 * 109.46838 * 35.83110 * 1 2 3 30 30 H 1.08998 * 109.47097 * 155.82652 * 1 2 3 31 31 H 0.97001 * 120.00365 * 179.97438 * 6 5 3 32 32 H 1.09005 * 109.46756 * 337.30865 * 11 2 1 33 33 H 1.09003 * 109.47350 * 217.31322 * 11 2 1 34 34 H 1.09003 * 109.55956 * 65.66899 * 14 12 11 35 35 H 1.09002 * 109.38471 * 305.63184 * 14 12 11 36 36 H 1.09000 * 109.45684 * 301.21565 * 15 14 12 37 37 H 1.09000 * 109.44722 * 181.25663 * 15 14 12 38 38 H 1.09007 * 109.49784 * 178.68133 * 16 15 14 39 39 H 1.08999 * 109.50051 * 58.58535 * 16 15 14 40 40 H 1.09007 * 109.58608 * 294.85092 * 17 16 15 41 41 H 1.08997 * 109.70925 * 174.49323 * 17 16 15 42 42 H 1.07998 * 127.25792 * 0.03679 * 22 21 19 43 43 H 1.09000 * 109.47173 * 90.00166 * 26 25 23 44 44 H 1.09005 * 109.47227 * 210.00354 * 26 25 23 45 45 H 1.09005 * 109.47401 * 330.00806 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1485 1.2327 -0.4081 5 6 1.5599 2.3278 0.5245 6 7 0.4183 2.2401 1.1734 7 14 2.3868 3.9889 0.3093 8 1 3.5857 3.8371 -0.5536 9 1 1.4363 4.9364 -0.3264 10 1 2.7956 4.5141 1.6368 11 6 2.1975 -1.2687 0.0006 12 6 2.6115 -1.6193 -1.4300 13 1 3.1978 -0.8037 -1.8532 14 6 1.3633 -1.8432 -2.2820 15 6 1.7780 -2.3315 -3.6718 16 6 2.5238 -3.6619 -3.5454 17 6 3.7897 -3.4557 -2.7079 18 7 3.4133 -2.8504 -1.4231 19 6 3.7916 -3.4170 -0.2601 20 8 3.3696 -2.9817 0.7937 21 6 4.7188 -4.5668 -0.2660 22 6 5.1429 -5.3121 0.8597 23 6 5.9777 -6.2614 0.3713 24 17 6.8041 -7.4790 1.2923 25 7 6.0464 -6.0832 -0.9658 26 6 6.8445 -6.9034 -1.8803 27 7 5.3112 -5.0913 -1.3201 28 1 -0.3634 0.1044 1.0223 29 1 -0.3633 0.8332 -0.6016 30 1 -0.3633 -0.9375 -0.4208 31 1 0.0063 3.0380 1.5403 32 1 1.5580 -2.0573 0.3974 33 1 3.0870 -1.1745 0.6235 34 1 0.8120 -0.9074 -2.3746 35 1 0.7306 -2.5928 -1.8067 36 1 2.4303 -1.5923 -4.1367 37 1 0.8896 -2.4703 -4.2878 38 1 2.7983 -4.0208 -4.5374 39 1 1.8806 -4.3947 -3.0581 40 1 4.4742 -2.7928 -3.2374 41 1 4.2743 -4.4159 -2.5314 42 1 4.8579 -5.1595 1.8901 43 1 6.2451 -7.7427 -2.2329 44 1 7.1585 -6.2984 -2.7310 45 1 7.7241 -7.2794 -1.3576 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316805415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:24 Heat of formation + Delta-G solvation = 75.406512 kcal Electronic energy + Delta-G solvation = -28402.255532 eV Core-core repulsion = 24483.898871 eV Total energy + Delta-G solvation = -3918.356660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.90146 -41.36061 -38.46177 -37.99581 -37.28054 -34.85921 -33.78428 -33.71865 -31.94834 -31.40730 -28.89064 -28.10110 -27.55480 -25.85892 -24.42211 -23.55296 -22.75149 -22.21603 -21.48587 -20.27768 -18.79735 -18.45297 -17.65773 -17.56409 -17.10227 -16.62764 -16.29780 -15.66433 -15.46798 -15.40505 -15.17798 -15.10435 -14.72207 -14.56858 -14.27001 -14.09701 -13.94741 -13.76249 -13.51425 -13.21504 -13.10785 -13.03136 -12.83041 -12.75364 -12.55697 -12.38479 -12.12979 -12.06471 -11.92613 -11.77669 -11.70037 -11.52046 -11.08314 -10.64459 -10.46885 -10.27906 -10.11969 -9.48757 -8.67258 -7.78658 -5.31202 0.31496 0.35844 0.76388 1.44025 1.45661 1.46626 1.57504 2.04242 2.25720 2.53365 3.07220 3.33299 3.61655 3.84198 3.94932 3.98547 4.06933 4.12082 4.19042 4.31391 4.34419 4.38732 4.41212 4.55514 4.63552 4.64934 4.73217 4.87835 4.90992 4.98474 5.04862 5.12311 5.14852 5.20163 5.25144 5.28151 5.39190 5.48701 5.51060 5.64945 5.72866 5.80603 6.34325 6.42398 6.63399 7.13165 7.21378 7.91066 8.37225 9.24310 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015338 B = 0.003035 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.075777 B = 9223.424465 C =10166.157103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.616 5.616 3 C -0.259 4.259 4 H 0.064 0.936 5 C -0.054 4.054 6 N -0.940 5.940 7 Si 0.971 3.029 8 H -0.267 1.267 9 H -0.287 1.287 10 H -0.292 1.292 11 C 0.174 3.826 12 C 0.136 3.864 13 H 0.057 0.943 14 C -0.114 4.114 15 C -0.115 4.115 16 C -0.123 4.123 17 C 0.083 3.917 18 N -0.590 5.590 19 C 0.586 3.414 20 O -0.556 6.556 21 C -0.020 4.020 22 C -0.171 4.171 23 C 0.058 3.942 24 Cl 0.026 6.974 25 N -0.265 5.265 26 C 0.065 3.935 27 N -0.235 5.235 28 H -0.001 1.001 29 H 0.017 0.983 30 H 0.026 0.974 31 H 0.248 0.752 32 H 0.037 0.963 33 H 0.041 0.959 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.134 0.866 42 H 0.169 0.831 43 H 0.113 0.887 44 H 0.120 0.880 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.250 -24.943 -11.828 31.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.341 5.341 3 C -0.390 4.390 4 H 0.082 0.918 5 C -0.248 4.248 6 N -0.587 5.587 7 Si 0.799 3.201 8 H -0.191 1.191 9 H -0.214 1.214 10 H -0.219 1.219 11 C 0.048 3.952 12 C 0.031 3.969 13 H 0.075 0.925 14 C -0.152 4.152 15 C -0.153 4.153 16 C -0.161 4.161 17 C -0.039 4.039 18 N -0.322 5.322 19 C 0.373 3.627 20 O -0.433 6.433 21 C -0.177 4.177 22 C -0.200 4.200 23 C -0.094 4.094 24 Cl 0.055 6.945 25 N -0.056 5.056 26 C -0.073 4.073 27 N -0.074 5.074 28 H 0.017 0.983 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.122 0.878 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.150 0.850 42 H 0.186 0.814 43 H 0.131 0.869 44 H 0.138 0.862 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.196 -24.689 -12.364 31.047 hybrid contribution 0.004 1.147 1.406 1.814 sum 14.200 -23.543 -10.958 29.597 Atomic orbital electron populations 1.20526 0.82981 0.95475 0.97335 1.44331 1.02023 1.01676 1.86073 1.19468 0.99716 0.87387 1.32387 0.91844 1.25901 0.98541 1.02183 0.98217 1.70243 1.20104 1.28010 1.40390 0.85151 0.78015 0.79773 0.77187 1.19099 1.21374 1.21900 1.21237 0.95369 0.85954 0.92609 1.21824 0.91899 0.84138 0.99040 0.92495 1.21713 0.96230 1.00952 0.96316 1.21534 1.00958 0.97509 0.95258 1.21878 0.96107 0.97057 1.01060 1.22681 0.97622 1.01369 0.82247 1.48159 1.51949 1.25600 1.06537 1.17419 0.80010 0.81457 0.83837 1.90897 1.56785 1.62571 1.33046 1.21638 1.03934 1.00753 0.91398 1.21555 1.01168 0.96304 1.00944 1.21854 1.03847 0.98547 0.85120 1.98416 1.76166 1.50718 1.69246 1.46155 1.32313 1.21918 1.05187 1.22818 0.95539 0.95198 0.93716 1.73435 1.07874 1.01688 1.24359 0.98281 0.96414 0.95542 0.94306 0.94452 0.94108 0.92038 0.93058 0.91713 0.90374 0.87765 0.92315 0.91125 0.84955 0.81384 0.86893 0.86203 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.85 7.99 127.77 1.02 10.87 16 2 N -0.62 -34.30 2.61 -726.96 -1.90 -36.20 16 3 C -0.26 -15.40 9.63 84.03 0.81 -14.59 16 4 H 0.06 3.70 7.84 -2.91 -0.02 3.68 16 5 C -0.05 -3.21 5.19 84.86 0.44 -2.77 16 6 N -0.94 -59.11 10.65 21.65 0.23 -58.88 16 7 Si 0.97 47.55 29.56 68.60 2.03 49.57 16 8 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 9 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 10 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 11 C 0.17 8.60 3.51 86.38 0.30 8.90 16 12 C 0.14 5.38 3.11 44.83 0.14 5.52 16 13 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 14 C -0.11 -3.90 4.31 30.53 0.13 -3.76 16 15 C -0.12 -2.83 5.89 30.62 0.18 -2.65 16 16 C -0.12 -2.51 6.08 30.67 0.19 -2.32 16 17 C 0.08 1.98 6.14 86.36 0.53 2.51 16 18 N -0.59 -19.74 2.98 -799.35 -2.38 -22.12 16 19 C 0.59 21.39 7.60 86.75 0.66 22.05 16 20 O -0.56 -24.97 12.35 -3.94 -0.05 -25.01 16 21 C -0.02 -0.57 6.86 42.46 0.29 -0.28 16 22 C -0.17 -4.34 10.80 22.45 0.24 -4.10 16 23 C 0.06 1.08 7.44 83.57 0.62 1.70 16 24 Cl 0.03 0.35 28.67 -2.72 -0.08 0.27 16 25 N -0.27 -4.29 3.70 -359.15 -1.33 -5.62 16 26 C 0.06 0.32 11.14 127.77 1.42 1.75 16 27 N -0.24 -5.19 8.40 -48.17 -0.40 -5.59 16 28 H 0.00 -0.07 7.25 -2.39 -0.02 -0.08 16 29 H 0.02 0.98 7.46 -2.39 -0.02 0.97 16 30 H 0.03 1.24 7.18 -2.39 -0.02 1.22 16 31 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 32 H 0.04 1.90 7.08 -2.38 -0.02 1.88 16 33 H 0.04 2.25 6.18 -2.39 -0.01 2.24 16 34 H 0.06 2.39 7.05 -2.39 -0.02 2.37 16 35 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 41 H 0.13 2.87 4.10 -38.01 -0.16 2.71 16 42 H 0.17 4.30 8.06 -2.91 -0.02 4.27 16 43 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.12 0.29 8.14 -2.38 -0.02 0.27 16 45 H 0.12 0.19 7.71 -2.38 -0.02 0.17 16 Total: -1.00 -77.43 367.42 3.95 -73.47 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 0.85 Total: 7.31 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: 6.98 Total: 22.80 kcal Atomic # 7 Polarization: -122.64 SS G_CDS: -5.78 Total: -128.42 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.05 Total: -25.01 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.57 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -0.08 Total: 0.27 kcal Total: -77.43 3.95 -73.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316805415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.881 kcal (2) G-P(sol) polarization free energy of solvation -77.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds