Wall clock time and date at job start Sat Apr 11 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35352 * 117.00497 * 2 1 4 4 N 1.30547 * 125.44705 * 179.97438 * 3 2 1 5 5 C 1.36335 * 108.38152 * 180.02562 * 4 3 2 6 6 C 1.47372 * 126.40981 * 179.97438 * 5 4 3 7 7 O 1.21620 * 119.99335 * 180.02562 * 6 5 4 8 8 N 1.34775 * 120.00353 * 0.02768 * 6 5 4 9 9 C 1.46500 * 120.00004 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.46894 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47220 * 179.97438 * 10 9 8 12 12 N 1.46896 * 109.47596 * 180.02562 * 11 10 9 13 13 C 1.46905 * 110.99916 * 66.04629 * 12 11 10 14 14 C 1.46894 * 111.00353 * 190.00023 * 12 11 10 15 15 C 1.50703 * 109.47325 * 170.00091 * 14 12 11 16 16 O 1.21287 * 120.00140 * 359.97438 * 15 14 12 17 17 N 1.34775 * 120.00163 * 180.02562 * 15 14 12 18 18 C 1.37096 * 120.00240 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99803 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00240 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00142 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00050 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47139 * 89.99659 * 22 20 18 24 24 H 1.48501 * 109.47197 * 209.99876 * 22 20 18 25 25 H 1.48502 * 109.46959 * 329.99832 * 22 20 18 26 26 C 1.35914 * 107.17453 * 0.02562 * 5 4 3 27 27 O 1.34201 * 125.44521 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.47187 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46789 * 299.99798 * 1 2 3 30 30 H 1.08999 * 109.47047 * 59.99727 * 1 2 3 31 31 H 0.97005 * 119.99860 * 359.97438 * 8 6 5 32 32 H 1.08996 * 109.46837 * 299.99752 * 9 8 6 33 33 H 1.09002 * 109.46736 * 59.99982 * 9 8 6 34 34 H 1.09002 * 109.47555 * 300.00059 * 10 9 8 35 35 H 1.09008 * 109.47463 * 60.00123 * 10 9 8 36 36 H 1.09002 * 109.47358 * 300.00167 * 11 10 9 37 37 H 1.09007 * 109.47243 * 60.00012 * 11 10 9 38 38 H 1.08993 * 109.47053 * 60.00572 * 13 12 11 39 39 H 1.09001 * 109.47060 * 180.02562 * 13 12 11 40 40 H 1.08998 * 109.46780 * 300.00300 * 13 12 11 41 41 H 1.08997 * 109.47394 * 289.99923 * 14 12 11 42 42 H 1.09004 * 109.47411 * 50.00261 * 14 12 11 43 43 H 0.97010 * 120.00187 * 359.97438 * 17 15 14 44 44 H 0.96997 * 120.00009 * 180.02562 * 21 20 18 45 45 H 1.07995 * 126.45660 * 180.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2059 0.0000 4 7 3.3349 1.3976 0.0005 5 6 3.5702 2.7405 0.0009 6 6 4.8894 3.3974 0.0020 7 8 4.9642 4.6113 0.0027 8 7 6.0130 2.6530 0.0022 9 6 7.3243 3.3061 0.0027 10 6 8.4238 2.2422 0.0035 11 6 9.7934 2.9241 0.0034 12 7 10.8491 1.9027 0.0035 13 6 10.8403 1.1364 -1.2498 14 6 12.1666 2.5073 0.2416 15 6 13.1828 1.4200 0.4790 16 8 12.8428 0.2560 0.4530 17 7 14.4691 1.7410 0.7213 18 6 15.3934 0.7520 0.9378 19 1 15.0907 -0.2845 0.9146 20 6 16.7197 1.0829 1.1871 21 7 17.6058 0.1348 1.3941 22 14 17.2432 2.8756 1.2280 23 1 17.1119 3.3982 2.6117 24 1 18.6571 2.9886 0.7882 25 1 16.3767 3.6652 0.3164 26 6 2.3605 3.3599 0.0012 27 8 1.4229 2.3958 0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 5.9533 1.6848 0.0020 32 1 7.4208 3.9281 -0.8871 33 1 7.4202 3.9278 0.8929 34 1 8.3273 1.6204 0.8935 35 1 8.3282 1.6200 -0.8865 36 1 9.8898 3.5457 -0.8868 37 1 9.8895 3.5465 0.8932 38 1 11.0070 1.8111 -2.0894 39 1 11.6313 0.3869 -1.2229 40 1 9.8758 0.6422 -1.3666 41 1 12.4595 3.0945 -0.6287 42 1 12.1164 3.1550 1.1169 43 1 14.7410 2.6720 0.7425 44 1 18.5315 0.3659 1.5685 45 1 2.1851 4.4255 0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316841847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:28 Heat of formation + Delta-G solvation = -62.045960 kcal Electronic energy + Delta-G solvation = -27824.985553 eV Core-core repulsion = 23459.959341 eV Total energy + Delta-G solvation = -4365.026211 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.97845 -39.93482 -39.31004 -38.79795 -37.03524 -35.48450 -35.26806 -33.88328 -31.77215 -31.59477 -30.58005 -28.07321 -28.02664 -26.78801 -25.07218 -24.12100 -23.02637 -22.37458 -21.27432 -20.71211 -19.43283 -19.28997 -18.21419 -18.06111 -17.67984 -16.94409 -16.48913 -16.15637 -15.89919 -15.81989 -15.70067 -15.23045 -14.99531 -14.82353 -14.34887 -14.18886 -13.97701 -13.63499 -13.44729 -13.06588 -12.92035 -12.57578 -12.42495 -12.36299 -12.15729 -11.76859 -11.73507 -11.55608 -11.36533 -11.30388 -11.28693 -10.99139 -10.75197 -10.58692 -10.56928 -9.95183 -9.51244 -9.44800 -9.16892 -8.54502 -8.15257 -7.92943 -6.28593 -3.79828 0.60124 1.37342 1.53960 2.18290 2.75006 2.90073 3.04604 3.09063 3.17056 3.77101 3.89983 4.01915 4.12716 4.22839 4.36165 4.38004 4.58890 4.76564 4.78506 4.82932 4.93226 4.97208 5.05150 5.22740 5.24689 5.36474 5.48619 5.53997 5.60522 5.68163 5.86993 5.89474 5.97265 5.98515 6.04887 6.06678 6.15475 6.54423 6.90366 7.18748 7.22443 7.33956 7.61486 7.79315 8.17571 8.63261 8.98190 9.45428 9.86893 10.84603 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027356 B = 0.001473 C = 0.001416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.305263 B =19007.182297 C =19773.251875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.243 6.243 3 C 0.383 3.617 4 N -0.456 5.456 5 C -0.048 4.048 6 C 0.604 3.396 7 O -0.535 6.535 8 N -0.708 5.708 9 C 0.120 3.880 10 C -0.129 4.129 11 C 0.059 3.941 12 N -0.519 5.519 13 C 0.019 3.981 14 C 0.043 3.957 15 C 0.453 3.547 16 O -0.559 6.559 17 N -0.592 5.592 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.882 5.882 22 Si 0.879 3.121 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.005 3.995 27 O -0.225 6.225 28 H 0.121 0.879 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.413 0.587 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.076 0.924 38 H 0.014 0.986 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.090 0.910 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.793 8.152 -4.332 35.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.151 6.151 3 C 0.137 3.863 4 N -0.201 5.201 5 C -0.167 4.167 6 C 0.388 3.612 7 O -0.413 6.413 8 N -0.359 5.359 9 C -0.004 4.004 10 C -0.167 4.167 11 C -0.070 4.070 12 N -0.243 5.243 13 C -0.129 4.129 14 C -0.088 4.088 15 C 0.239 3.761 16 O -0.440 6.440 17 N -0.232 5.232 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.522 5.522 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.067 4.067 27 O -0.116 6.116 28 H 0.139 0.861 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.248 0.752 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.095 0.905 38 H 0.033 0.967 39 H 0.114 0.886 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.108 0.892 43 H 0.203 0.797 44 H 0.083 0.917 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -34.369 7.084 -3.918 35.310 hybrid contribution -0.033 2.021 -0.582 2.103 sum -34.402 9.105 -4.501 35.870 Atomic orbital electron populations 1.23338 0.74886 1.05882 1.03060 1.86410 1.23823 1.15711 1.89121 1.23379 0.85590 0.79586 0.97732 1.71112 1.09836 1.15562 1.23630 1.21672 0.95853 0.88447 1.10742 1.16612 0.81961 0.85896 0.76691 1.90850 1.86759 1.12685 1.50984 1.45820 1.05384 1.11198 1.73455 1.21423 0.80522 0.95672 1.02763 1.21788 0.92846 0.97976 1.04122 1.22000 0.90685 0.93326 1.00996 1.61526 1.02451 1.24151 1.36153 1.22599 1.03817 0.98559 0.87926 1.21897 0.89530 0.96151 1.01266 1.19654 0.82675 0.89893 0.83892 1.90524 1.79030 1.19921 1.54569 1.42218 1.07818 1.08188 1.64943 1.19428 0.87626 0.90781 1.45436 0.86279 1.25028 0.95604 0.97906 0.97601 1.69622 1.03080 1.31992 1.47552 0.86676 0.79136 0.84737 0.78857 1.19610 1.20231 1.19542 1.24988 0.84887 0.93852 1.03015 1.84402 1.39535 1.15889 1.71793 0.86112 0.91299 0.91323 0.75151 0.91124 0.90861 0.89906 0.90877 0.94810 0.90527 0.96705 0.88594 0.91845 0.93349 0.89226 0.79732 0.91655 0.74681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 10.73 101.05 1.08 1.14 16 2 O -0.24 -1.70 10.55 -40.98 -0.43 -2.13 16 3 C 0.38 3.28 8.98 52.22 0.47 3.75 16 4 N -0.46 -4.70 11.10 -11.71 -0.13 -4.83 16 5 C -0.05 -0.47 6.99 -82.98 -0.58 -1.05 16 6 C 0.60 6.60 7.81 -12.54 -0.10 6.50 16 7 O -0.54 -7.04 16.89 5.26 0.09 -6.95 16 8 N -0.71 -6.89 5.55 -61.40 -0.34 -7.23 16 9 C 0.12 1.12 5.67 -4.04 -0.02 1.10 16 10 C -0.13 -1.29 5.25 -26.74 -0.14 -1.43 16 11 C 0.06 0.68 4.96 -3.83 -0.02 0.66 16 12 N -0.52 -8.19 4.50 -244.37 -1.10 -9.29 16 13 C 0.02 0.29 8.96 60.07 0.54 0.83 16 14 C 0.04 0.72 5.45 -4.98 -0.03 0.70 16 15 C 0.45 10.31 7.47 -10.98 -0.08 10.23 16 16 O -0.56 -14.89 13.91 5.55 0.08 -14.81 16 17 N -0.59 -14.15 5.09 -10.96 -0.06 -14.21 16 18 C -0.30 -8.62 10.16 -14.94 -0.15 -8.77 16 19 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 20 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 21 N -0.88 -25.87 13.96 55.50 0.77 -25.10 16 22 Si 0.88 19.45 27.74 -169.99 -4.71 14.73 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 26 C 0.01 0.04 11.93 29.90 0.36 0.39 16 27 O -0.23 -1.58 10.20 -17.74 -0.18 -1.76 16 28 H 0.12 0.00 8.14 -51.93 -0.42 -0.42 16 29 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.41 3.70 8.20 -40.82 -0.33 3.36 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.72 6.55 -51.92 -0.34 0.38 16 36 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 37 H 0.08 0.82 7.93 -51.92 -0.41 0.41 16 38 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 39 H 0.10 1.86 5.83 -51.93 -0.30 1.55 16 40 H 0.06 0.86 6.47 -51.93 -0.34 0.52 16 41 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 42 H 0.09 1.31 7.93 -51.93 -0.41 0.90 16 43 H 0.37 7.77 5.76 -40.82 -0.24 7.53 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.24 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 385.75 15.07 5.81 5.81 Total: -1.00 -36.23 385.75 -5.12 -41.35 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -6.15 Total: 9.32 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 1.23 Total: 15.09 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: -0.85 Total: -60.65 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.45 Total: -25.66 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.71 Total: 14.73 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.23 -5.12 -41.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316841847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.693 kcal (2) G-P(sol) polarization free energy of solvation -36.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds