Wall clock time and date at job start Sat Apr 11 2020 06:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35352 * 117.00497 * 2 1 4 4 N 1.30547 * 125.44705 * 179.97438 * 3 2 1 5 5 C 1.36335 * 108.38152 * 180.02562 * 4 3 2 6 6 C 1.47372 * 126.40981 * 179.97438 * 5 4 3 7 7 O 1.21620 * 119.99335 * 180.02562 * 6 5 4 8 8 N 1.34775 * 120.00353 * 0.02768 * 6 5 4 9 9 C 1.46500 * 120.00004 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.46894 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47220 * 179.97438 * 10 9 8 12 12 N 1.46896 * 109.47596 * 180.02562 * 11 10 9 13 13 C 1.46905 * 110.99916 * 66.04629 * 12 11 10 14 14 C 1.46894 * 111.00353 * 190.00023 * 12 11 10 15 15 C 1.50703 * 109.47325 * 170.00091 * 14 12 11 16 16 O 1.21287 * 120.00140 * 359.97438 * 15 14 12 17 17 N 1.34775 * 120.00163 * 180.02562 * 15 14 12 18 18 C 1.37096 * 120.00240 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99803 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00240 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00142 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00050 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47139 * 89.99659 * 22 20 18 24 24 H 1.48501 * 109.47197 * 209.99876 * 22 20 18 25 25 H 1.48502 * 109.46959 * 329.99832 * 22 20 18 26 26 C 1.35914 * 107.17453 * 0.02562 * 5 4 3 27 27 O 1.34201 * 125.44521 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.47187 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46789 * 299.99798 * 1 2 3 30 30 H 1.08999 * 109.47047 * 59.99727 * 1 2 3 31 31 H 0.97005 * 119.99860 * 359.97438 * 8 6 5 32 32 H 1.08996 * 109.46837 * 299.99752 * 9 8 6 33 33 H 1.09002 * 109.46736 * 59.99982 * 9 8 6 34 34 H 1.09002 * 109.47555 * 300.00059 * 10 9 8 35 35 H 1.09008 * 109.47463 * 60.00123 * 10 9 8 36 36 H 1.09002 * 109.47358 * 300.00167 * 11 10 9 37 37 H 1.09007 * 109.47243 * 60.00012 * 11 10 9 38 38 H 1.08993 * 109.47053 * 60.00572 * 13 12 11 39 39 H 1.09001 * 109.47060 * 180.02562 * 13 12 11 40 40 H 1.08998 * 109.46780 * 300.00300 * 13 12 11 41 41 H 1.08997 * 109.47394 * 289.99923 * 14 12 11 42 42 H 1.09004 * 109.47411 * 50.00261 * 14 12 11 43 43 H 0.97010 * 120.00187 * 359.97438 * 17 15 14 44 44 H 0.96997 * 120.00009 * 180.02562 * 21 20 18 45 45 H 1.07995 * 126.45660 * 180.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2059 0.0000 4 7 3.3349 1.3976 0.0005 5 6 3.5702 2.7405 0.0009 6 6 4.8894 3.3974 0.0020 7 8 4.9642 4.6113 0.0027 8 7 6.0130 2.6530 0.0022 9 6 7.3243 3.3061 0.0027 10 6 8.4238 2.2422 0.0035 11 6 9.7934 2.9241 0.0034 12 7 10.8491 1.9027 0.0035 13 6 10.8403 1.1364 -1.2498 14 6 12.1666 2.5073 0.2416 15 6 13.1828 1.4200 0.4790 16 8 12.8428 0.2560 0.4530 17 7 14.4691 1.7410 0.7213 18 6 15.3934 0.7520 0.9378 19 1 15.0907 -0.2845 0.9146 20 6 16.7197 1.0829 1.1871 21 7 17.6058 0.1348 1.3941 22 14 17.2432 2.8756 1.2280 23 1 17.1119 3.3982 2.6117 24 1 18.6571 2.9886 0.7882 25 1 16.3767 3.6652 0.3164 26 6 2.3605 3.3599 0.0012 27 8 1.4229 2.3958 0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 5.9533 1.6848 0.0020 32 1 7.4208 3.9281 -0.8871 33 1 7.4202 3.9278 0.8929 34 1 8.3273 1.6204 0.8935 35 1 8.3282 1.6200 -0.8865 36 1 9.8898 3.5457 -0.8868 37 1 9.8895 3.5465 0.8932 38 1 11.0070 1.8111 -2.0894 39 1 11.6313 0.3869 -1.2229 40 1 9.8758 0.6422 -1.3666 41 1 12.4595 3.0945 -0.6287 42 1 12.1164 3.1550 1.1169 43 1 14.7410 2.6720 0.7425 44 1 18.5315 0.3659 1.5685 45 1 2.1851 4.4255 0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316841847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:27 Heat of formation + Delta-G solvation = -96.291830 kcal Electronic energy + Delta-G solvation = -27826.470565 eV Core-core repulsion = 23459.959341 eV Total energy + Delta-G solvation = -4366.511224 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.56701 -40.73084 -40.45648 -39.77721 -38.30269 -36.33220 -36.07806 -35.79347 -33.73431 -32.64255 -31.17809 -29.48793 -28.32203 -27.77382 -26.61593 -25.21115 -23.81644 -23.19450 -22.11278 -21.53701 -21.22195 -20.17333 -19.99393 -18.60867 -18.36314 -17.82999 -17.44363 -17.05402 -16.95968 -16.79225 -16.46608 -16.35465 -16.15923 -15.94439 -15.56699 -15.37753 -14.89736 -14.81736 -14.76954 -14.45763 -14.25832 -13.69136 -13.38395 -13.10908 -13.07098 -12.97032 -12.81962 -12.70832 -12.49094 -12.39738 -12.30796 -12.11044 -11.95982 -11.94877 -11.63139 -11.45175 -11.42704 -10.34075 -10.21970 -10.20606 -9.76512 -9.16722 -8.39225 -5.99769 -0.00160 0.86133 0.87482 1.31688 1.37358 1.45878 1.68549 1.99260 2.04962 2.15183 2.24837 2.68110 3.16865 3.28147 3.35125 3.73105 3.97771 4.02374 4.10613 4.14641 4.20481 4.24423 4.25308 4.41178 4.42103 4.46502 4.56242 4.62233 4.63269 4.65172 4.68505 4.76617 4.83018 5.10920 5.21092 5.27402 5.38266 5.55527 5.57845 5.92893 6.04832 6.22975 6.26579 6.53102 6.62707 6.91380 7.01661 7.42964 8.00933 8.78547 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027356 B = 0.001473 C = 0.001416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.305263 B =19007.182297 C =19773.251875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.258 6.258 3 C 0.381 3.619 4 N -0.485 5.485 5 C -0.079 4.079 6 C 0.604 3.396 7 O -0.563 6.563 8 N -0.706 5.706 9 C 0.127 3.873 10 C -0.119 4.119 11 C 0.061 3.939 12 N -0.543 5.543 13 C 0.024 3.976 14 C 0.054 3.946 15 C 0.451 3.549 16 O -0.606 6.606 17 N -0.593 5.593 18 C -0.327 4.327 19 H 0.054 0.946 20 C -0.015 4.015 21 N -0.936 5.936 22 Si 0.965 3.035 23 H -0.257 1.257 24 H -0.276 1.276 25 H -0.231 1.231 26 C 0.030 3.970 27 O -0.216 6.216 28 H 0.144 0.856 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.415 0.585 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.091 0.909 38 H 0.033 0.967 39 H 0.050 0.950 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.121 0.879 43 H 0.389 0.611 44 H 0.278 0.722 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.768 11.812 -4.703 38.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.166 6.166 3 C 0.135 3.865 4 N -0.232 5.232 5 C -0.197 4.197 6 C 0.390 3.610 7 O -0.443 6.443 8 N -0.356 5.356 9 C 0.003 3.997 10 C -0.157 4.157 11 C -0.067 4.067 12 N -0.267 5.267 13 C -0.124 4.124 14 C -0.077 4.077 15 C 0.238 3.762 16 O -0.490 6.490 17 N -0.235 5.235 18 C -0.456 4.456 19 H 0.073 0.927 20 C -0.213 4.213 21 N -0.577 5.577 22 Si 0.785 3.215 23 H -0.182 1.182 24 H -0.201 1.201 25 H -0.154 1.154 26 C -0.043 4.043 27 O -0.107 6.107 28 H 0.162 0.838 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.252 0.748 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.139 0.861 43 H 0.225 0.775 44 H 0.088 0.912 45 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -36.385 10.738 -4.298 38.179 hybrid contribution 0.418 0.703 -0.473 0.945 sum -35.967 11.441 -4.772 38.043 Atomic orbital electron populations 1.23705 0.72564 1.07752 1.03957 1.86422 1.26190 1.15069 1.88912 1.23456 0.85513 0.80312 0.97243 1.71011 1.11107 1.16175 1.24873 1.21593 0.96103 0.88635 1.13406 1.16763 0.82561 0.85621 0.76091 1.90824 1.87234 1.13625 1.52571 1.45835 1.05444 1.11357 1.72930 1.21347 0.80083 0.95298 1.02941 1.21656 0.92464 0.97874 1.03677 1.22076 0.89529 0.92569 1.02540 1.61457 1.02925 1.25967 1.36394 1.22455 1.03014 0.98102 0.88834 1.21838 0.88131 0.93855 1.03864 1.20951 0.83122 0.90881 0.81210 1.90515 1.79925 1.22780 1.55755 1.42046 1.07683 1.08096 1.65705 1.19001 0.89515 0.89443 1.47687 0.92738 1.26101 0.94721 1.04485 0.96037 1.69807 1.03796 1.35530 1.48550 0.85365 0.78970 0.76919 0.80259 1.18161 1.20113 1.15448 1.25613 0.83994 0.94815 0.99875 1.84437 1.39210 1.15564 1.71468 0.83814 0.90425 0.90386 0.74844 0.90775 0.90801 0.90899 0.90843 0.93002 0.89091 0.94854 0.93129 0.90252 0.90424 0.86063 0.77525 0.91213 0.71626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 10.73 113.37 1.22 1.26 16 2 O -0.26 -3.39 10.55 -64.21 -0.68 -4.07 16 3 C 0.38 6.22 8.98 130.43 1.17 7.39 16 4 N -0.49 -9.84 11.10 -419.39 -4.65 -14.50 16 5 C -0.08 -1.47 6.99 40.31 0.28 -1.19 16 6 C 0.60 12.71 7.81 86.65 0.68 13.39 16 7 O -0.56 -14.20 16.89 -4.09 -0.07 -14.27 16 8 N -0.71 -13.11 5.55 -466.43 -2.59 -15.70 16 9 C 0.13 2.14 5.67 86.38 0.49 2.63 16 10 C -0.12 -2.13 5.25 30.59 0.16 -1.97 16 11 C 0.06 1.20 4.96 86.30 0.43 1.63 16 12 N -0.54 -16.03 4.50 -927.06 -4.17 -20.20 16 13 C 0.02 0.72 8.96 127.69 1.14 1.87 16 14 C 0.05 1.66 5.45 85.56 0.47 2.13 16 15 C 0.45 20.50 7.47 87.66 0.66 21.16 16 16 O -0.61 -33.73 13.91 -3.05 -0.04 -33.77 16 17 N -0.59 -28.18 5.09 -306.99 -1.56 -29.74 16 18 C -0.33 -19.34 10.16 84.04 0.85 -18.49 16 19 H 0.05 3.84 7.39 -2.91 -0.02 3.82 16 20 C -0.02 -0.84 5.50 84.93 0.47 -0.38 16 21 N -0.94 -56.92 13.96 21.66 0.30 -56.62 16 22 Si 0.96 39.02 27.74 68.60 1.90 40.93 16 23 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 24 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 26 C 0.03 0.36 11.93 67.28 0.80 1.17 16 27 O -0.22 -2.68 10.20 18.93 0.19 -2.49 16 28 H 0.14 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.08 0.10 8.14 -2.38 -0.02 0.08 16 30 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.42 7.28 8.20 -92.70 -0.76 6.52 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.07 1.32 6.55 -2.38 -0.02 1.31 16 36 H 0.05 0.89 8.12 -2.39 -0.02 0.87 16 37 H 0.09 1.58 7.93 -2.38 -0.02 1.56 16 38 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.05 2.01 5.83 -2.39 -0.01 1.99 16 40 H 0.08 2.08 6.47 -2.39 -0.02 2.06 16 41 H 0.08 1.99 8.12 -2.39 -0.02 1.97 16 42 H 0.12 3.01 7.93 -2.38 -0.02 2.99 16 43 H 0.39 15.25 5.76 -92.70 -0.53 14.72 16 44 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 45 H 0.27 1.29 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -85.31 385.75 -2.86 -88.17 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: -0.30 Total: 31.65 kcal Atomic # 6 Polarization: 21.79 SS G_CDS: 8.81 Total: 30.60 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -12.68 Total: -136.76 kcal Atomic # 8 Polarization: -53.99 SS G_CDS: -0.60 Total: -54.59 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 1.90 Total: 40.93 kcal Total: -85.31 -2.86 -88.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316841847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.124 kcal (2) G-P(sol) polarization free energy of solvation -85.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds