Wall clock time and date at job start Sat Apr 11 2020 06:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99685 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99866 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99859 * 3 2 1 7 7 C 1.38797 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00246 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00077 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46640 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00233 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99340 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99719 * 179.97438 * 13 11 10 15 15 H 1.09005 * 112.84908 * 23.80587 * 14 13 11 16 16 C 1.53775 * 113.61291 * 155.00004 * 14 13 11 17 17 C 1.53779 * 87.08100 * 89.11750 * 16 14 13 18 18 H 1.09002 * 113.61225 * 270.87943 * 17 16 14 19 19 N 1.46900 * 113.61295 * 139.98201 * 17 16 14 20 20 C 1.46898 * 111.00272 * 154.99882 * 19 17 16 21 21 C 1.52996 * 109.47640 * 179.97438 * 20 19 17 22 22 H 1.09004 * 115.56169 * 29.38393 * 21 20 19 23 23 C 1.53176 * 117.52385 * 243.60957 * 21 20 19 24 24 C 1.52123 * 117.52460 * 175.23513 * 21 20 19 25 25 C 1.54041 * 121.47283 * 356.56604 * 24 21 20 26 26 C 1.55183 * 101.82978 * 195.70198 * 25 24 21 27 27 O 1.44450 * 103.63338 * 36.33341 * 26 25 24 28 28 C 1.43997 * 107.04644 * 320.42794 * 27 26 25 29 29 C 1.53776 * 87.08130 * 25.43349 * 17 16 14 30 30 H 0.96998 * 119.99330 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46901 * 299.99874 * 10 9 7 32 32 H 1.08995 * 109.46756 * 60.00354 * 10 9 7 33 33 H 0.96995 * 120.00137 * 359.97438 * 13 11 10 34 34 H 1.08999 * 113.61470 * 203.66663 * 16 14 13 35 35 H 1.09004 * 113.61450 * 334.48026 * 16 14 13 36 36 H 1.00902 * 110.99899 * 278.95179 * 19 17 16 37 37 H 1.08998 * 109.47199 * 300.00419 * 20 19 17 38 38 H 1.09004 * 109.47019 * 59.99805 * 20 19 17 39 39 H 1.09002 * 117.51834 * 359.97438 * 23 21 20 40 40 H 1.09001 * 117.52019 * 145.09647 * 23 21 20 41 41 H 1.08994 * 110.96085 * 313.84295 * 25 24 21 42 42 H 1.09002 * 110.95361 * 77.56982 * 25 24 21 43 43 H 1.08995 * 110.59465 * 277.78935 * 26 25 24 44 44 H 1.09008 * 110.59019 * 154.86482 * 26 25 24 45 45 H 1.08995 * 109.97088 * 266.94097 * 28 27 26 46 46 H 1.08995 * 110.00397 * 145.68795 * 28 27 26 47 47 H 1.09003 * 113.60995 * 220.02125 * 29 17 16 48 48 H 1.09000 * 113.61885 * 89.11757 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 1.4001 5 1 1.4478 2.6527 -0.7001 6 1 3.5479 1.4402 -0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3305 -7.7151 -0.0008 15 1 1.3216 -7.7893 -0.4066 16 6 3.3107 -8.7398 -0.5958 17 6 3.8837 -8.8978 0.8225 18 1 4.6906 -8.2003 1.0475 19 7 4.2133 -10.2858 1.1727 20 6 5.2507 -10.3345 2.2116 21 6 5.5661 -11.7930 2.5495 22 1 5.4250 -12.5053 1.7366 23 6 5.2596 -12.2723 3.9717 24 6 6.6994 -12.0584 3.5291 25 6 7.5537 -10.9110 4.1005 26 6 8.7732 -11.6788 4.6764 27 8 8.9769 -12.7522 3.7314 28 6 7.6737 -13.2280 3.3457 29 6 2.5109 -8.4405 1.3431 30 1 -0.4849 -0.8401 0.0004 31 1 3.1246 -3.7313 -0.8905 32 1 3.1245 -3.7313 0.8895 33 1 3.8010 -6.1834 -0.0004 34 1 2.8255 -9.6398 -0.9735 35 1 4.0149 -8.3084 -1.3073 36 1 3.3891 -10.7915 1.4608 37 1 6.1526 -9.8422 1.8478 38 1 4.8936 -9.8238 3.1059 39 1 4.8337 -11.5483 4.6664 40 1 4.9169 -13.2997 4.0940 41 1 7.8621 -10.2245 3.3121 42 1 7.0185 -10.3818 4.8889 43 1 8.5439 -12.0766 5.6649 44 1 9.6496 -11.0318 4.7163 45 1 7.3783 -14.0619 3.9825 46 1 7.6854 -13.5427 2.3023 47 1 2.5704 -7.7671 2.1982 48 1 1.8070 -9.2587 1.4956 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317071221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:30 Heat of formation + Delta-G solvation = -67.918455 kcal Electronic energy + Delta-G solvation = -25962.972125 eV Core-core repulsion = 22143.984478 eV Total energy + Delta-G solvation = -3818.987647 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.36233 -40.91205 -39.55507 -37.71597 -35.36399 -34.75524 -33.57884 -31.24549 -30.72712 -28.59595 -27.13116 -26.67922 -26.66335 -24.20471 -23.55314 -22.32291 -21.97788 -20.68325 -20.43954 -19.93168 -18.18168 -17.40602 -17.31801 -17.10608 -16.71865 -16.59547 -16.40476 -16.17337 -15.85443 -15.69430 -15.22601 -15.00437 -14.76992 -14.49377 -14.36238 -14.15528 -13.96486 -13.83578 -13.59797 -13.48492 -13.39449 -13.18414 -12.75283 -12.67390 -12.48758 -12.22223 -11.94631 -11.90049 -11.73223 -11.57695 -11.39237 -11.11292 -11.08886 -10.97457 -10.84542 -10.49237 -10.33613 -10.15378 -9.33329 -8.93401 -8.88088 -6.28716 1.17935 1.47241 1.51506 1.60987 1.79281 2.14152 2.33837 2.61396 2.95947 3.01634 3.04538 3.12424 3.40181 3.52234 3.64216 3.74778 3.79052 3.85863 3.92020 3.97861 4.05111 4.15806 4.23195 4.30152 4.35661 4.44431 4.49795 4.58439 4.70356 4.73152 4.73454 4.76928 4.79846 4.83595 4.84334 4.88675 4.94740 5.01998 5.04493 5.07248 5.10351 5.27298 5.51713 5.63751 5.85647 6.08006 6.14139 6.40001 6.45726 7.05328 7.14059 8.50090 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017560 B = 0.001626 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.175424 B =17211.122363 C =18349.193271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.019 4.019 3 Si 1.139 2.861 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.614 4.614 8 H 0.075 0.925 9 S -0.196 6.196 10 C -0.110 4.110 11 C 0.536 3.464 12 O -0.565 6.565 13 N -0.693 5.693 14 C 0.108 3.892 15 H 0.080 0.920 16 C -0.118 4.118 17 C 0.080 3.920 18 H 0.100 0.900 19 N -0.675 5.675 20 C 0.093 3.907 21 C -0.126 4.126 22 H 0.115 0.885 23 C -0.153 4.153 24 C -0.165 4.165 25 C -0.119 4.119 26 C 0.044 3.956 27 O -0.404 6.404 28 C 0.081 3.919 29 C -0.173 4.173 30 H 0.261 0.739 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.416 0.584 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.350 0.650 37 H 0.071 0.929 38 H 0.033 0.967 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.101 0.899 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.057 0.943 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.029 -28.382 7.608 34.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.222 4.222 3 Si 0.957 3.043 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.761 4.761 8 H 0.094 0.906 9 S 0.031 5.969 10 C -0.262 4.262 11 C 0.321 3.679 12 O -0.443 6.443 13 N -0.346 5.346 14 C 0.002 3.998 15 H 0.098 0.902 16 C -0.157 4.157 17 C -0.031 4.031 18 H 0.118 0.882 19 N -0.305 5.305 20 C -0.035 4.035 21 C -0.145 4.145 22 H 0.133 0.867 23 C -0.190 4.190 24 C -0.166 4.166 25 C -0.156 4.156 26 C -0.032 4.032 27 O -0.324 6.324 28 C 0.004 3.996 29 C -0.214 4.214 30 H 0.071 0.929 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.253 0.747 34 H 0.126 0.874 35 H 0.100 0.900 36 H 0.170 0.830 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.087 0.913 44 H 0.120 0.880 45 H 0.087 0.913 46 H 0.106 0.894 47 H 0.076 0.924 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 16.526 -27.307 7.019 32.681 hybrid contribution 0.815 -0.878 0.867 1.479 sum 17.341 -28.185 7.885 34.019 Atomic orbital electron populations 1.70893 1.08014 1.30020 1.45909 1.27836 0.96323 1.06396 0.91690 0.82683 0.74020 0.69446 0.78173 1.19284 1.20457 1.18661 1.24063 0.96528 0.92774 1.62778 0.90631 1.85071 1.13178 1.01173 1.97484 1.23230 1.02197 0.93613 1.07113 1.20026 0.86301 0.86596 0.74929 1.90691 1.17419 1.86007 1.50186 1.45413 1.09980 1.04378 1.74874 1.21838 0.99114 0.80405 0.98466 0.90225 1.23376 0.97297 0.97951 0.97053 1.22977 0.94791 0.89703 0.95633 0.88181 1.60394 1.14377 1.12589 1.43178 1.21464 0.95231 0.94027 0.92826 1.22277 1.00935 0.97747 0.93523 0.86694 1.23202 0.95280 1.03367 0.97159 1.22270 0.90973 0.97984 1.05375 1.22586 0.95655 0.96564 1.00836 1.23708 0.98843 0.88132 0.92524 1.88900 1.27788 1.53065 1.62657 1.22610 0.81252 0.94668 1.01047 1.24142 0.99478 1.00750 0.97013 0.92850 0.86942 0.86975 0.74669 0.87444 0.90002 0.83022 0.91046 0.94876 0.88174 0.87496 0.90316 0.89211 0.91306 0.88035 0.91306 0.89422 0.92382 0.87988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.96 13.67 21.65 0.30 -57.66 16 2 C -0.02 -1.12 5.49 84.86 0.47 -0.65 16 3 Si 1.14 49.10 29.92 68.60 2.05 51.16 16 4 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.61 -35.26 9.50 67.95 0.65 -34.61 16 8 H 0.08 4.06 7.80 -2.91 -0.02 4.04 16 9 S -0.20 -10.73 19.60 -56.49 -1.11 -11.84 16 10 C -0.11 -4.28 6.16 71.24 0.44 -3.84 16 11 C 0.54 19.24 7.85 87.66 0.69 19.93 16 12 O -0.56 -25.78 15.46 -3.03 -0.05 -25.82 16 13 N -0.69 -16.57 5.26 -440.02 -2.32 -18.88 16 14 C 0.11 2.25 4.32 45.51 0.20 2.45 16 15 H 0.08 2.11 7.47 -2.38 -0.02 2.09 16 16 C -0.12 -1.66 7.63 31.12 0.24 -1.42 16 17 C 0.08 1.01 4.06 45.44 0.18 1.20 16 18 H 0.10 1.22 7.87 -2.39 -0.02 1.20 16 19 N -0.68 -7.52 6.62 -488.87 -3.24 -10.75 16 20 C 0.09 0.98 5.14 86.30 0.44 1.43 16 21 C -0.13 -1.20 5.84 -11.03 -0.06 -1.26 16 22 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 23 C -0.15 -1.23 9.94 30.37 0.30 -0.93 16 24 C -0.17 -1.66 2.44 -52.29 -0.13 -1.79 16 25 C -0.12 -1.16 6.22 31.69 0.20 -0.96 16 26 C 0.04 0.48 7.73 72.73 0.56 1.04 16 27 O -0.40 -6.68 11.53 -148.98 -1.72 -8.40 16 28 C 0.08 0.97 7.50 72.09 0.54 1.51 16 29 C -0.17 -2.88 7.49 31.12 0.23 -2.65 16 30 H 0.26 17.21 7.12 -92.71 -0.66 16.55 16 31 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 32 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 33 H 0.42 7.10 8.70 -92.71 -0.81 6.29 16 34 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.35 3.44 8.19 -89.69 -0.73 2.70 16 37 H 0.07 0.84 7.72 -2.39 -0.02 0.82 16 38 H 0.03 0.36 7.88 -2.39 -0.02 0.34 16 39 H 0.10 0.78 8.04 -2.39 -0.02 0.76 16 40 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.08 0.82 7.71 -2.39 -0.02 0.81 16 42 H 0.09 0.70 8.13 -2.39 -0.02 0.68 16 43 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.10 0.89 8.14 -2.38 -0.02 0.88 16 45 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.10 1.48 7.82 -2.39 -0.02 1.46 16 Total: -1.00 -77.85 404.72 -1.60 -79.45 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -0.47 Total: 23.33 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: 4.94 Total: -20.57 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -5.26 Total: -87.30 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -1.77 Total: -34.22 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 2.05 Total: 51.16 kcal Atomic # 16 Polarization: -10.73 SS G_CDS: -1.11 Total: -11.84 kcal Total: -77.85 -1.60 -79.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317071221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.533 kcal (2) G-P(sol) polarization free energy of solvation -77.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds