Wall clock time and date at job start Sat Apr 11 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86799 * 119.99936 * 2 1 4 4 H 1.48495 * 109.47335 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47035 * 300.00493 * 3 2 1 6 6 H 1.48505 * 109.46994 * 59.99716 * 3 2 1 7 7 C 1.38801 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99950 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99782 * 359.97438 * 7 2 1 10 10 C 1.81007 * 99.99820 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47276 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99754 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99929 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99971 * 180.02562 * 13 11 10 15 15 H 1.09005 * 112.84724 * 336.19709 * 14 13 11 16 16 C 1.54049 * 113.68747 * 107.46997 * 14 13 11 17 17 C 1.53786 * 86.98426 * 89.12986 * 16 14 13 18 18 H 1.09002 * 113.61357 * 270.83585 * 17 16 14 19 19 N 1.46900 * 113.61608 * 140.01769 * 17 16 14 20 20 C 1.46895 * 110.99924 * 105.85932 * 19 17 16 21 21 C 1.53005 * 109.47286 * 180.02562 * 20 19 17 22 22 H 1.09001 * 115.55890 * 330.77593 * 21 20 19 23 23 C 1.53171 * 117.52214 * 116.62664 * 21 20 19 24 24 C 1.52124 * 117.52306 * 185.00466 * 21 20 19 25 25 C 1.54036 * 121.47460 * 141.71457 * 24 21 20 26 26 C 1.55187 * 101.83067 * 195.70647 * 25 24 21 27 27 O 1.44455 * 103.63199 * 36.32533 * 26 25 24 28 28 C 1.43991 * 107.05079 * 320.43214 * 27 26 25 29 29 C 1.53781 * 87.17350 * 25.42668 * 17 16 14 30 30 H 0.96993 * 120.00455 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.46682 * 59.99926 * 10 9 7 32 32 H 1.09003 * 109.47071 * 300.00443 * 10 9 7 33 33 H 0.97002 * 120.00225 * 0.02562 * 13 11 10 34 34 H 1.08992 * 113.69868 * 334.61096 * 16 14 13 35 35 H 1.09000 * 113.61076 * 203.62855 * 16 14 13 36 36 H 1.00902 * 110.99925 * 341.90938 * 19 17 16 37 37 H 1.08994 * 109.47448 * 300.00310 * 20 19 17 38 38 H 1.09001 * 109.47145 * 60.00387 * 20 19 17 39 39 H 1.09003 * 117.52489 * 214.84974 * 23 21 20 40 40 H 1.09001 * 117.52363 * 0.02562 * 23 21 20 41 41 H 1.09002 * 110.95880 * 313.83954 * 25 24 21 42 42 H 1.09001 * 110.95488 * 77.57191 * 25 24 21 43 43 H 1.09000 * 110.58841 * 277.78994 * 26 25 24 44 44 H 1.08996 * 110.71984 * 154.92905 * 26 25 24 45 45 H 1.09003 * 109.97233 * 266.93972 * 28 27 26 46 46 H 1.08993 * 109.97103 * 145.66738 * 28 27 26 47 47 H 1.08999 * 113.61567 * 89.07405 * 29 17 16 48 48 H 1.08998 * 113.61196 * 219.97759 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9875 -5.3027 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8443 -6.3430 -0.0033 14 6 2.3307 -7.7151 -0.0034 15 1 1.3220 -7.7894 0.4031 16 6 2.5087 -8.4424 -1.3497 17 6 3.8818 -8.8990 -0.8287 18 1 4.6886 -8.2021 -1.0556 19 7 4.2119 -10.2871 -1.1782 20 6 5.2210 -10.3358 -2.2445 21 6 5.5378 -11.7944 -2.5808 22 1 5.4213 -12.5023 -1.7601 23 6 5.2014 -12.2844 -3.9925 24 6 6.6497 -12.0589 -3.5847 25 6 7.6279 -13.2359 -3.4099 26 6 8.7672 -12.8510 -4.3908 27 8 8.8437 -11.4131 -4.2764 28 6 7.4926 -10.9247 -4.1800 29 6 3.3113 -8.7400 0.5904 30 1 -0.4850 0.8399 0.0004 31 1 3.1252 -3.7317 0.8875 32 1 3.1239 -3.7309 -0.8925 33 1 3.8011 -6.1834 -0.0043 34 1 2.5679 -7.7708 -2.2060 35 1 1.8047 -9.2608 -1.5002 36 1 3.3838 -10.8007 -1.4403 37 1 4.8362 -9.8340 -3.1322 38 1 6.1289 -9.8346 -1.9087 39 1 4.8633 -13.3150 -4.1008 40 1 4.7549 -11.5675 -4.6815 41 1 7.9964 -13.2877 -2.3854 42 1 7.1621 -14.1767 -3.7033 43 1 8.5104 -13.1415 -5.4095 44 1 9.7082 -13.3104 -4.0881 45 1 7.1194 -10.6639 -5.1704 46 1 7.4576 -10.0527 -3.5271 47 1 2.8262 -9.6396 0.9694 48 1 4.0179 -8.3084 1.2992 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317071222.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:33 Heat of formation + Delta-G solvation = -37.568322 kcal Electronic energy + Delta-G solvation = -25937.330646 eV Core-core repulsion = 22119.659079 eV Total energy + Delta-G solvation = -3817.671567 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.55003 -40.10618 -38.31051 -37.10527 -34.46425 -32.49843 -32.42689 -30.78536 -29.08336 -27.84514 -26.29926 -25.88930 -25.48894 -23.37648 -23.22410 -21.44367 -20.82796 -19.89694 -19.28191 -17.86186 -16.97784 -16.65060 -16.36059 -16.16088 -15.92163 -15.57592 -15.22238 -14.96122 -14.81359 -14.67112 -14.35438 -14.03118 -13.63975 -13.37311 -13.27349 -13.10579 -12.91836 -12.76895 -12.63524 -12.60736 -12.09153 -11.96812 -11.88223 -11.69971 -11.39007 -11.07923 -11.02975 -10.93670 -10.76875 -10.65710 -10.45563 -10.29717 -10.01352 -9.81213 -9.43125 -9.08777 -8.94960 -8.68352 -8.24533 -6.51173 -6.22779 -3.93365 3.00019 3.04195 3.06850 3.20957 3.27471 3.32019 3.40799 3.64704 3.68741 3.83902 4.19357 4.19465 4.24703 4.37257 4.41521 4.49841 4.66792 4.71267 4.75055 4.81873 4.91451 4.95765 5.12122 5.12647 5.14206 5.20574 5.21224 5.24031 5.26159 5.38555 5.43941 5.46420 5.49151 5.49844 5.58557 5.64695 5.74787 5.79767 5.80693 5.87348 6.00030 6.12349 6.35121 6.60014 6.75550 7.00188 7.58996 7.68863 8.34486 8.59205 9.22757 10.84726 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017523 B = 0.001630 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.552104 B =17172.474308 C =18330.587308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.516 6.516 13 N -0.722 5.722 14 C 0.125 3.875 15 H 0.104 0.896 16 C -0.181 4.181 17 C 0.066 3.934 18 H 0.096 0.904 19 N -0.676 5.676 20 C 0.086 3.914 21 C -0.126 4.126 22 H 0.117 0.883 23 C -0.162 4.162 24 C -0.161 4.161 25 C -0.119 4.119 26 C 0.048 3.952 27 O -0.377 6.377 28 C 0.082 3.918 29 C -0.133 4.133 30 H 0.268 0.732 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.398 0.602 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.345 0.655 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.093 0.907 45 H 0.062 0.938 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.062 -28.901 -6.638 33.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.321 3.679 12 O -0.390 6.390 13 N -0.375 5.375 14 C 0.018 3.982 15 H 0.122 0.878 16 C -0.222 4.222 17 C -0.044 4.044 18 H 0.114 0.886 19 N -0.305 5.305 20 C -0.043 4.043 21 C -0.144 4.144 22 H 0.135 0.865 23 C -0.199 4.199 24 C -0.162 4.162 25 C -0.157 4.157 26 C -0.028 4.028 27 O -0.295 6.295 28 C 0.006 3.994 29 C -0.172 4.172 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.232 0.768 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.163 0.837 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.111 0.889 45 H 0.080 0.920 46 H 0.106 0.894 47 H 0.115 0.885 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.557 -29.060 -6.132 32.648 hybrid contribution 1.676 1.430 -0.868 2.368 sum 15.233 -27.630 -6.999 32.318 Atomic orbital electron populations 1.70024 1.05954 1.27365 1.46933 1.24995 0.95027 0.99044 0.94524 0.86114 0.79587 0.81866 0.77910 1.19615 1.20566 1.20547 1.22914 0.94954 0.91636 1.58865 0.90860 1.85404 1.04896 0.96346 1.96715 1.23538 1.06613 0.95328 1.04956 1.20338 0.86553 0.86259 0.74793 1.90701 1.15375 1.85535 1.47340 1.45716 1.09711 1.04687 1.77381 1.21654 0.99318 0.81151 0.96082 0.87802 1.24206 0.97950 1.01034 0.98978 1.23117 0.95692 0.89025 0.96571 0.88617 1.60415 1.15276 1.13015 1.41824 1.21549 0.96092 0.93721 0.92948 1.22326 1.00905 0.98094 0.93093 0.86534 1.23160 0.95835 1.02799 0.98078 1.22264 0.90905 0.98187 1.04869 1.22609 0.95237 0.96889 1.00934 1.23557 0.99176 0.81586 0.98503 1.88944 1.25392 1.20372 1.94829 1.22521 0.81447 0.95585 0.99889 1.23435 0.98314 0.98935 0.96501 0.92224 0.89146 0.89237 0.76826 0.91008 0.89208 0.83658 0.94733 0.90470 0.88322 0.88409 0.89919 0.90095 0.92101 0.88855 0.91961 0.89413 0.88493 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 8 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 11 C 0.53 9.84 7.85 -10.99 -0.09 9.75 16 12 O -0.52 -11.63 15.46 5.55 0.09 -11.54 16 13 N -0.72 -9.37 5.27 -52.88 -0.28 -9.65 16 14 C 0.12 1.41 4.33 -66.97 -0.29 1.12 16 15 H 0.10 1.39 7.46 -51.93 -0.39 1.00 16 16 C -0.18 -1.69 7.52 -25.77 -0.19 -1.89 16 17 C 0.07 0.52 4.04 -66.90 -0.27 0.25 16 18 H 0.10 0.76 7.88 -51.93 -0.41 0.35 16 19 N -0.68 -4.72 6.61 -105.87 -0.70 -5.42 16 20 C 0.09 0.56 4.97 -3.82 -0.02 0.54 16 21 C -0.13 -0.74 5.83 -90.98 -0.53 -1.27 16 22 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 23 C -0.16 -0.84 9.94 -27.08 -0.27 -1.11 16 24 C -0.16 -0.97 2.44 -154.68 -0.38 -1.35 16 25 C -0.12 -0.63 6.94 -25.03 -0.17 -0.80 16 26 C 0.05 0.29 7.73 38.32 0.30 0.58 16 27 O -0.38 -3.39 11.53 -35.23 -0.41 -3.79 16 28 C 0.08 0.59 7.19 37.33 0.27 0.86 16 29 C -0.13 -1.12 7.63 -25.92 -0.20 -1.32 16 30 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 32 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 33 H 0.40 4.05 8.70 -40.82 -0.36 3.69 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.75 7.83 -51.93 -0.41 0.34 16 36 H 0.34 2.18 8.21 -39.29 -0.32 1.86 16 37 H 0.03 0.23 7.88 -51.93 -0.41 -0.18 16 38 H 0.08 0.55 7.38 -51.93 -0.38 0.17 16 39 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.10 0.51 8.04 -51.93 -0.42 0.09 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.32 8.13 -51.93 -0.42 -0.10 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 0.62 6.78 -51.93 -0.35 0.26 16 47 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 405.06 15.07 6.10 6.10 Total: -1.00 -34.40 405.06 -11.18 -45.57 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -8.06 Total: 2.04 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -1.42 Total: -10.43 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: -0.25 Total: -40.49 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.32 Total: -15.34 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.40 -11.18 -45.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317071222.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.006 kcal (2) G-P(sol) polarization free energy of solvation -34.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds