Wall clock time and date at job start Sat Apr 11 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86799 * 119.99936 * 2 1 4 4 H 1.48495 * 109.47335 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47035 * 300.00493 * 3 2 1 6 6 H 1.48505 * 109.46994 * 59.99716 * 3 2 1 7 7 C 1.38801 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99950 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99782 * 359.97438 * 7 2 1 10 10 C 1.81007 * 99.99820 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47276 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99754 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99929 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99971 * 180.02562 * 13 11 10 15 15 H 1.09005 * 112.84724 * 336.19709 * 14 13 11 16 16 C 1.54049 * 113.68747 * 107.46997 * 14 13 11 17 17 C 1.53786 * 86.98426 * 89.12986 * 16 14 13 18 18 H 1.09002 * 113.61357 * 270.83585 * 17 16 14 19 19 N 1.46900 * 113.61608 * 140.01769 * 17 16 14 20 20 C 1.46895 * 110.99924 * 105.85932 * 19 17 16 21 21 C 1.53005 * 109.47286 * 180.02562 * 20 19 17 22 22 H 1.09001 * 115.55890 * 330.77593 * 21 20 19 23 23 C 1.53171 * 117.52214 * 116.62664 * 21 20 19 24 24 C 1.52124 * 117.52306 * 185.00466 * 21 20 19 25 25 C 1.54036 * 121.47460 * 141.71457 * 24 21 20 26 26 C 1.55187 * 101.83067 * 195.70647 * 25 24 21 27 27 O 1.44455 * 103.63199 * 36.32533 * 26 25 24 28 28 C 1.43991 * 107.05079 * 320.43214 * 27 26 25 29 29 C 1.53781 * 87.17350 * 25.42668 * 17 16 14 30 30 H 0.96993 * 120.00455 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.46682 * 59.99926 * 10 9 7 32 32 H 1.09003 * 109.47071 * 300.00443 * 10 9 7 33 33 H 0.97002 * 120.00225 * 0.02562 * 13 11 10 34 34 H 1.08992 * 113.69868 * 334.61096 * 16 14 13 35 35 H 1.09000 * 113.61076 * 203.62855 * 16 14 13 36 36 H 1.00902 * 110.99925 * 341.90938 * 19 17 16 37 37 H 1.08994 * 109.47448 * 300.00310 * 20 19 17 38 38 H 1.09001 * 109.47145 * 60.00387 * 20 19 17 39 39 H 1.09003 * 117.52489 * 214.84974 * 23 21 20 40 40 H 1.09001 * 117.52363 * 0.02562 * 23 21 20 41 41 H 1.09002 * 110.95880 * 313.83954 * 25 24 21 42 42 H 1.09001 * 110.95488 * 77.57191 * 25 24 21 43 43 H 1.09000 * 110.58841 * 277.78994 * 26 25 24 44 44 H 1.08996 * 110.71984 * 154.92905 * 26 25 24 45 45 H 1.09003 * 109.97233 * 266.93972 * 28 27 26 46 46 H 1.08993 * 109.97103 * 145.66738 * 28 27 26 47 47 H 1.08999 * 113.61567 * 89.07405 * 29 17 16 48 48 H 1.08998 * 113.61196 * 219.97759 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9875 -5.3027 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8443 -6.3430 -0.0033 14 6 2.3307 -7.7151 -0.0034 15 1 1.3220 -7.7894 0.4031 16 6 2.5087 -8.4424 -1.3497 17 6 3.8818 -8.8990 -0.8287 18 1 4.6886 -8.2021 -1.0556 19 7 4.2119 -10.2871 -1.1782 20 6 5.2210 -10.3358 -2.2445 21 6 5.5378 -11.7944 -2.5808 22 1 5.4213 -12.5023 -1.7601 23 6 5.2014 -12.2844 -3.9925 24 6 6.6497 -12.0589 -3.5847 25 6 7.6279 -13.2359 -3.4099 26 6 8.7672 -12.8510 -4.3908 27 8 8.8437 -11.4131 -4.2764 28 6 7.4926 -10.9247 -4.1800 29 6 3.3113 -8.7400 0.5904 30 1 -0.4850 0.8399 0.0004 31 1 3.1252 -3.7317 0.8875 32 1 3.1239 -3.7309 -0.8925 33 1 3.8011 -6.1834 -0.0043 34 1 2.5679 -7.7708 -2.2060 35 1 1.8047 -9.2608 -1.5002 36 1 3.3838 -10.8007 -1.4403 37 1 4.8362 -9.8340 -3.1322 38 1 6.1289 -9.8346 -1.9087 39 1 4.8633 -13.3150 -4.1008 40 1 4.7549 -11.5675 -4.6815 41 1 7.9964 -13.2877 -2.3854 42 1 7.1621 -14.1767 -3.7033 43 1 8.5104 -13.1415 -5.4095 44 1 9.7082 -13.3104 -4.0881 45 1 7.1194 -10.6639 -5.1704 46 1 7.4576 -10.0527 -3.5271 47 1 2.8262 -9.6396 0.9694 48 1 4.0179 -8.3084 1.2992 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317071222.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:32 Heat of formation + Delta-G solvation = -62.115964 kcal Electronic energy + Delta-G solvation = -25938.395112 eV Core-core repulsion = 22119.659079 eV Total energy + Delta-G solvation = -3818.736032 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.29204 -40.90021 -39.47774 -37.68000 -35.32781 -34.59299 -33.54608 -31.29117 -30.53442 -28.37573 -27.69361 -26.87562 -26.63806 -24.08331 -23.75233 -22.23290 -21.78094 -20.64777 -19.97525 -19.81121 -18.01274 -17.42798 -17.11963 -17.00449 -16.88698 -16.65807 -16.48514 -16.22668 -15.99757 -15.69336 -15.27442 -14.90909 -14.75073 -14.50664 -14.26833 -13.90208 -13.83459 -13.65872 -13.41167 -13.31884 -13.23245 -13.16772 -12.91890 -12.76902 -12.55118 -12.39366 -12.25068 -11.89517 -11.72140 -11.69753 -11.36278 -11.16567 -10.97700 -10.94034 -10.80840 -10.51207 -10.28331 -10.08075 -9.31376 -8.67615 -8.35621 -6.13709 1.26151 1.40916 1.46411 1.57684 1.57947 2.23730 2.27784 2.62589 2.93342 2.98692 3.12973 3.30949 3.37309 3.53764 3.66909 3.76485 3.86286 3.93584 3.97165 4.00022 4.08225 4.24629 4.29522 4.32464 4.45259 4.49420 4.50107 4.62328 4.65904 4.72325 4.76242 4.79885 4.82152 4.85682 4.88238 4.91655 4.99223 5.05064 5.06564 5.09267 5.13567 5.29018 5.41515 5.58119 5.86208 6.09508 6.19333 6.46144 6.50539 7.05907 7.23838 8.73891 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017523 B = 0.001630 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.552104 B =17172.474308 C =18330.587308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.130 4.130 11 C 0.536 3.464 12 O -0.565 6.565 13 N -0.696 5.696 14 C 0.108 3.892 15 H 0.080 0.920 16 C -0.174 4.174 17 C 0.079 3.921 18 H 0.100 0.900 19 N -0.674 5.674 20 C 0.089 3.911 21 C -0.125 4.125 22 H 0.117 0.883 23 C -0.153 4.153 24 C -0.167 4.167 25 C -0.116 4.116 26 C 0.042 3.958 27 O -0.405 6.405 28 C 0.078 3.922 29 C -0.117 4.117 30 H 0.271 0.729 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.415 0.585 34 H 0.057 0.943 35 H 0.101 0.899 36 H 0.350 0.650 37 H 0.033 0.967 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.068 0.932 44 H 0.104 0.896 45 H 0.063 0.937 46 H 0.084 0.916 47 H 0.107 0.893 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.366 -30.104 -6.788 35.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.281 4.281 11 C 0.322 3.678 12 O -0.443 6.443 13 N -0.349 5.349 14 C 0.002 3.998 15 H 0.098 0.902 16 C -0.215 4.215 17 C -0.032 4.032 18 H 0.118 0.882 19 N -0.304 5.304 20 C -0.040 4.040 21 C -0.143 4.143 22 H 0.135 0.865 23 C -0.190 4.190 24 C -0.167 4.167 25 C -0.153 4.153 26 C -0.034 4.034 27 O -0.325 6.325 28 C 0.002 3.998 29 C -0.156 4.156 30 H 0.080 0.920 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.252 0.748 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.170 0.830 37 H 0.051 0.949 38 H 0.090 0.910 39 H 0.128 0.872 40 H 0.116 0.884 41 H 0.098 0.902 42 H 0.115 0.885 43 H 0.086 0.914 44 H 0.122 0.878 45 H 0.082 0.918 46 H 0.102 0.898 47 H 0.126 0.874 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 15.916 -30.316 -6.286 34.812 hybrid contribution 1.007 1.654 -0.837 2.110 sum 16.923 -28.662 -7.123 34.039 Atomic orbital electron populations 1.70185 1.07973 1.28566 1.48048 1.26127 0.95964 1.03317 0.93725 0.84902 0.78607 0.76325 0.78088 1.18037 1.19933 1.19909 1.23247 0.95369 0.92001 1.58808 0.89890 1.85581 1.10548 0.99244 1.97050 1.23378 1.03578 0.94332 1.06827 1.20075 0.86257 0.86661 0.74775 1.90689 1.17449 1.86043 1.50127 1.45436 1.09983 1.04388 1.75057 1.21870 0.99083 0.80528 0.98309 0.90223 1.24195 0.99447 1.00758 0.97088 1.22991 0.94806 0.89680 0.95724 0.88218 1.60394 1.15613 1.12251 1.42121 1.21508 0.95636 0.94230 0.92638 1.22251 1.01040 0.97581 0.93430 0.86525 1.23207 0.94976 1.03416 0.97379 1.22272 0.91260 0.98075 1.05134 1.22607 0.94801 0.97253 1.00626 1.23748 1.00153 0.80269 0.99238 1.88906 1.26441 1.22135 1.94993 1.22573 0.81207 0.96019 1.00048 1.23364 0.97314 0.97993 0.96953 0.91979 0.87134 0.87233 0.74756 0.92413 0.88020 0.82996 0.94880 0.91049 0.87196 0.88405 0.90172 0.88541 0.91387 0.87813 0.91845 0.89754 0.87429 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.07 13.22 21.65 0.29 -55.78 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.64 29.55 68.60 2.03 45.66 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.55 -31.24 9.50 67.95 0.65 -30.60 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 10 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 11 C 0.54 19.66 7.85 87.66 0.69 20.34 16 12 O -0.57 -26.23 15.46 -3.05 -0.05 -26.28 16 13 N -0.70 -17.14 5.27 -439.60 -2.32 -19.45 16 14 C 0.11 2.33 4.33 45.61 0.20 2.53 16 15 H 0.08 2.15 7.46 -2.38 -0.02 2.14 16 16 C -0.17 -3.01 7.52 31.21 0.23 -2.77 16 17 C 0.08 1.05 4.04 45.44 0.18 1.23 16 18 H 0.10 1.30 7.88 -2.39 -0.02 1.28 16 19 N -0.67 -7.80 6.61 -488.85 -3.23 -11.03 16 20 C 0.09 0.99 4.97 86.31 0.43 1.42 16 21 C -0.12 -1.21 5.83 -11.02 -0.06 -1.28 16 22 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 23 C -0.15 -1.26 9.94 30.37 0.30 -0.96 16 24 C -0.17 -1.73 2.44 -52.29 -0.13 -1.86 16 25 C -0.12 -1.01 6.94 31.69 0.22 -0.79 16 26 C 0.04 0.45 7.73 72.73 0.56 1.01 16 27 O -0.41 -7.06 11.53 -148.98 -1.72 -8.78 16 28 C 0.08 1.06 7.19 72.09 0.52 1.58 16 29 C -0.12 -1.71 7.63 31.12 0.24 -1.47 16 30 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 31 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 32 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 33 H 0.42 7.42 8.70 -92.71 -0.81 6.61 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.10 1.52 7.83 -2.39 -0.02 1.50 16 36 H 0.35 3.55 8.21 -89.69 -0.74 2.81 16 37 H 0.03 0.39 7.88 -2.39 -0.02 0.37 16 38 H 0.07 0.90 7.38 -2.39 -0.02 0.88 16 39 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.10 0.83 8.04 -2.39 -0.02 0.81 16 41 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.10 0.53 8.13 -2.39 -0.02 0.52 16 43 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.08 1.14 6.78 -2.39 -0.02 1.13 16 47 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -76.86 405.06 -1.81 -78.67 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -0.58 Total: 21.64 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 4.93 Total: -15.07 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -5.26 Total: -86.27 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -1.77 Total: -35.06 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -76.86 -1.81 -78.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317071222.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.555 kcal (2) G-P(sol) polarization free energy of solvation -76.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds