Wall clock time and date at job start Sat Apr 11 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86807 * 119.99748 * 2 1 4 4 H 1.48492 * 109.47224 * 270.00282 * 3 2 1 5 5 H 1.48506 * 109.46814 * 30.00477 * 3 2 1 6 6 H 1.48505 * 109.46882 * 149.99959 * 3 2 1 7 7 C 1.38796 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99731 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99939 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99628 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46984 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99905 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00197 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00015 * 180.02562 * 13 11 10 15 15 H 1.09004 * 112.90889 * 336.25053 * 14 13 11 16 16 C 1.53784 * 113.61524 * 107.50411 * 14 13 11 17 17 C 1.53779 * 87.08045 * 89.11591 * 16 14 13 18 18 H 1.09006 * 113.61307 * 270.88660 * 17 16 14 19 19 N 1.46908 * 113.69212 * 139.99344 * 17 16 14 20 20 C 1.46898 * 111.00041 * 107.46219 * 19 17 16 21 21 C 1.52994 * 109.47371 * 180.02562 * 20 19 17 22 22 H 1.09001 * 115.56219 * 29.21668 * 21 20 19 23 23 C 1.53185 * 117.52319 * 243.36859 * 21 20 19 24 24 C 1.52131 * 59.77327 * 252.57266 * 23 21 20 25 25 C 1.54033 * 121.47250 * 249.14360 * 24 23 21 26 26 C 1.55181 * 101.82914 * 195.70372 * 25 24 23 27 27 O 1.44454 * 103.63503 * 36.32636 * 26 25 24 28 28 C 1.43999 * 107.04775 * 320.43414 * 27 26 25 29 29 C 1.53779 * 87.08402 * 25.43458 * 17 16 14 30 30 H 0.97000 * 120.00195 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.47447 * 60.00272 * 10 9 7 32 32 H 1.09000 * 109.47074 * 299.99882 * 10 9 7 33 33 H 0.96998 * 119.99607 * 0.02562 * 13 11 10 34 34 H 1.09002 * 113.61478 * 203.66556 * 16 14 13 35 35 H 1.09004 * 113.61162 * 334.56734 * 16 14 13 36 36 H 1.00900 * 110.99916 * 231.41910 * 19 17 16 37 37 H 1.09002 * 109.47073 * 300.00799 * 20 19 17 38 38 H 1.08999 * 109.46848 * 59.99924 * 20 19 17 39 39 H 1.08995 * 117.51678 * 359.97438 * 23 21 20 40 40 H 1.09003 * 117.52340 * 145.14865 * 23 21 20 41 41 H 1.09000 * 110.95777 * 313.83305 * 25 24 23 42 42 H 1.09000 * 110.96105 * 77.56728 * 25 24 23 43 43 H 1.09005 * 110.58941 * 277.79057 * 26 25 24 44 44 H 1.08998 * 110.59723 * 154.86678 * 26 25 24 45 45 H 1.08997 * 109.97364 * 266.93916 * 28 27 26 46 46 H 1.08995 * 110.00208 * 145.68308 * 28 27 26 47 47 H 1.08997 * 113.61646 * 220.02209 * 29 17 16 48 48 H 1.09000 * 113.61527 * 89.11480 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5479 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7913 -5.5022 -0.0021 13 7 2.8443 -6.3430 -0.0018 14 6 2.3306 -7.7150 -0.0030 15 1 1.3210 -7.7904 0.4011 16 6 2.5117 -8.4395 -1.3473 17 6 3.8842 -8.8971 -0.8261 18 1 4.6912 -8.1995 -1.0503 19 7 4.2159 -10.2847 -1.1765 20 6 5.2538 -10.3318 -2.2149 21 6 5.5714 -11.7897 -2.5529 22 1 4.7495 -12.4932 -2.4198 23 6 6.9886 -12.2919 -2.2597 24 6 6.5428 -12.0514 -3.6942 25 6 6.3320 -13.2184 -4.6772 26 6 6.3016 -12.4823 -6.0430 27 8 7.2722 -11.4247 -5.8815 28 6 7.1210 -10.9135 -4.5439 29 6 3.3104 -8.7402 0.5919 30 1 -0.4850 0.8400 0.0004 31 1 3.1246 -3.7313 0.8895 32 1 3.1245 -3.7312 -0.8905 33 1 3.8010 -6.1834 -0.0015 34 1 1.8079 -9.2576 -1.5008 35 1 2.5718 -7.7655 -2.2019 36 1 4.4974 -10.8064 -0.3599 37 1 4.8964 -9.8213 -3.1092 38 1 6.1549 -9.8383 -1.8506 39 1 7.6943 -11.5832 -1.8264 40 1 7.0991 -13.3260 -1.9333 41 1 7.1636 -13.9215 -4.6317 42 1 5.3853 -13.7235 -4.4854 43 1 5.3114 -12.0681 -6.2333 44 1 6.5980 -13.1550 -6.8478 45 1 6.4368 -10.0649 -4.5447 46 1 8.0903 -10.6095 -4.1491 47 1 4.0151 -8.3090 1.3029 48 1 2.8249 -9.6405 0.9686 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317071226.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:35 Heat of formation + Delta-G solvation = -37.006151 kcal Electronic energy + Delta-G solvation = -25982.682420 eV Core-core repulsion = 22165.035231 eV Total energy + Delta-G solvation = -3817.647189 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.53713 -40.08286 -38.27501 -37.09935 -34.48492 -32.51351 -32.42485 -30.77487 -29.08734 -27.84890 -26.44690 -25.84299 -25.48401 -23.36085 -22.99388 -21.54571 -20.81849 -19.84755 -19.21849 -17.85868 -16.84768 -16.75900 -16.33380 -16.10067 -16.06150 -15.49360 -15.42127 -14.93665 -14.80932 -14.70753 -14.30171 -13.99356 -13.84793 -13.48758 -13.22406 -13.14195 -12.78550 -12.72717 -12.59558 -12.48638 -12.00831 -11.94862 -11.87407 -11.67115 -11.38462 -11.06975 -11.03155 -10.78572 -10.73945 -10.66448 -10.54731 -10.25130 -9.99469 -9.81884 -9.41962 -9.07623 -8.94580 -8.76396 -8.24428 -6.50639 -6.22177 -3.92851 3.00416 3.05599 3.05966 3.21929 3.27326 3.31180 3.43443 3.65226 3.69474 3.85161 4.16081 4.19783 4.23046 4.35680 4.39553 4.47670 4.67930 4.75744 4.78835 4.82094 4.92037 4.97248 5.12164 5.12980 5.14078 5.19843 5.21721 5.25540 5.29048 5.37961 5.38850 5.46017 5.50341 5.52353 5.56932 5.66284 5.75388 5.84985 5.87902 5.94586 6.03492 6.12351 6.36819 6.59963 6.78527 6.97879 7.58898 7.69009 8.34546 8.60124 9.23101 10.85220 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016818 B = 0.001656 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.521503 B =16909.197922 C =17900.253231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.515 6.515 13 N -0.722 5.722 14 C 0.124 3.876 15 H 0.106 0.894 16 C -0.137 4.137 17 C 0.058 3.942 18 H 0.072 0.928 19 N -0.674 5.674 20 C 0.086 3.914 21 C -0.127 4.127 22 H 0.117 0.883 23 C -0.161 4.161 24 C -0.161 4.161 25 C -0.119 4.119 26 C 0.048 3.952 27 O -0.377 6.377 28 C 0.082 3.918 29 C -0.149 4.149 30 H 0.268 0.732 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.397 0.603 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.342 0.658 37 H 0.077 0.923 38 H 0.033 0.967 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.670 -28.525 -4.880 32.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.321 3.679 12 O -0.388 6.388 13 N -0.376 5.376 14 C 0.017 3.983 15 H 0.124 0.876 16 C -0.176 4.176 17 C -0.052 4.052 18 H 0.090 0.910 19 N -0.304 5.304 20 C -0.043 4.043 21 C -0.145 4.145 22 H 0.135 0.865 23 C -0.197 4.197 24 C -0.162 4.162 25 C -0.157 4.157 26 C -0.028 4.028 27 O -0.296 6.296 28 C 0.006 3.994 29 C -0.187 4.187 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.230 0.770 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.161 0.839 37 H 0.096 0.904 38 H 0.051 0.949 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.111 0.889 45 H 0.083 0.917 46 H 0.103 0.897 47 H 0.091 0.909 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 13.125 -28.718 -5.483 32.048 hybrid contribution 3.162 1.475 0.643 3.548 sum 16.288 -27.243 -4.840 32.107 Atomic orbital electron populations 1.70017 1.05942 1.27465 1.46820 1.24993 0.95030 0.99023 0.94530 0.86169 0.79400 0.81577 0.78353 1.20267 1.20731 1.19718 1.22868 0.94906 0.91673 1.58996 0.90940 1.85408 1.04843 0.96285 1.96714 1.23538 1.06628 0.95369 1.04907 1.20326 0.86555 0.86225 0.74826 1.90702 1.15354 1.85511 1.47276 1.45724 1.09638 1.04754 1.77476 1.21608 0.98980 0.80859 0.96819 0.87646 1.23538 0.96567 0.99811 0.97731 1.23131 0.97048 0.89033 0.95975 0.91006 1.60575 1.43406 1.12637 1.13820 1.21558 0.92913 0.93743 0.96058 1.22397 0.93400 0.98047 1.00686 0.86513 1.23086 0.97642 1.02692 0.96322 1.22265 1.04868 0.98240 0.90827 1.22607 1.02891 0.96449 0.93734 1.23568 0.93057 0.88924 0.97290 1.88935 1.57656 1.52630 1.30399 1.22515 1.00766 0.94475 0.81674 1.23603 0.99149 0.99967 0.96028 0.92169 0.89220 0.89241 0.76965 0.88529 0.91273 0.83928 0.90440 0.94906 0.88483 0.88323 0.90113 0.89946 0.91842 0.88873 0.91723 0.89668 0.90927 0.88187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.27 9.50 30.94 0.29 -14.97 16 8 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -3.08 6.16 36.01 0.22 -2.85 16 11 C 0.53 9.87 7.85 -10.98 -0.09 9.78 16 12 O -0.51 -11.65 15.46 5.56 0.09 -11.57 16 13 N -0.72 -9.41 5.26 -53.01 -0.28 -9.69 16 14 C 0.12 1.42 4.32 -67.12 -0.29 1.13 16 15 H 0.11 1.43 7.47 -51.93 -0.39 1.04 16 16 C -0.14 -1.40 7.68 -25.92 -0.20 -1.60 16 17 C 0.06 0.46 4.01 -66.90 -0.27 0.19 16 18 H 0.07 0.57 7.87 -51.93 -0.41 0.16 16 19 N -0.67 -4.66 6.56 -105.87 -0.69 -5.35 16 20 C 0.09 0.56 5.01 -3.83 -0.02 0.55 16 21 C -0.13 -0.73 5.83 -90.97 -0.53 -1.26 16 22 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 23 C -0.16 -0.81 9.95 -27.08 -0.27 -1.08 16 24 C -0.16 -0.98 2.44 -154.68 -0.38 -1.36 16 25 C -0.12 -0.65 6.94 -25.04 -0.17 -0.82 16 26 C 0.05 0.31 7.73 38.31 0.30 0.60 16 27 O -0.38 -3.49 11.53 -35.23 -0.41 -3.89 16 28 C 0.08 0.60 7.12 37.33 0.27 0.87 16 29 C -0.15 -1.17 7.40 -25.92 -0.19 -1.36 16 30 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 32 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 33 H 0.40 4.03 8.70 -40.82 -0.36 3.67 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.34 1.99 8.55 -39.29 -0.34 1.65 16 37 H 0.08 0.60 7.40 -51.93 -0.38 0.22 16 38 H 0.03 0.21 7.87 -51.93 -0.41 -0.20 16 39 H 0.10 0.47 8.04 -51.93 -0.42 0.05 16 40 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.37 8.13 -51.93 -0.42 -0.05 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.47 6.90 -51.93 -0.36 0.11 16 46 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 405.65 15.07 6.11 6.11 Total: -1.00 -34.38 405.65 -11.20 -45.58 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -8.10 Total: 1.87 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -1.42 Total: -10.19 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: -0.24 Total: -40.46 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.32 Total: -15.46 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.38 -11.20 -45.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317071226.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.575 kcal (2) G-P(sol) polarization free energy of solvation -34.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds