Wall clock time and date at job start Sat Apr 11 2020 06:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86807 * 119.99748 * 2 1 4 4 H 1.48492 * 109.47224 * 270.00282 * 3 2 1 5 5 H 1.48506 * 109.46814 * 30.00477 * 3 2 1 6 6 H 1.48505 * 109.46882 * 149.99959 * 3 2 1 7 7 C 1.38796 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99731 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99939 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99628 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46984 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99905 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00197 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00015 * 180.02562 * 13 11 10 15 15 H 1.09004 * 112.90889 * 336.25053 * 14 13 11 16 16 C 1.53784 * 113.61524 * 107.50411 * 14 13 11 17 17 C 1.53779 * 87.08045 * 89.11591 * 16 14 13 18 18 H 1.09006 * 113.61307 * 270.88660 * 17 16 14 19 19 N 1.46908 * 113.69212 * 139.99344 * 17 16 14 20 20 C 1.46898 * 111.00041 * 107.46219 * 19 17 16 21 21 C 1.52994 * 109.47371 * 180.02562 * 20 19 17 22 22 H 1.09001 * 115.56219 * 29.21668 * 21 20 19 23 23 C 1.53185 * 117.52319 * 243.36859 * 21 20 19 24 24 C 1.52131 * 59.77327 * 252.57266 * 23 21 20 25 25 C 1.54033 * 121.47250 * 249.14360 * 24 23 21 26 26 C 1.55181 * 101.82914 * 195.70372 * 25 24 23 27 27 O 1.44454 * 103.63503 * 36.32636 * 26 25 24 28 28 C 1.43999 * 107.04775 * 320.43414 * 27 26 25 29 29 C 1.53779 * 87.08402 * 25.43458 * 17 16 14 30 30 H 0.97000 * 120.00195 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.47447 * 60.00272 * 10 9 7 32 32 H 1.09000 * 109.47074 * 299.99882 * 10 9 7 33 33 H 0.96998 * 119.99607 * 0.02562 * 13 11 10 34 34 H 1.09002 * 113.61478 * 203.66556 * 16 14 13 35 35 H 1.09004 * 113.61162 * 334.56734 * 16 14 13 36 36 H 1.00900 * 110.99916 * 231.41910 * 19 17 16 37 37 H 1.09002 * 109.47073 * 300.00799 * 20 19 17 38 38 H 1.08999 * 109.46848 * 59.99924 * 20 19 17 39 39 H 1.08995 * 117.51678 * 359.97438 * 23 21 20 40 40 H 1.09003 * 117.52340 * 145.14865 * 23 21 20 41 41 H 1.09000 * 110.95777 * 313.83305 * 25 24 23 42 42 H 1.09000 * 110.96105 * 77.56728 * 25 24 23 43 43 H 1.09005 * 110.58941 * 277.79057 * 26 25 24 44 44 H 1.08998 * 110.59723 * 154.86678 * 26 25 24 45 45 H 1.08997 * 109.97364 * 266.93916 * 28 27 26 46 46 H 1.08995 * 110.00208 * 145.68308 * 28 27 26 47 47 H 1.08997 * 113.61646 * 220.02209 * 29 17 16 48 48 H 1.09000 * 113.61527 * 89.11480 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5479 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7913 -5.5022 -0.0021 13 7 2.8443 -6.3430 -0.0018 14 6 2.3306 -7.7150 -0.0030 15 1 1.3210 -7.7904 0.4011 16 6 2.5117 -8.4395 -1.3473 17 6 3.8842 -8.8971 -0.8261 18 1 4.6912 -8.1995 -1.0503 19 7 4.2159 -10.2847 -1.1765 20 6 5.2538 -10.3318 -2.2149 21 6 5.5714 -11.7897 -2.5529 22 1 4.7495 -12.4932 -2.4198 23 6 6.9886 -12.2919 -2.2597 24 6 6.5428 -12.0514 -3.6942 25 6 6.3320 -13.2184 -4.6772 26 6 6.3016 -12.4823 -6.0430 27 8 7.2722 -11.4247 -5.8815 28 6 7.1210 -10.9135 -4.5439 29 6 3.3104 -8.7402 0.5919 30 1 -0.4850 0.8400 0.0004 31 1 3.1246 -3.7313 0.8895 32 1 3.1245 -3.7312 -0.8905 33 1 3.8010 -6.1834 -0.0015 34 1 1.8079 -9.2576 -1.5008 35 1 2.5718 -7.7655 -2.2019 36 1 4.4974 -10.8064 -0.3599 37 1 4.8964 -9.8213 -3.1092 38 1 6.1549 -9.8383 -1.8506 39 1 7.6943 -11.5832 -1.8264 40 1 7.0991 -13.3260 -1.9333 41 1 7.1636 -13.9215 -4.6317 42 1 5.3853 -13.7235 -4.4854 43 1 5.3114 -12.0681 -6.2333 44 1 6.5980 -13.1550 -6.8478 45 1 6.4368 -10.0649 -4.5447 46 1 8.0903 -10.6095 -4.1491 47 1 4.0151 -8.3090 1.3029 48 1 2.8249 -9.6405 0.9686 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317071226.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:34 Heat of formation + Delta-G solvation = -61.649272 kcal Electronic energy + Delta-G solvation = -25983.751026 eV Core-core repulsion = 22165.035231 eV Total energy + Delta-G solvation = -3818.715795 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.27485 -40.90958 -39.44266 -37.68593 -35.33411 -34.58840 -33.58414 -31.29483 -30.54694 -28.39932 -27.68872 -27.05224 -26.56416 -24.11546 -23.51965 -22.22451 -21.89552 -20.52850 -19.99299 -19.80884 -18.01738 -17.32386 -17.20959 -17.05025 -16.88185 -16.66435 -16.42063 -16.27031 -16.03482 -15.77872 -15.48282 -14.77212 -14.72998 -14.49482 -14.33928 -13.99996 -13.91702 -13.70195 -13.32958 -13.24413 -13.17090 -13.07028 -12.89010 -12.73371 -12.53582 -12.39906 -12.27587 -11.87553 -11.73914 -11.53617 -11.40121 -11.14734 -11.01176 -10.96813 -10.77008 -10.50961 -10.28225 -10.06955 -9.38077 -8.67316 -8.34998 -6.13278 1.26172 1.42219 1.46541 1.56922 1.58598 2.23858 2.28050 2.62335 2.94371 2.99122 3.14483 3.31326 3.37891 3.52227 3.60230 3.73721 3.87855 3.92719 3.96898 4.00802 4.13795 4.22024 4.29784 4.31502 4.44249 4.49234 4.49671 4.59654 4.66237 4.73476 4.76998 4.80980 4.84918 4.86073 4.87703 4.92356 5.01586 5.04103 5.07559 5.10583 5.15204 5.28707 5.41420 5.58690 5.84647 6.11679 6.19394 6.49367 6.51300 7.06233 7.24435 8.74204 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016818 B = 0.001656 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.521503 B =16909.197922 C =17900.253231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.130 4.130 11 C 0.536 3.464 12 O -0.565 6.565 13 N -0.696 5.696 14 C 0.108 3.892 15 H 0.080 0.920 16 C -0.138 4.138 17 C 0.071 3.929 18 H 0.078 0.922 19 N -0.675 5.675 20 C 0.090 3.910 21 C -0.124 4.124 22 H 0.116 0.884 23 C -0.148 4.148 24 C -0.169 4.169 25 C -0.115 4.115 26 C 0.041 3.959 27 O -0.405 6.405 28 C 0.078 3.922 29 C -0.127 4.127 30 H 0.271 0.729 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.415 0.585 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.353 0.647 37 H 0.062 0.938 38 H 0.039 0.961 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.059 0.941 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.583 -29.664 -4.235 35.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.281 4.281 11 C 0.322 3.678 12 O -0.443 6.443 13 N -0.349 5.349 14 C 0.002 3.998 15 H 0.099 0.901 16 C -0.177 4.177 17 C -0.039 4.039 18 H 0.096 0.904 19 N -0.307 5.307 20 C -0.039 4.039 21 C -0.143 4.143 22 H 0.134 0.866 23 C -0.185 4.185 24 C -0.170 4.170 25 C -0.152 4.152 26 C -0.035 4.035 27 O -0.324 6.324 28 C 0.002 3.998 29 C -0.165 4.165 30 H 0.080 0.920 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.252 0.748 34 H 0.114 0.886 35 H 0.070 0.930 36 H 0.173 0.827 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.120 0.880 40 H 0.127 0.873 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.080 0.920 44 H 0.123 0.877 45 H 0.077 0.923 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 16.099 -29.910 -4.834 34.310 hybrid contribution 2.278 1.686 0.397 2.861 sum 18.376 -28.224 -4.437 33.970 Atomic orbital electron populations 1.70185 1.07975 1.28615 1.47972 1.26135 0.95971 1.03332 0.93735 0.84950 0.78214 0.76011 0.78774 1.19361 1.20278 1.18150 1.23209 0.95364 0.91993 1.58903 0.89870 1.85598 1.10554 0.99245 1.97053 1.23376 1.03576 0.94305 1.06824 1.20081 0.86259 0.86668 0.74782 1.90691 1.17490 1.86037 1.50085 1.45429 1.09945 1.04379 1.75120 1.21806 0.99032 0.80420 0.98576 0.90147 1.23521 0.98571 0.99362 0.96287 1.22956 0.95742 0.89811 0.95353 0.90392 1.60461 1.43880 1.11989 1.14405 1.21495 0.92855 0.94249 0.95313 1.22307 0.93807 0.97489 1.00684 0.86578 1.23148 0.96908 1.03374 0.95089 1.22277 1.05438 0.98013 0.91300 1.22600 1.03624 0.96236 0.92770 1.23738 0.92551 0.88711 0.98518 1.88898 1.58542 1.53545 1.31455 1.22576 1.00982 0.94860 0.81416 1.23506 0.97922 0.98863 0.96226 0.91989 0.87056 0.87273 0.74790 0.88579 0.93029 0.82678 0.91987 0.94272 0.87991 0.87293 0.89597 0.88952 0.92019 0.87672 0.92295 0.89296 0.89375 0.86789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.13 13.22 21.65 0.29 -55.84 16 2 C 0.01 0.74 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.58 29.55 68.60 2.03 45.61 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 7 C -0.55 -31.25 9.50 67.95 0.65 -30.61 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 10 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 11 C 0.54 19.72 7.85 87.66 0.69 20.40 16 12 O -0.57 -26.43 15.46 -3.03 -0.05 -26.48 16 13 N -0.70 -17.12 5.26 -440.02 -2.32 -19.43 16 14 C 0.11 2.35 4.32 45.52 0.20 2.55 16 15 H 0.08 2.21 7.47 -2.39 -0.02 2.19 16 16 C -0.14 -2.71 7.68 31.12 0.24 -2.47 16 17 C 0.07 0.95 4.01 45.44 0.18 1.13 16 18 H 0.08 0.99 7.87 -2.38 -0.02 0.97 16 19 N -0.68 -7.64 6.56 -488.85 -3.21 -10.85 16 20 C 0.09 1.00 5.01 86.30 0.43 1.43 16 21 C -0.12 -1.17 5.83 -11.02 -0.06 -1.24 16 22 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 23 C -0.15 -1.13 9.95 30.37 0.30 -0.83 16 24 C -0.17 -1.79 2.44 -52.29 -0.13 -1.92 16 25 C -0.11 -1.07 6.94 31.69 0.22 -0.85 16 26 C 0.04 0.50 7.73 72.73 0.56 1.06 16 27 O -0.40 -7.36 11.53 -148.98 -1.72 -9.08 16 28 C 0.08 1.09 7.12 72.09 0.51 1.61 16 29 C -0.13 -1.63 7.40 31.12 0.23 -1.40 16 30 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 31 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 32 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 33 H 0.41 7.26 8.70 -92.71 -0.81 6.45 16 34 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.35 2.93 8.55 -89.69 -0.77 2.16 16 37 H 0.06 0.89 7.40 -2.39 -0.02 0.88 16 38 H 0.04 0.39 7.87 -2.39 -0.02 0.38 16 39 H 0.10 0.70 8.04 -2.39 -0.02 0.68 16 40 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.09 0.67 8.13 -2.39 -0.02 0.65 16 43 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.06 0.85 6.90 -2.39 -0.02 0.84 16 46 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.11 1.23 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -77.53 405.65 -1.82 -79.35 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -0.61 Total: 20.93 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 4.92 Total: -14.59 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -5.24 Total: -86.13 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -1.77 Total: -35.56 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -77.53 -1.82 -79.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317071226.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.697 kcal (2) G-P(sol) polarization free energy of solvation -77.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds