Wall clock time and date at job start Sat Apr 11 2020 06:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.29019 * 126.43570 * 2 1 4 4 N 1.28739 * 108.80958 * 179.97438 * 3 2 1 5 5 N 1.28842 * 109.39613 * 359.76467 * 4 3 2 6 6 C 1.31080 * 107.98779 * 0.37920 * 5 4 3 7 7 C 1.50698 * 126.65696 * 179.89497 * 6 5 4 8 8 N 1.46898 * 109.47330 * 269.68388 * 7 6 5 9 9 C 1.46904 * 111.00289 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47066 * 180.02562 * 9 8 7 11 11 H 1.08999 * 110.88673 * 51.11730 * 10 9 8 12 12 C 1.55152 * 111.00506 * 175.00188 * 10 9 8 13 13 C 1.54323 * 102.94507 * 153.57338 * 12 10 9 14 14 N 1.47019 * 107.27046 * 337.80871 * 13 12 10 15 15 C 1.34775 * 125.64724 * 178.90656 * 14 13 12 16 16 O 1.21284 * 120.00295 * 180.02562 * 15 14 13 17 17 C 1.50708 * 119.99957 * 0.02562 * 15 14 13 18 18 S 1.80998 * 109.47052 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00013 * 180.02562 * 18 17 15 20 20 H 1.07991 * 119.99794 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99771 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00311 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99653 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47055 * 180.02562 * 23 21 19 25 25 H 1.48508 * 109.47016 * 299.99635 * 23 21 19 26 26 H 1.48495 * 109.47483 * 59.99992 * 23 21 19 27 27 C 1.47419 * 108.70475 * 359.16380 * 14 13 12 28 28 H 1.08997 * 109.47163 * 270.02595 * 1 2 3 29 29 H 1.09006 * 109.47131 * 30.02400 * 1 2 3 30 30 H 1.08999 * 109.47156 * 150.02390 * 1 2 3 31 31 H 1.09003 * 109.47130 * 149.68633 * 7 6 5 32 32 H 1.09000 * 109.47480 * 29.68554 * 7 6 5 33 33 H 1.00901 * 110.99952 * 303.96190 * 8 7 6 34 34 H 1.08998 * 109.46994 * 60.00211 * 9 8 7 35 35 H 1.08996 * 109.46782 * 299.99832 * 9 8 7 36 36 H 1.09001 * 110.71860 * 35.21044 * 12 10 9 37 37 H 1.08999 * 110.71932 * 271.93917 * 12 10 9 38 38 H 1.08999 * 109.88038 * 218.38538 * 13 12 10 39 39 H 1.09008 * 110.00757 * 97.29760 * 13 12 10 40 40 H 1.09005 * 109.46512 * 60.00633 * 17 15 14 41 41 H 1.08991 * 109.47135 * 300.00153 * 17 15 14 42 42 H 0.97001 * 119.99662 * 359.97438 * 22 21 19 43 43 H 1.08999 * 110.36921 * 142.73978 * 27 14 13 44 44 H 1.08996 * 110.36854 * 265.06399 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2313 1.0380 0.0000 4 7 3.4582 0.6482 0.0005 5 7 3.4980 -0.6396 0.0059 6 6 2.2644 -1.0828 0.0006 7 6 1.8264 -2.5247 0.0016 8 7 1.6838 -2.9941 -1.3830 9 6 1.2564 -4.3991 -1.4213 10 6 1.1198 -4.8512 -2.8765 11 1 2.0206 -4.6151 -3.4430 12 6 0.7911 -6.3652 -2.9600 13 6 0.0445 -6.4831 -4.3055 14 7 -0.4893 -5.1515 -4.6267 15 6 -1.1880 -4.8314 -5.7339 16 8 -1.5808 -3.6954 -5.8959 17 6 -1.4812 -5.8851 -6.7707 18 16 -2.4278 -5.1500 -8.1270 19 6 -2.6258 -6.5619 -9.1624 20 1 -2.2087 -7.5125 -8.8647 21 6 -3.3178 -6.4522 -10.3606 22 7 -3.8257 -5.2934 -10.7236 23 14 -3.5282 -7.9493 -11.4578 24 1 -4.2984 -7.5704 -12.6697 25 1 -2.1930 -8.4598 -11.8602 26 1 -4.2600 -9.0075 -10.7165 27 6 -0.1284 -4.2228 -3.5401 28 1 -0.3633 0.0005 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 0.8693 -2.6133 0.5156 32 1 2.5724 -3.1307 0.5157 33 1 1.0453 -2.4080 -1.8996 34 1 0.2952 -4.5003 -0.9173 35 1 1.9981 -5.0183 -0.9169 36 1 0.1468 -6.6661 -2.1339 37 1 1.7055 -6.9582 -2.9731 38 1 -0.7731 -7.1982 -4.2143 39 1 0.7328 -6.8050 -5.0870 40 1 -2.0604 -6.6896 -6.3172 41 1 -0.5440 -6.2852 -7.1572 42 1 -3.7167 -4.5162 -10.1536 43 1 0.1112 -3.2397 -3.9453 44 1 -0.9420 -4.1486 -2.8186 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317317667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:41 Heat of formation + Delta-G solvation = 53.050749 kcal Electronic energy + Delta-G solvation = -26109.997519 eV Core-core repulsion = 22225.007898 eV Total energy + Delta-G solvation = -3884.989621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.25870 -41.16196 -39.03727 -37.39563 -36.54095 -34.76802 -34.25340 -32.82329 -30.97653 -30.31746 -29.38554 -27.64360 -27.05786 -25.50256 -24.55680 -23.60360 -22.82971 -21.34447 -20.88058 -20.11203 -18.44796 -18.35708 -18.19347 -17.94048 -17.10075 -16.87946 -16.18049 -15.91305 -15.81526 -15.66957 -15.43979 -14.93578 -14.66287 -14.62633 -14.61483 -14.37525 -14.07902 -13.93263 -13.70235 -13.53361 -13.30981 -13.19284 -13.16683 -12.79519 -12.74477 -12.29798 -12.11681 -11.96067 -11.88643 -11.83916 -11.59730 -11.56604 -11.22548 -11.10990 -11.08764 -10.35634 -9.76125 -9.53173 -8.94334 -8.90685 -6.30250 0.12681 1.04852 1.09851 1.13474 1.43998 1.51058 1.60100 1.80282 2.00474 2.32754 2.79532 3.00653 3.06659 3.16371 3.22065 3.44679 3.60428 3.79295 3.84137 3.93427 4.08639 4.17450 4.20136 4.27084 4.29001 4.33182 4.40310 4.44214 4.48080 4.56425 4.61527 4.70951 4.74761 4.82905 4.92439 4.98098 5.10084 5.16576 5.29378 5.40686 5.62077 5.83997 6.12746 6.16134 6.29793 6.99921 7.04540 7.48444 8.49020 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021486 B = 0.001843 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.876561 B =15186.534032 C =16062.940561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.297 5.297 3 N -0.112 5.112 4 N -0.116 5.116 5 N -0.323 5.323 6 C 0.191 3.809 7 C 0.147 3.853 8 N -0.702 5.702 9 C 0.082 3.918 10 C -0.090 4.090 11 H 0.082 0.918 12 C -0.108 4.108 13 C 0.085 3.915 14 N -0.616 5.616 15 C 0.543 3.457 16 O -0.569 6.569 17 C -0.100 4.100 18 S -0.197 6.197 19 C -0.613 4.613 20 H 0.076 0.924 21 C -0.020 4.020 22 N -0.912 5.912 23 Si 1.137 2.863 24 H -0.280 1.280 25 H -0.263 1.263 26 H -0.261 1.261 27 C 0.103 3.897 28 H 0.127 0.873 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.101 0.899 32 H 0.125 0.875 33 H 0.342 0.658 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.260 0.740 43 H 0.054 0.946 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.788 -2.952 29.409 30.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.100 5.100 3 N -0.099 5.099 4 N -0.109 5.109 5 N -0.173 5.173 6 C -0.088 4.088 7 C 0.016 3.984 8 N -0.335 5.335 9 C -0.046 4.046 10 C -0.110 4.110 11 H 0.100 0.900 12 C -0.146 4.146 13 C -0.037 4.037 14 N -0.350 5.350 15 C 0.331 3.669 16 O -0.448 6.448 17 C -0.251 4.251 18 S 0.030 5.970 19 C -0.760 4.760 20 H 0.094 0.906 21 C -0.223 4.223 22 N -0.548 5.548 23 Si 0.954 3.046 24 H -0.206 1.206 25 H -0.188 1.188 26 H -0.186 1.186 27 C -0.019 4.019 28 H 0.145 0.855 29 H 0.132 0.868 30 H 0.146 0.854 31 H 0.118 0.882 32 H 0.143 0.857 33 H 0.160 0.840 34 H 0.083 0.917 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.163 -0.885 27.669 29.160 hybrid contribution -0.613 -0.484 1.250 1.474 sum 8.549 -1.369 28.919 30.188 Atomic orbital electron populations 1.22971 0.68507 1.08317 1.07981 1.48818 1.12193 1.03460 1.45565 1.78812 0.98046 1.14172 1.18842 1.78629 1.10775 1.04764 1.16778 1.74930 1.20107 1.03150 1.19088 1.26545 0.85977 0.95303 1.00933 1.20569 1.03703 0.82401 0.91723 1.60330 1.56327 1.04864 1.12013 1.21934 1.01251 0.87263 0.94189 1.22312 0.96291 0.95607 0.96794 0.89986 1.22663 1.01727 0.95018 0.95212 1.22427 0.98758 0.83175 0.99311 1.48425 1.53772 1.13325 1.19485 1.19696 0.77409 0.88161 0.81643 1.90683 1.53321 1.23021 1.77754 1.23154 1.04165 1.00768 0.97062 1.85055 1.71192 1.19871 1.20880 1.24015 1.45209 0.96552 1.10267 0.90627 1.27871 0.91548 1.05008 0.97852 1.70924 1.42892 1.01246 1.39698 0.82722 0.77919 0.70052 0.73909 1.20554 1.18803 1.18588 1.22475 0.97789 0.93239 0.88392 0.85503 0.86752 0.85422 0.88156 0.85658 0.84012 0.91727 0.87784 0.87944 0.87425 0.90236 0.91106 0.87296 0.87687 0.92904 0.92695 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.10 11.09 127.77 1.42 1.52 16 2 N -0.30 -3.90 3.75 -359.64 -1.35 -5.25 16 3 N -0.11 -2.46 13.29 37.02 0.49 -1.97 16 4 N -0.12 -3.11 13.43 37.01 0.50 -2.62 16 5 N -0.32 -7.61 12.36 -50.45 -0.62 -8.23 16 6 C 0.19 2.72 7.65 138.13 1.06 3.78 16 7 C 0.15 0.72 5.82 85.56 0.50 1.22 16 8 N -0.70 -5.25 6.49 -517.94 -3.36 -8.61 16 9 C 0.08 0.30 5.19 86.30 0.45 0.74 16 10 C -0.09 -0.86 3.24 -9.48 -0.03 -0.89 16 11 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 12 C -0.11 -0.74 6.42 31.78 0.20 -0.54 16 13 C 0.09 1.32 6.49 86.73 0.56 1.89 16 14 N -0.62 -15.23 3.33 -812.22 -2.70 -17.93 16 15 C 0.54 20.18 7.87 87.66 0.69 20.87 16 16 O -0.57 -26.31 16.12 -3.04 -0.05 -26.35 16 17 C -0.10 -4.01 5.35 71.24 0.38 -3.63 16 18 S -0.20 -10.88 19.60 -56.49 -1.11 -11.98 16 19 C -0.61 -35.24 9.50 67.95 0.65 -34.59 16 20 H 0.08 4.06 7.80 -2.92 -0.02 4.03 16 21 C -0.02 -1.14 5.49 84.86 0.47 -0.67 16 22 N -0.91 -57.94 13.67 21.65 0.30 -57.65 16 23 Si 1.14 48.78 29.92 68.60 2.05 50.84 16 24 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 26 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 27 C 0.10 1.81 5.84 86.78 0.51 2.32 16 28 H 0.13 -0.41 8.14 -2.39 -0.02 -0.43 16 29 H 0.11 0.19 8.14 -2.38 -0.02 0.18 16 30 H 0.13 -0.43 7.75 -2.39 -0.02 -0.44 16 31 H 0.10 -0.27 7.81 -2.39 -0.02 -0.28 16 32 H 0.13 0.48 8.14 -2.39 -0.02 0.47 16 33 H 0.34 2.83 8.22 -89.69 -0.74 2.10 16 34 H 0.06 -0.01 7.96 -2.39 -0.02 -0.03 16 35 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 36 H 0.10 0.30 8.04 -2.39 -0.02 0.29 16 37 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 41 H 0.10 3.89 8.14 -2.40 -0.02 3.87 16 42 H 0.26 17.19 7.12 -92.71 -0.66 16.53 16 43 H 0.05 1.23 8.04 -2.39 -0.02 1.21 16 44 H 0.08 1.14 7.90 -2.39 -0.02 1.12 16 Total: -1.00 -93.21 385.28 1.38 -91.82 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 0.39 Total: 5.93 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 6.85 Total: -8.00 kcal Atomic # 7 Polarization: -95.50 SS G_CDS: -6.75 Total: -102.26 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.05 Total: -26.35 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 2.05 Total: 50.84 kcal Atomic # 16 Polarization: -10.88 SS G_CDS: -1.11 Total: -11.98 kcal Total: -93.21 1.38 -91.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317317667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.874 kcal (2) G-P(sol) polarization free energy of solvation -93.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds