Wall clock time and date at job start Sat Apr 11 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28438 * 125.18637 * 2 1 4 4 C 1.30838 * 110.98213 * 179.97438 * 3 2 1 5 5 C 1.39801 * 107.87562 * 359.97438 * 4 3 2 6 6 Cl 1.73606 * 127.33496 * 179.97438 * 5 4 3 7 7 C 1.36752 * 125.18984 * 180.26156 * 2 1 3 8 8 C 1.47026 * 126.90596 * 0.02762 * 7 2 1 9 9 O 1.21636 * 120.00357 * 262.07539 * 8 7 2 10 10 N 1.34776 * 119.99720 * 82.06812 * 8 7 2 11 11 C 1.46497 * 119.99991 * 185.00305 * 10 8 7 12 12 C 1.53010 * 109.47294 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46878 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.46670 * 181.42190 * 13 12 11 15 15 H 1.09003 * 109.87652 * 55.53964 * 14 13 12 16 16 C 1.54318 * 109.88323 * 294.52089 * 14 13 12 17 17 C 1.55151 * 102.94482 * 218.39099 * 16 14 13 18 18 C 1.54907 * 101.58246 * 35.49896 * 17 16 14 19 19 N 1.47023 * 109.88209 * 176.55389 * 14 13 12 20 20 C 1.36934 * 125.64770 * 298.31170 * 19 14 13 21 21 H 1.08009 * 120.00077 * 347.16750 * 20 19 14 22 22 C 1.38813 * 119.99911 * 167.16422 * 20 19 14 23 23 N 1.31620 * 119.99802 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99828 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47511 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47144 * 120.00095 * 24 22 20 27 27 H 1.48499 * 109.47030 * 239.99609 * 24 22 20 28 28 H 1.09001 * 109.46764 * 87.61323 * 1 2 3 29 29 H 1.09007 * 109.46984 * 207.61169 * 1 2 3 30 30 H 1.09003 * 109.47322 * 327.61042 * 1 2 3 31 31 H 1.07998 * 126.06033 * 180.02562 * 4 3 2 32 32 H 0.97004 * 120.00020 * 5.01360 * 10 8 7 33 33 H 1.08999 * 109.47398 * 300.00640 * 11 10 8 34 34 H 1.09005 * 109.46994 * 60.00748 * 11 10 8 35 35 H 1.09006 * 109.46876 * 300.00129 * 12 11 10 36 36 H 1.08996 * 109.46845 * 60.00022 * 12 11 10 37 37 H 1.09001 * 109.46838 * 301.41886 * 13 12 11 38 38 H 1.08999 * 109.47615 * 61.42622 * 13 12 11 39 39 H 1.09002 * 110.72261 * 336.75459 * 16 14 13 40 40 H 1.09002 * 110.71814 * 100.02888 * 16 14 13 41 41 H 1.08998 * 111.00703 * 153.57796 * 17 16 14 42 42 H 1.09005 * 111.00392 * 277.38696 * 17 16 14 43 43 H 1.08997 * 110.36251 * 81.83040 * 18 17 16 44 44 H 1.08999 * 110.37084 * 204.14829 * 18 17 16 45 45 H 0.97003 * 119.99502 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2051 1.0497 0.0000 4 6 3.4735 0.7287 0.0005 5 6 3.5630 -0.6665 0.0015 6 17 5.0079 -1.6288 0.0020 7 6 2.2531 -1.1176 -0.0051 8 6 1.8011 -2.5166 -0.0121 9 8 1.7519 -3.1451 1.0282 10 7 1.4411 -3.1027 -1.1711 11 6 0.8874 -4.4590 -1.1651 12 6 0.5651 -4.8847 -2.5990 13 6 -0.0137 -6.3010 -2.5925 14 6 -0.3030 -6.7402 -4.0293 15 1 0.6013 -6.6551 -4.6320 16 6 -1.4198 -5.8620 -4.6319 17 6 -2.2449 -6.8748 -5.4688 18 6 -2.1520 -8.1498 -4.5941 19 7 -0.7824 -8.1300 -4.0405 20 6 -0.0762 -9.2212 -3.6096 21 1 0.9832 -9.1371 -3.4165 22 6 -0.7218 -10.4355 -3.4210 23 7 -2.0127 -10.5381 -3.6568 24 14 0.2414 -11.9240 -2.8326 25 1 1.6652 -11.5482 -2.6411 26 1 -0.3220 -12.4003 -1.5438 27 1 0.1465 -13.0067 -3.8445 28 1 -0.3633 0.0428 -1.0268 29 1 -0.3633 -0.9107 0.4763 30 1 -0.3634 0.8678 0.5505 31 1 4.3040 1.4190 0.0011 32 1 1.5488 -2.6265 -2.0093 33 1 1.6164 -5.1472 -0.7373 34 1 -0.0237 -4.4768 -0.5670 35 1 -0.1638 -4.1966 -3.0272 36 1 1.4764 -4.8670 -3.1967 37 1 0.7049 -6.9851 -2.1412 38 1 -0.9386 -6.3129 -2.0159 39 1 -2.0323 -5.4229 -3.8444 40 1 -0.9979 -5.0865 -5.2713 41 1 -3.2790 -6.5459 -5.5716 42 1 -1.7897 -7.0366 -6.4460 43 1 -2.8877 -8.1131 -3.7907 44 1 -2.3001 -9.0405 -5.2047 45 1 -2.4639 -11.3866 -3.5247 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317423067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:43 Heat of formation + Delta-G solvation = 53.326356 kcal Electronic energy + Delta-G solvation = -26713.778929 eV Core-core repulsion = 22794.464801 eV Total energy + Delta-G solvation = -3919.314128 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.02799 -39.72471 -37.87345 -36.92886 -35.69034 -33.86085 -33.09488 -32.27581 -31.18246 -29.41773 -28.16196 -27.59989 -25.12973 -24.36179 -22.98316 -22.18097 -21.65038 -20.46041 -20.13067 -19.19715 -18.50409 -17.01407 -16.78075 -16.40501 -16.01140 -15.90562 -15.22047 -15.03233 -14.73045 -14.30150 -14.26529 -13.80653 -13.73826 -13.61635 -13.25026 -12.90475 -12.41573 -12.25074 -12.11037 -12.03976 -11.94966 -11.77842 -11.51689 -11.06691 -10.91048 -10.84988 -10.81249 -10.62906 -10.47435 -10.06181 -10.01837 -9.80208 -9.74285 -9.62933 -9.62507 -9.37136 -9.17198 -8.58800 -6.78633 -5.73651 -3.08518 1.02380 1.36828 1.94265 2.04375 2.40862 2.83090 3.39173 3.45692 3.47448 4.02501 4.15402 4.48956 4.53853 4.56092 4.84624 4.87165 4.87858 4.95806 5.08323 5.30272 5.42814 5.55192 5.56840 5.66982 5.70746 5.79369 5.86286 5.93625 6.03198 6.09132 6.16067 6.26093 6.31642 6.38833 6.54313 6.66295 6.69882 6.92272 7.06670 7.14996 7.43249 7.55501 7.62118 7.72850 7.81130 8.29477 9.20682 9.82561 10.51352 11.38412 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015611 B = 0.002235 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.229896 B =12526.944963 C =13564.379995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.265 5.265 3 N -0.271 5.271 4 C 0.024 3.976 5 C -0.115 4.115 6 Cl -0.016 7.016 7 C -0.011 4.011 8 C 0.587 3.413 9 O -0.509 6.509 10 N -0.711 5.711 11 C 0.116 3.884 12 C -0.128 4.128 13 C -0.122 4.122 14 C 0.162 3.838 15 H 0.031 0.969 16 C -0.124 4.124 17 C -0.150 4.150 18 C 0.171 3.829 19 N -0.597 5.597 20 C -0.224 4.224 21 H 0.075 0.925 22 C -0.007 4.007 23 N -0.919 5.919 24 Si 0.908 3.092 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.291 1.291 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.196 0.804 32 H 0.403 0.597 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.022 0.978 44 H 0.073 0.927 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.908 24.036 3.494 24.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.053 5.053 3 N -0.101 5.101 4 C -0.154 4.154 5 C -0.153 4.153 6 Cl 0.012 6.988 7 C -0.142 4.142 8 C 0.368 3.632 9 O -0.382 6.382 10 N -0.363 5.363 11 C -0.006 4.006 12 C -0.166 4.166 13 C -0.162 4.162 14 C 0.055 3.945 15 H 0.049 0.951 16 C -0.162 4.162 17 C -0.189 4.189 18 C 0.046 3.954 19 N -0.321 5.321 20 C -0.353 4.353 21 H 0.093 0.907 22 C -0.203 4.203 23 N -0.566 5.566 24 Si 0.739 3.261 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.218 1.218 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.213 0.787 32 H 0.238 0.762 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.040 0.960 44 H 0.091 0.909 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.006 24.126 4.305 25.014 hybrid contribution 1.191 -1.301 0.032 1.764 sum 6.197 22.825 4.337 24.046 Atomic orbital electron populations 1.22333 0.71938 1.06061 1.05182 1.45523 1.07764 1.01414 1.50637 1.73263 1.03330 1.13213 1.20320 1.23543 0.93922 0.92652 1.05272 1.21281 0.87417 0.92621 1.13971 1.98375 1.32961 1.70224 1.97215 1.21303 0.90925 0.89758 1.12174 1.16851 0.77917 0.83810 0.84601 1.90903 1.51527 1.63832 1.31979 1.46097 1.63629 1.18127 1.08435 1.21663 0.98957 0.80947 0.99031 1.21856 1.01449 0.99227 0.94078 1.22037 1.00866 0.92796 1.00513 1.20910 0.94847 0.86104 0.92686 0.95148 1.22587 0.97734 0.97120 0.98758 1.23008 0.98253 0.98640 0.98994 1.21493 0.86144 0.93785 0.93971 1.44625 1.14258 1.00164 1.73035 1.19017 0.91481 0.87254 1.37545 0.90691 1.24871 0.95724 0.98295 1.01434 1.69945 1.07838 1.24538 1.54275 0.86101 0.78968 0.82897 0.78160 1.20434 1.21733 1.21801 0.88872 0.88451 0.87701 0.78691 0.76220 0.90713 0.91004 0.91591 0.91528 0.91580 0.92151 0.92093 0.92672 0.92579 0.92481 0.95975 0.90908 0.93803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.45 11.19 59.85 0.67 1.12 16 2 N -0.27 -2.41 3.75 -63.85 -0.24 -2.65 16 3 N -0.27 -2.61 11.89 30.61 0.36 -2.25 16 4 C 0.02 0.21 12.04 -17.39 -0.21 0.00 16 5 C -0.11 -1.20 6.89 -38.88 -0.27 -1.47 16 6 Cl -0.02 -0.17 29.24 -51.86 -1.52 -1.69 16 7 C -0.01 -0.12 6.72 -82.00 -0.55 -0.67 16 8 C 0.59 7.11 6.96 -12.70 -0.09 7.02 16 9 O -0.51 -8.16 17.12 5.25 0.09 -8.07 16 10 N -0.71 -7.12 5.55 -61.51 -0.34 -7.46 16 11 C 0.12 1.35 5.68 -4.04 -0.02 1.33 16 12 C -0.13 -1.50 5.14 -26.73 -0.14 -1.64 16 13 C -0.12 -2.02 4.70 -26.73 -0.13 -2.15 16 14 C 0.16 3.10 3.18 -66.95 -0.21 2.88 16 15 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 16 C -0.12 -2.00 5.55 -24.90 -0.14 -2.14 16 17 C -0.15 -2.74 7.08 -24.59 -0.17 -2.91 16 18 C 0.17 4.05 5.46 -2.36 -0.01 4.04 16 19 N -0.60 -14.62 3.14 -162.32 -0.51 -15.13 16 20 C -0.22 -6.08 9.75 -15.06 -0.15 -6.22 16 21 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 22 C -0.01 -0.19 5.47 -17.43 -0.10 -0.28 16 23 N -0.92 -26.68 10.53 55.49 0.58 -26.09 16 24 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.10 0.52 7.73 -51.93 -0.40 0.12 16 30 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.20 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.40 3.09 8.46 -40.82 -0.35 2.75 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.68 7.46 -51.93 -0.39 0.29 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.23 7.89 -51.93 -0.41 0.82 16 38 H 0.06 1.07 8.06 -51.93 -0.42 0.65 16 39 H 0.06 0.93 7.79 -51.93 -0.40 0.52 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.02 0.57 8.11 -51.93 -0.42 0.15 16 44 H 0.07 1.94 6.81 -51.93 -0.35 1.59 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 387.66 15.07 5.84 5.84 Total: -1.00 -33.29 387.66 -9.18 -42.47 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.91 Total: -0.83 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -1.51 Total: -1.08 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.14 Total: -53.58 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.09 Total: -8.07 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.52 Total: -1.69 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.29 -9.18 -42.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317423067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.798 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds