Wall clock time and date at job start Sat Apr 11 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28438 * 125.18637 * 2 1 4 4 C 1.30838 * 110.98213 * 179.97438 * 3 2 1 5 5 C 1.39801 * 107.87562 * 359.97438 * 4 3 2 6 6 Cl 1.73606 * 127.33496 * 179.97438 * 5 4 3 7 7 C 1.36752 * 125.18984 * 180.26156 * 2 1 3 8 8 C 1.47026 * 126.90596 * 0.02762 * 7 2 1 9 9 O 1.21636 * 120.00357 * 262.07539 * 8 7 2 10 10 N 1.34776 * 119.99720 * 82.06812 * 8 7 2 11 11 C 1.46497 * 119.99991 * 185.00305 * 10 8 7 12 12 C 1.53010 * 109.47294 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46878 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.46670 * 181.42190 * 13 12 11 15 15 H 1.09003 * 109.87652 * 55.53964 * 14 13 12 16 16 C 1.54318 * 109.88323 * 294.52089 * 14 13 12 17 17 C 1.55151 * 102.94482 * 218.39099 * 16 14 13 18 18 C 1.54907 * 101.58246 * 35.49896 * 17 16 14 19 19 N 1.47023 * 109.88209 * 176.55389 * 14 13 12 20 20 C 1.36934 * 125.64770 * 298.31170 * 19 14 13 21 21 H 1.08009 * 120.00077 * 347.16750 * 20 19 14 22 22 C 1.38813 * 119.99911 * 167.16422 * 20 19 14 23 23 N 1.31620 * 119.99802 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99828 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47511 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47144 * 120.00095 * 24 22 20 27 27 H 1.48499 * 109.47030 * 239.99609 * 24 22 20 28 28 H 1.09001 * 109.46764 * 87.61323 * 1 2 3 29 29 H 1.09007 * 109.46984 * 207.61169 * 1 2 3 30 30 H 1.09003 * 109.47322 * 327.61042 * 1 2 3 31 31 H 1.07998 * 126.06033 * 180.02562 * 4 3 2 32 32 H 0.97004 * 120.00020 * 5.01360 * 10 8 7 33 33 H 1.08999 * 109.47398 * 300.00640 * 11 10 8 34 34 H 1.09005 * 109.46994 * 60.00748 * 11 10 8 35 35 H 1.09006 * 109.46876 * 300.00129 * 12 11 10 36 36 H 1.08996 * 109.46845 * 60.00022 * 12 11 10 37 37 H 1.09001 * 109.46838 * 301.41886 * 13 12 11 38 38 H 1.08999 * 109.47615 * 61.42622 * 13 12 11 39 39 H 1.09002 * 110.72261 * 336.75459 * 16 14 13 40 40 H 1.09002 * 110.71814 * 100.02888 * 16 14 13 41 41 H 1.08998 * 111.00703 * 153.57796 * 17 16 14 42 42 H 1.09005 * 111.00392 * 277.38696 * 17 16 14 43 43 H 1.08997 * 110.36251 * 81.83040 * 18 17 16 44 44 H 1.08999 * 110.37084 * 204.14829 * 18 17 16 45 45 H 0.97003 * 119.99502 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2051 1.0497 0.0000 4 6 3.4735 0.7287 0.0005 5 6 3.5630 -0.6665 0.0015 6 17 5.0079 -1.6288 0.0020 7 6 2.2531 -1.1176 -0.0051 8 6 1.8011 -2.5166 -0.0121 9 8 1.7519 -3.1451 1.0282 10 7 1.4411 -3.1027 -1.1711 11 6 0.8874 -4.4590 -1.1651 12 6 0.5651 -4.8847 -2.5990 13 6 -0.0137 -6.3010 -2.5925 14 6 -0.3030 -6.7402 -4.0293 15 1 0.6013 -6.6551 -4.6320 16 6 -1.4198 -5.8620 -4.6319 17 6 -2.2449 -6.8748 -5.4688 18 6 -2.1520 -8.1498 -4.5941 19 7 -0.7824 -8.1300 -4.0405 20 6 -0.0762 -9.2212 -3.6096 21 1 0.9832 -9.1371 -3.4165 22 6 -0.7218 -10.4355 -3.4210 23 7 -2.0127 -10.5381 -3.6568 24 14 0.2414 -11.9240 -2.8326 25 1 1.6652 -11.5482 -2.6411 26 1 -0.3220 -12.4003 -1.5438 27 1 0.1465 -13.0067 -3.8445 28 1 -0.3633 0.0428 -1.0268 29 1 -0.3633 -0.9107 0.4763 30 1 -0.3634 0.8678 0.5505 31 1 4.3040 1.4190 0.0011 32 1 1.5488 -2.6265 -2.0093 33 1 1.6164 -5.1472 -0.7373 34 1 -0.0237 -4.4768 -0.5670 35 1 -0.1638 -4.1966 -3.0272 36 1 1.4764 -4.8670 -3.1967 37 1 0.7049 -6.9851 -2.1412 38 1 -0.9386 -6.3129 -2.0159 39 1 -2.0323 -5.4229 -3.8444 40 1 -0.9979 -5.0865 -5.2713 41 1 -3.2790 -6.5459 -5.5716 42 1 -1.7897 -7.0366 -6.4460 43 1 -2.8877 -8.1131 -3.7907 44 1 -2.3001 -9.0405 -5.2047 45 1 -2.4639 -11.3866 -3.5247 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317423067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:43 Heat of formation + Delta-G solvation = 31.578555 kcal Electronic energy + Delta-G solvation = -26714.721984 eV Core-core repulsion = 22794.464801 eV Total energy + Delta-G solvation = -3920.257183 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.72668 -40.70427 -39.43899 -37.69957 -36.80471 -34.73833 -34.43685 -33.75604 -32.05210 -31.21513 -29.47720 -28.15665 -26.68750 -25.94493 -24.01643 -22.89086 -22.72338 -21.85576 -21.31339 -20.67787 -19.31009 -18.68367 -17.79057 -17.18894 -16.97545 -16.88952 -16.80527 -16.13038 -15.90002 -15.74686 -15.35779 -15.17034 -14.69088 -14.26714 -14.11758 -13.89498 -13.69225 -13.66803 -13.57412 -13.14859 -13.00602 -12.94769 -12.82123 -12.77030 -12.66699 -12.25270 -11.95869 -11.85824 -11.72746 -11.65384 -11.55691 -11.41951 -11.28302 -11.11434 -10.65878 -10.43747 -10.32200 -9.90211 -8.77385 -7.84074 -5.19011 0.26440 0.65407 1.09142 1.35470 1.44371 1.45508 1.55037 1.62037 2.03844 2.50274 3.32662 3.35952 3.45694 3.70040 3.89192 3.93395 4.01963 4.17331 4.22136 4.24847 4.27173 4.33552 4.36448 4.43309 4.53876 4.63312 4.76243 4.82562 4.85166 4.99654 5.05213 5.06588 5.13316 5.19414 5.26697 5.36533 5.47578 5.52461 5.54058 5.70208 5.72958 5.81997 6.22233 6.29151 6.74658 6.85993 7.13941 7.83952 8.50828 9.27219 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015611 B = 0.002235 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.229896 B =12526.944963 C =13564.379995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.260 5.260 3 N -0.278 5.278 4 C 0.026 3.974 5 C -0.127 4.127 6 Cl -0.022 7.022 7 C -0.026 4.026 8 C 0.593 3.407 9 O -0.555 6.555 10 N -0.693 5.693 11 C 0.123 3.877 12 C -0.109 4.109 13 C -0.112 4.112 14 C 0.151 3.849 15 H 0.033 0.967 16 C -0.110 4.110 17 C -0.138 4.138 18 C 0.172 3.828 19 N -0.620 5.620 20 C -0.226 4.226 21 H 0.076 0.924 22 C -0.067 4.067 23 N -0.950 5.950 24 Si 0.968 3.032 25 H -0.267 1.267 26 H -0.295 1.295 27 H -0.293 1.293 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.223 0.777 32 H 0.419 0.581 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.036 0.964 38 H 0.045 0.955 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.061 0.939 43 H -0.009 1.009 44 H 0.032 0.968 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.496 27.081 2.610 27.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.048 5.048 3 N -0.109 5.109 4 C -0.151 4.151 5 C -0.165 4.165 6 Cl 0.006 6.994 7 C -0.157 4.157 8 C 0.376 3.624 9 O -0.432 6.432 10 N -0.345 5.345 11 C 0.000 4.000 12 C -0.147 4.147 13 C -0.152 4.152 14 C 0.045 3.955 15 H 0.051 0.949 16 C -0.148 4.148 17 C -0.176 4.176 18 C 0.047 3.953 19 N -0.344 5.344 20 C -0.356 4.356 21 H 0.094 0.906 22 C -0.260 4.260 23 N -0.599 5.599 24 Si 0.798 3.202 25 H -0.191 1.191 26 H -0.222 1.222 27 H -0.220 1.220 28 H 0.135 0.865 29 H 0.113 0.887 30 H 0.139 0.861 31 H 0.240 0.760 32 H 0.256 0.744 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.009 0.991 44 H 0.050 0.950 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.611 27.232 3.381 28.009 hybrid contribution 1.010 -2.199 0.288 2.437 sum 6.620 25.033 3.669 26.152 Atomic orbital electron populations 1.22676 0.70049 1.06715 1.07016 1.45860 1.08800 1.00631 1.49558 1.73279 1.03732 1.13311 1.20585 1.23999 0.94461 0.92385 1.04226 1.21478 0.87166 0.93339 1.14554 1.98370 1.33265 1.70486 1.97263 1.21125 0.91515 0.89469 1.13570 1.16981 0.77043 0.84198 0.84213 1.90883 1.53658 1.65028 1.33615 1.45876 1.62519 1.17365 1.08732 1.21446 0.98318 0.81339 0.98868 1.21651 1.02453 0.96317 0.94291 1.21815 0.99711 0.95376 0.98333 1.21219 0.96078 0.84022 0.94226 0.94877 1.22587 0.96270 0.96779 0.99142 1.22877 1.00456 0.96079 0.98210 1.21298 0.85433 0.95237 0.93344 1.44935 1.14381 1.02057 1.73049 1.19329 0.91849 0.88386 1.36017 0.90601 1.25619 0.96670 1.01009 1.02686 1.70153 1.09208 1.24569 1.56011 0.85148 0.78315 0.79686 0.77091 1.19107 1.22237 1.22002 0.86507 0.88698 0.86140 0.76026 0.74404 0.92741 0.91346 0.88682 0.90271 0.94474 0.93602 0.90707 0.88537 0.90075 0.91993 0.99053 0.95000 0.94581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 11.19 127.77 1.43 2.04 16 2 N -0.26 -4.17 3.75 -355.91 -1.34 -5.51 16 3 N -0.28 -4.72 11.89 -57.07 -0.68 -5.40 16 4 C 0.03 0.41 12.04 85.22 1.03 1.44 16 5 C -0.13 -2.47 6.89 22.72 0.16 -2.31 16 6 Cl -0.02 -0.44 29.24 -2.72 -0.08 -0.52 16 7 C -0.03 -0.51 6.72 40.76 0.27 -0.24 16 8 C 0.59 13.72 6.96 86.55 0.60 14.32 16 9 O -0.56 -17.80 17.12 -4.15 -0.07 -17.87 16 10 N -0.69 -12.43 5.55 -466.75 -2.59 -15.02 16 11 C 0.12 2.68 5.68 86.38 0.49 3.17 16 12 C -0.11 -2.23 5.14 30.60 0.16 -2.07 16 13 C -0.11 -3.61 4.70 30.60 0.14 -3.47 16 14 C 0.15 5.50 3.18 45.34 0.14 5.64 16 15 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 16 C -0.11 -3.13 5.55 31.78 0.18 -2.96 16 17 C -0.14 -4.72 7.08 31.98 0.23 -4.49 16 18 C 0.17 8.32 5.46 86.79 0.47 8.80 16 19 N -0.62 -30.70 3.14 -667.46 -2.09 -32.80 16 20 C -0.23 -12.51 9.75 84.03 0.82 -11.69 16 21 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 22 C -0.07 -3.83 5.47 84.86 0.46 -3.36 16 23 N -0.95 -57.50 10.53 21.65 0.23 -57.27 16 24 Si 0.97 46.33 29.55 68.60 2.03 48.36 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 26 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 27 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 28 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.09 0.85 7.73 -2.38 -0.02 0.83 16 30 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.22 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.42 5.06 8.46 -92.71 -0.78 4.27 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.09 1.48 7.46 -2.38 -0.02 1.46 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.04 1.39 7.89 -2.39 -0.02 1.37 16 38 H 0.05 1.59 8.06 -2.39 -0.02 1.58 16 39 H 0.07 1.96 7.79 -2.39 -0.02 1.94 16 40 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 43 H -0.01 -0.46 8.11 -2.39 -0.02 -0.48 16 44 H 0.03 1.77 6.81 -2.39 -0.02 1.75 16 45 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -76.12 387.66 2.21 -73.91 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 0.22 Total: 7.30 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 6.58 Total: 4.82 kcal Atomic # 7 Polarization: -109.52 SS G_CDS: -6.47 Total: -115.99 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.07 Total: -17.87 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.08 Total: -0.52 kcal Total: -76.12 2.21 -73.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317423067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.490 kcal (2) G-P(sol) polarization free energy of solvation -76.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds