Wall clock time and date at job start Sat Apr 11 2020 06:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28433 * 125.18772 * 2 1 4 4 C 1.30829 * 110.98295 * 180.28037 * 3 2 1 5 5 C 1.39810 * 107.87486 * 359.70963 * 4 3 2 6 6 Cl 1.73600 * 127.33365 * 179.97438 * 5 4 3 7 7 C 1.36745 * 125.18785 * 179.78352 * 2 1 3 8 8 C 1.47034 * 126.90397 * 0.02562 * 7 2 1 9 9 O 1.21637 * 120.00069 * 90.55678 * 8 7 2 10 10 N 1.34778 * 119.99570 * 270.83333 * 8 7 2 11 11 C 1.46503 * 119.99714 * 185.46070 * 10 8 7 12 12 C 1.52999 * 109.47048 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47137 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.47165 * 174.97682 * 13 12 11 15 15 H 1.09003 * 109.87122 * 306.12366 * 14 13 12 16 16 C 1.54314 * 109.88356 * 67.30082 * 14 13 12 17 17 C 1.55164 * 102.94170 * 141.60979 * 16 14 13 18 18 C 1.54906 * 101.58075 * 324.49972 * 17 16 14 19 19 N 1.47026 * 109.87890 * 185.11223 * 14 13 12 20 20 C 1.36941 * 125.64805 * 61.60846 * 19 14 13 21 21 H 1.07993 * 120.00092 * 8.00808 * 20 19 14 22 22 C 1.38812 * 119.99402 * 188.00938 * 20 19 14 23 23 N 1.31612 * 120.00360 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99600 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47301 * 59.99870 * 24 22 20 26 26 H 1.48499 * 109.46923 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46915 * 300.00008 * 24 22 20 28 28 H 1.09001 * 109.47248 * 275.13609 * 1 2 3 29 29 H 1.08997 * 109.47512 * 35.13822 * 1 2 3 30 30 H 1.09001 * 109.46819 * 155.13540 * 1 2 3 31 31 H 1.07998 * 126.06324 * 179.71628 * 4 3 2 32 32 H 0.96996 * 120.00310 * 5.45415 * 10 8 7 33 33 H 1.09000 * 109.46726 * 299.99422 * 11 10 8 34 34 H 1.08995 * 109.47500 * 59.99545 * 11 10 8 35 35 H 1.09000 * 109.46833 * 299.99292 * 12 11 10 36 36 H 1.09004 * 109.47242 * 59.99618 * 12 11 10 37 37 H 1.09004 * 109.46702 * 294.97296 * 13 12 11 38 38 H 1.08997 * 109.47118 * 54.97014 * 13 12 11 39 39 H 1.09001 * 110.72616 * 259.97180 * 16 14 13 40 40 H 1.09001 * 110.72588 * 23.25169 * 16 14 13 41 41 H 1.09001 * 111.00637 * 206.42301 * 17 16 14 42 42 H 1.08999 * 111.03354 * 82.58559 * 17 16 14 43 43 H 1.08996 * 110.36893 * 278.17124 * 18 17 16 44 44 H 1.08999 * 110.36682 * 155.84696 * 18 17 16 45 45 H 0.97003 * 120.00365 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2051 1.0496 0.0000 4 6 3.4734 0.7286 -0.0060 5 6 3.5629 -0.6666 -0.0035 6 17 5.0078 -1.6289 -0.0097 7 6 2.2530 -1.1176 0.0042 8 6 1.8009 -2.5167 0.0090 9 8 1.6240 -3.1022 -1.0424 10 7 1.5771 -3.1485 1.1783 11 6 1.2430 -4.5749 1.1878 12 6 1.0395 -5.0413 2.6307 13 6 0.6899 -6.5308 2.6407 14 6 0.6094 -7.0261 4.0861 15 1 1.5310 -6.7804 4.6138 16 6 -0.5958 -6.3759 4.7973 17 6 -1.1453 -7.5307 5.6760 18 6 -0.8918 -8.7599 4.7680 19 7 0.3949 -8.4805 4.1049 20 6 1.2486 -9.4199 3.5911 21 1 2.2265 -9.1260 3.2396 22 6 0.8569 -10.7498 3.5221 23 7 -0.3348 -11.1080 3.9510 24 14 2.0212 -12.0312 2.8206 25 1 3.2657 -12.0652 3.6300 26 1 1.3695 -13.3650 2.8573 27 1 2.3536 -11.6817 1.4160 28 1 -0.3634 0.0920 1.0235 29 1 -0.3634 0.8403 -0.5914 30 1 -0.3633 -0.9324 -0.4321 31 1 4.3039 1.4189 -0.0117 32 1 1.6374 -2.6589 2.0134 33 1 0.3261 -4.7370 0.6212 34 1 2.0558 -5.1415 0.7336 35 1 1.9562 -4.8791 3.1977 36 1 0.2264 -4.4746 3.0845 37 1 -0.2722 -6.6814 2.1509 38 1 1.4601 -7.0883 2.1078 39 1 -0.2727 -5.5397 5.4175 40 1 -1.3435 -6.0535 4.0726 41 1 -2.2100 -7.4014 5.8702 42 1 -0.5872 -7.6123 6.6087 43 1 -1.6867 -8.8556 4.0284 44 1 -0.8200 -9.6668 5.3686 45 1 -0.6084 -12.0374 3.9032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317423069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:46 Heat of formation + Delta-G solvation = 54.446087 kcal Electronic energy + Delta-G solvation = -26698.607980 eV Core-core repulsion = 22779.342407 eV Total energy + Delta-G solvation = -3919.265572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.03065 -39.72828 -37.87692 -36.92839 -35.69746 -33.85292 -33.11488 -32.27332 -31.18172 -29.40996 -28.15406 -27.60291 -25.12661 -24.35708 -22.98098 -22.18376 -21.64223 -20.45373 -20.11533 -19.20634 -18.50024 -17.02077 -16.79477 -16.42587 -16.02600 -15.88194 -15.24769 -15.02989 -14.73002 -14.28119 -14.15258 -13.85637 -13.76169 -13.61615 -13.25683 -12.91660 -12.40160 -12.24934 -12.09191 -12.03754 -11.91630 -11.78293 -11.52084 -11.08341 -10.90748 -10.85036 -10.78481 -10.62013 -10.47853 -10.10732 -10.00808 -9.80022 -9.74409 -9.61534 -9.56691 -9.37062 -9.17165 -8.58738 -6.80866 -5.69389 -3.05802 1.03828 1.36757 1.93549 2.03619 2.38497 2.84294 3.41048 3.45829 3.46447 4.02184 4.15199 4.49811 4.53711 4.55411 4.84329 4.86470 4.89078 4.95246 5.08727 5.31249 5.44375 5.55089 5.57706 5.68317 5.70814 5.80437 5.86419 5.94786 6.03799 6.09646 6.15218 6.27209 6.32556 6.39264 6.55534 6.66929 6.71774 6.92067 7.06398 7.15196 7.43299 7.58767 7.61828 7.72282 7.84595 8.32821 9.22785 9.84516 10.51363 11.39846 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015296 B = 0.002259 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.073246 B =12391.390757 C =13446.571041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.265 5.265 3 N -0.271 5.271 4 C 0.025 3.975 5 C -0.116 4.116 6 Cl -0.016 7.016 7 C -0.011 4.011 8 C 0.587 3.413 9 O -0.512 6.512 10 N -0.709 5.709 11 C 0.117 3.883 12 C -0.127 4.127 13 C -0.122 4.122 14 C 0.163 3.837 15 H 0.031 0.969 16 C -0.124 4.124 17 C -0.150 4.150 18 C 0.166 3.834 19 N -0.597 5.597 20 C -0.224 4.224 21 H 0.075 0.925 22 C -0.008 4.008 23 N -0.921 5.921 24 Si 0.910 3.090 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.196 0.804 32 H 0.403 0.597 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.017 0.983 44 H 0.084 0.916 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.262 24.727 -3.885 25.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.054 5.054 3 N -0.102 5.102 4 C -0.153 4.153 5 C -0.154 4.154 6 Cl 0.013 6.987 7 C -0.141 4.141 8 C 0.368 3.632 9 O -0.385 6.385 10 N -0.361 5.361 11 C -0.006 4.006 12 C -0.166 4.166 13 C -0.163 4.163 14 C 0.055 3.945 15 H 0.049 0.951 16 C -0.162 4.162 17 C -0.189 4.189 18 C 0.041 3.959 19 N -0.321 5.321 20 C -0.352 4.352 21 H 0.093 0.907 22 C -0.204 4.204 23 N -0.569 5.569 24 Si 0.740 3.260 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.211 1.211 28 H 0.111 0.889 29 H 0.122 0.878 30 H 0.116 0.884 31 H 0.213 0.787 32 H 0.238 0.762 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.035 0.965 44 H 0.102 0.898 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.342 24.824 -4.685 25.298 hybrid contribution 1.310 -1.161 -0.102 1.753 sum 2.653 23.663 -4.788 24.288 Atomic orbital electron populations 1.22328 0.71966 1.06045 1.05174 1.45518 1.07760 1.01422 1.50661 1.73253 1.03333 1.13223 1.20358 1.23545 0.93918 0.92653 1.05226 1.21279 0.87408 0.92638 1.14050 1.98377 1.32940 1.70189 1.97217 1.21304 0.90929 0.89760 1.12126 1.16852 0.77983 0.83618 0.84704 1.90901 1.49669 1.66634 1.31311 1.46080 1.69813 1.12126 1.08039 1.21666 1.01651 0.78284 0.98990 1.21846 1.01985 0.98780 0.93963 1.22050 1.01954 0.91720 1.00567 1.20908 0.95347 0.85862 0.92385 0.95086 1.22593 0.97927 0.97253 0.98455 1.23018 0.98964 0.98071 0.98830 1.21583 0.86788 0.94543 0.92968 1.44568 1.21052 0.98987 1.67497 1.18956 0.95165 0.87231 1.33873 0.90686 1.24808 0.96780 0.97387 1.01474 1.69904 1.18653 1.16389 1.51942 0.86230 0.79809 0.80920 0.79005 1.21190 1.21636 1.21138 0.88905 0.87776 0.88370 0.78683 0.76216 0.90881 0.90790 0.91489 0.91612 0.92186 0.91558 0.92682 0.92118 0.92626 0.92474 0.96503 0.89761 0.93726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.45 11.22 59.85 0.67 1.12 16 2 N -0.27 -2.42 3.75 -63.85 -0.24 -2.66 16 3 N -0.27 -2.62 11.89 30.61 0.36 -2.26 16 4 C 0.02 0.22 12.04 -17.39 -0.21 0.01 16 5 C -0.12 -1.21 6.89 -38.88 -0.27 -1.48 16 6 Cl -0.02 -0.16 29.24 -51.86 -1.52 -1.68 16 7 C -0.01 -0.11 6.72 -82.00 -0.55 -0.66 16 8 C 0.59 7.10 6.91 -12.69 -0.09 7.01 16 9 O -0.51 -8.15 17.12 5.25 0.09 -8.06 16 10 N -0.71 -7.14 5.55 -61.51 -0.34 -7.48 16 11 C 0.12 1.36 5.68 -4.04 -0.02 1.34 16 12 C -0.13 -1.50 5.10 -26.73 -0.14 -1.64 16 13 C -0.12 -2.04 4.71 -26.73 -0.13 -2.17 16 14 C 0.16 3.12 3.16 -66.95 -0.21 2.91 16 15 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 16 C -0.12 -2.03 5.70 -24.90 -0.14 -2.17 16 17 C -0.15 -2.77 7.09 -24.58 -0.17 -2.94 16 18 C 0.17 3.96 5.58 -2.53 -0.01 3.95 16 19 N -0.60 -14.69 3.13 -162.58 -0.51 -15.20 16 20 C -0.22 -6.07 9.74 -15.06 -0.15 -6.22 16 21 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 22 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 23 N -0.92 -26.77 10.32 55.49 0.57 -26.19 16 24 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.53 7.66 -51.93 -0.40 0.14 16 31 H 0.20 1.12 8.06 -52.49 -0.42 0.69 16 32 H 0.40 3.10 8.46 -40.82 -0.35 2.76 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.69 7.64 -51.93 -0.40 0.29 16 37 H 0.06 1.06 8.02 -51.93 -0.42 0.64 16 38 H 0.07 1.23 7.84 -51.93 -0.41 0.83 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.94 7.77 -51.93 -0.40 0.53 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.08 2.27 6.44 -51.93 -0.33 1.94 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 387.33 15.07 5.84 5.84 Total: -1.00 -33.26 387.33 -9.18 -42.44 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -6.90 Total: -0.46 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -1.51 Total: -1.26 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.15 Total: -53.80 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.09 Total: -8.06 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.52 Total: -1.68 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.26 -9.18 -42.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317423069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.887 kcal (2) G-P(sol) polarization free energy of solvation -33.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds