Wall clock time and date at job start Sat Apr 11 2020 06:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35632 * 124.93566 * 2 1 4 4 C 1.35463 * 107.13414 * 179.97438 * 3 2 1 5 5 Cl 1.73597 * 127.24146 * 179.97438 * 4 3 2 6 6 C 1.41547 * 105.51888 * 359.97438 * 4 3 2 7 7 C 1.47672 * 126.45786 * 180.02562 * 6 4 3 8 8 O 1.21576 * 119.99909 * 359.97438 * 7 6 4 9 9 N 1.34770 * 119.99721 * 179.97438 * 7 6 4 10 10 C 1.46504 * 120.00028 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47181 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47096 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47354 * 186.09272 * 12 11 10 14 14 H 1.09004 * 109.86629 * 50.48216 * 13 12 11 15 15 C 1.54320 * 109.88061 * 171.65378 * 13 12 11 16 16 C 1.55160 * 102.93873 * 141.61296 * 15 13 12 17 17 C 1.54909 * 101.58340 * 324.49786 * 16 15 13 18 18 N 1.47015 * 109.88211 * 289.46894 * 13 12 11 19 19 C 1.36938 * 125.65079 * 61.60300 * 18 13 12 20 20 H 1.07999 * 120.00250 * 307.13237 * 19 18 13 21 21 C 1.38810 * 119.99742 * 127.13488 * 19 18 13 22 22 N 1.31621 * 119.99703 * 172.04937 * 21 19 18 23 23 Si 1.86795 * 120.00230 * 352.04079 * 21 19 18 24 24 H 1.48505 * 109.47257 * 93.99429 * 23 21 19 25 25 H 1.48503 * 109.47457 * 213.99106 * 23 21 19 26 26 H 1.48502 * 109.47407 * 333.99769 * 23 21 19 27 27 N 1.28469 * 124.93348 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.46878 * 270.00247 * 1 2 3 29 29 H 1.08996 * 109.47139 * 29.99583 * 1 2 3 30 30 H 1.08993 * 109.47226 * 150.00500 * 1 2 3 31 31 H 1.08007 * 126.43668 * 359.95416 * 3 2 1 32 32 H 0.97007 * 120.00267 * 0.02562 * 9 7 6 33 33 H 1.08990 * 109.47008 * 300.00505 * 10 9 7 34 34 H 1.09001 * 109.47022 * 60.00049 * 10 9 7 35 35 H 1.09002 * 109.47129 * 300.00145 * 11 10 9 36 36 H 1.09001 * 109.47103 * 60.00099 * 11 10 9 37 37 H 1.09000 * 109.47253 * 306.09259 * 12 11 10 38 38 H 1.09001 * 109.47240 * 66.09460 * 12 11 10 39 39 H 1.09002 * 110.72284 * 259.97525 * 15 13 12 40 40 H 1.08996 * 110.72415 * 23.25237 * 15 13 12 41 41 H 1.09000 * 111.00878 * 206.42103 * 16 15 13 42 42 H 1.09002 * 111.03725 * 82.58656 * 16 15 13 43 43 H 1.09000 * 110.36852 * 278.17586 * 17 16 15 44 44 H 1.08997 * 110.36860 * 155.84775 * 17 16 15 45 45 H 0.97008 * 119.99565 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2418 1.1119 0.0000 4 6 3.5316 0.6978 0.0006 5 17 4.9543 1.6924 0.0002 6 6 3.4752 -0.7166 0.0015 7 6 4.6270 -1.6407 0.0030 8 8 5.7600 -1.1999 0.0029 9 7 4.4221 -2.9727 0.0043 10 6 5.5648 -3.8896 0.0063 11 6 5.0598 -5.3339 0.0068 12 6 6.2532 -6.2914 0.0095 13 6 5.7536 -7.7295 -0.1430 14 1 5.0714 -7.7967 -0.9906 15 6 6.9502 -8.6814 -0.3515 16 6 6.5410 -9.9372 0.4627 17 6 5.7928 -9.3011 1.6606 18 7 5.0674 -8.1534 1.0861 19 6 3.9413 -7.5772 1.6108 20 1 3.9128 -6.5126 1.7898 21 6 2.8366 -8.3616 1.9126 22 7 1.8158 -7.8397 2.5591 23 14 2.7987 -10.1578 1.4012 24 1 3.2869 -11.0019 2.5213 25 1 1.4066 -10.5459 1.0594 26 1 3.6724 -10.3539 0.2166 27 7 2.2007 -1.0532 0.0005 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5137 31 1 1.8968 2.1354 -0.0007 32 1 3.5181 -3.3245 0.0039 33 1 6.1705 -3.7172 -0.8833 34 1 6.1690 -3.7152 0.8966 35 1 4.4539 -5.5066 0.8962 36 1 4.4559 -5.5079 -0.8837 37 1 6.9167 -6.0474 -0.8201 38 1 6.7957 -6.1931 0.9498 39 1 7.0680 -8.9275 -1.4068 40 1 7.8651 -8.2440 0.0481 41 1 7.4194 -10.4883 0.7987 42 1 5.8772 -10.5796 -0.1160 43 1 6.5030 -8.9619 2.4147 44 1 5.0918 -10.0153 2.0926 45 1 1.0436 -8.3878 2.7697 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317423911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:50 Heat of formation + Delta-G solvation = 58.657461 kcal Electronic energy + Delta-G solvation = -26971.542483 eV Core-core repulsion = 23052.459529 eV Total energy + Delta-G solvation = -3919.082954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.88905 -39.18482 -38.02342 -36.60162 -35.19108 -33.68082 -32.58610 -32.40312 -30.86538 -29.88536 -28.73666 -27.49042 -24.92703 -24.13031 -22.66142 -21.80687 -21.25251 -20.30972 -19.96258 -19.21095 -18.04786 -16.94118 -16.64943 -16.60362 -16.10831 -15.49806 -15.16316 -14.83461 -14.47310 -14.18640 -14.15414 -13.46535 -13.44065 -13.20112 -13.10744 -12.77239 -12.52307 -12.34370 -11.99832 -11.97901 -11.92278 -11.68723 -11.29201 -11.15603 -10.87305 -10.78704 -10.72292 -10.54076 -10.25036 -10.07793 -9.91254 -9.83463 -9.67205 -9.56106 -9.31936 -9.00768 -8.72425 -8.50872 -6.44742 -5.95602 -3.64667 1.39082 1.68399 1.73079 2.50213 3.32867 3.35555 3.44326 3.44839 3.52963 4.14230 4.38956 4.51988 4.68459 4.73364 4.98009 5.02581 5.08728 5.18518 5.20260 5.34214 5.51389 5.60656 5.62281 5.69816 5.79010 5.91681 6.07677 6.13169 6.20534 6.25345 6.32689 6.37137 6.41820 6.52878 6.55732 6.68034 6.78940 6.82958 6.94534 7.09584 7.15911 7.46271 7.81006 8.11109 8.38321 8.50118 8.89522 9.64869 10.36252 11.13167 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014373 B = 0.002616 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.650125 B =10701.835132 C =12315.061953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.280 5.280 3 C -0.006 4.006 4 C -0.104 4.104 5 Cl -0.011 7.011 6 C 0.001 3.999 7 C 0.596 3.404 8 O -0.525 6.525 9 N -0.709 5.709 10 C 0.121 3.879 11 C -0.142 4.142 12 C -0.112 4.112 13 C 0.155 3.845 14 H 0.040 0.960 15 C -0.126 4.126 16 C -0.139 4.139 17 C 0.119 3.881 18 N -0.602 5.602 19 C -0.255 4.255 20 H 0.087 0.913 21 C 0.044 3.956 22 N -0.905 5.905 23 Si 0.891 3.109 24 H -0.287 1.287 25 H -0.303 1.303 26 H -0.262 1.262 27 N -0.241 5.241 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.191 0.809 32 H 0.409 0.591 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.038 0.962 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.596 15.533 -7.249 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.068 5.068 3 C -0.149 4.149 4 C -0.141 4.141 5 Cl 0.018 6.982 6 C -0.161 4.161 7 C 0.379 3.621 8 O -0.400 6.400 9 N -0.360 5.360 10 C -0.002 4.002 11 C -0.179 4.179 12 C -0.152 4.152 13 C 0.049 3.951 14 H 0.058 0.942 15 C -0.164 4.164 16 C -0.177 4.177 17 C -0.005 4.005 18 N -0.329 5.329 19 C -0.383 4.383 20 H 0.104 0.896 21 C -0.158 4.158 22 N -0.545 5.545 23 Si 0.721 3.279 24 H -0.215 1.215 25 H -0.231 1.231 26 H -0.187 1.187 27 N -0.077 5.077 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.208 0.792 32 H 0.245 0.755 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.126 0.874 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.056 0.944 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.751 15.000 -7.142 16.630 hybrid contribution -0.181 -0.355 -0.110 0.413 sum -0.933 14.645 -7.251 16.368 Atomic orbital electron populations 1.22288 0.72074 1.05857 1.05058 1.45394 1.08069 1.02638 1.50717 1.22608 0.89372 0.94234 1.08721 1.20825 0.89299 0.91111 1.12879 1.98359 1.35726 1.66994 1.97141 1.21995 0.91381 0.92535 1.10144 1.16771 0.86299 0.81745 0.77252 1.90817 1.21950 1.77085 1.50125 1.45938 1.11519 1.05038 1.73493 1.21555 0.87709 0.89314 1.01584 1.22189 0.99654 0.90698 1.05350 1.21847 0.96545 0.96235 1.00559 1.21115 0.91896 0.91383 0.90712 0.94226 1.22576 0.98374 0.96308 0.99131 1.22794 0.99443 0.97112 0.98355 1.21855 0.94091 0.90694 0.93900 1.44569 1.29071 1.36291 1.22978 1.18622 0.87747 0.93997 1.37920 0.89633 1.25877 0.94759 0.98484 0.96700 1.69782 1.07273 1.36640 1.40784 0.86601 0.75899 0.85795 0.79627 1.21462 1.23075 1.18696 1.73706 1.02098 1.13775 1.18098 0.89150 0.88359 0.87903 0.79176 0.75523 0.92137 0.91674 0.87372 0.92129 0.93422 0.92193 0.92111 0.91721 0.92037 0.91872 0.95537 0.94392 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.41 11.32 59.85 0.68 1.09 16 2 N -0.28 -2.73 3.72 -67.94 -0.25 -2.99 16 3 C -0.01 -0.05 11.49 -16.86 -0.19 -0.25 16 4 C -0.10 -1.34 6.80 -39.31 -0.27 -1.61 16 5 Cl -0.01 -0.14 28.17 -51.86 -1.46 -1.60 16 6 C 0.00 0.01 7.13 -82.76 -0.59 -0.58 16 7 C 0.60 10.11 7.82 -12.41 -0.10 10.01 16 8 O -0.53 -10.02 15.87 5.30 0.08 -9.94 16 9 N -0.71 -11.43 5.55 -61.31 -0.34 -11.77 16 10 C 0.12 1.96 5.67 -4.04 -0.02 1.94 16 11 C -0.14 -2.48 4.86 -26.73 -0.13 -2.61 16 12 C -0.11 -1.92 4.69 -26.73 -0.13 -2.05 16 13 C 0.15 2.99 3.21 -66.96 -0.22 2.78 16 14 H 0.04 0.81 8.10 -51.93 -0.42 0.39 16 15 C -0.13 -2.04 6.47 -24.90 -0.16 -2.20 16 16 C -0.14 -2.42 7.08 -24.58 -0.17 -2.59 16 17 C 0.12 2.52 6.19 -2.52 -0.02 2.51 16 18 N -0.60 -13.90 2.38 -162.57 -0.39 -14.28 16 19 C -0.25 -6.79 9.35 -15.06 -0.14 -6.93 16 20 H 0.09 2.40 5.18 -52.49 -0.27 2.13 16 21 C 0.04 1.22 5.50 -17.43 -0.10 1.13 16 22 N -0.90 -26.77 13.97 55.49 0.78 -26.00 16 23 Si 0.89 22.18 25.12 -169.99 -4.27 17.91 16 24 H -0.29 -7.11 7.00 56.52 0.40 -6.72 16 25 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 26 H -0.26 -6.34 6.44 56.52 0.36 -5.98 16 27 N -0.24 -3.25 11.66 33.42 0.39 -2.86 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.10 0.15 8.13 -51.93 -0.42 -0.27 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.19 0.94 8.06 -52.48 -0.42 0.52 16 32 H 0.41 6.39 8.19 -40.82 -0.33 6.06 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.11 2.27 4.50 -51.93 -0.23 2.03 16 36 H 0.06 1.05 8.11 -51.93 -0.42 0.63 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.96 7.85 -51.93 -0.41 0.56 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.06 1.14 7.54 -51.93 -0.39 0.75 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.04 0.87 4.62 -51.93 -0.24 0.63 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 376.48 15.07 5.67 5.67 Total: -1.00 -33.57 376.48 -7.89 -41.46 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.55 Total: 3.76 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -1.55 Total: 0.63 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.18 Total: -57.90 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.94 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.27 Total: 17.91 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.46 Total: -1.60 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.57 -7.89 -41.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317423911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.119 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds