Wall clock time and date at job start Sat Apr 11 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35632 * 124.93566 * 2 1 4 4 C 1.35463 * 107.13414 * 179.97438 * 3 2 1 5 5 Cl 1.73597 * 127.24146 * 179.97438 * 4 3 2 6 6 C 1.41547 * 105.51888 * 359.97438 * 4 3 2 7 7 C 1.47672 * 126.45786 * 180.02562 * 6 4 3 8 8 O 1.21576 * 119.99909 * 359.97438 * 7 6 4 9 9 N 1.34770 * 119.99721 * 179.97438 * 7 6 4 10 10 C 1.46504 * 120.00028 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47181 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47096 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47354 * 186.09272 * 12 11 10 14 14 H 1.09004 * 109.86629 * 50.48216 * 13 12 11 15 15 C 1.54320 * 109.88061 * 171.65378 * 13 12 11 16 16 C 1.55160 * 102.93873 * 141.61296 * 15 13 12 17 17 C 1.54909 * 101.58340 * 324.49786 * 16 15 13 18 18 N 1.47015 * 109.88211 * 289.46894 * 13 12 11 19 19 C 1.36938 * 125.65079 * 61.60300 * 18 13 12 20 20 H 1.07999 * 120.00250 * 307.13237 * 19 18 13 21 21 C 1.38810 * 119.99742 * 127.13488 * 19 18 13 22 22 N 1.31621 * 119.99703 * 172.04937 * 21 19 18 23 23 Si 1.86795 * 120.00230 * 352.04079 * 21 19 18 24 24 H 1.48505 * 109.47257 * 93.99429 * 23 21 19 25 25 H 1.48503 * 109.47457 * 213.99106 * 23 21 19 26 26 H 1.48502 * 109.47407 * 333.99769 * 23 21 19 27 27 N 1.28469 * 124.93348 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.46878 * 270.00247 * 1 2 3 29 29 H 1.08996 * 109.47139 * 29.99583 * 1 2 3 30 30 H 1.08993 * 109.47226 * 150.00500 * 1 2 3 31 31 H 1.08007 * 126.43668 * 359.95416 * 3 2 1 32 32 H 0.97007 * 120.00267 * 0.02562 * 9 7 6 33 33 H 1.08990 * 109.47008 * 300.00505 * 10 9 7 34 34 H 1.09001 * 109.47022 * 60.00049 * 10 9 7 35 35 H 1.09002 * 109.47129 * 300.00145 * 11 10 9 36 36 H 1.09001 * 109.47103 * 60.00099 * 11 10 9 37 37 H 1.09000 * 109.47253 * 306.09259 * 12 11 10 38 38 H 1.09001 * 109.47240 * 66.09460 * 12 11 10 39 39 H 1.09002 * 110.72284 * 259.97525 * 15 13 12 40 40 H 1.08996 * 110.72415 * 23.25237 * 15 13 12 41 41 H 1.09000 * 111.00878 * 206.42103 * 16 15 13 42 42 H 1.09002 * 111.03725 * 82.58656 * 16 15 13 43 43 H 1.09000 * 110.36852 * 278.17586 * 17 16 15 44 44 H 1.08997 * 110.36860 * 155.84775 * 17 16 15 45 45 H 0.97008 * 119.99565 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2418 1.1119 0.0000 4 6 3.5316 0.6978 0.0006 5 17 4.9543 1.6924 0.0002 6 6 3.4752 -0.7166 0.0015 7 6 4.6270 -1.6407 0.0030 8 8 5.7600 -1.1999 0.0029 9 7 4.4221 -2.9727 0.0043 10 6 5.5648 -3.8896 0.0063 11 6 5.0598 -5.3339 0.0068 12 6 6.2532 -6.2914 0.0095 13 6 5.7536 -7.7295 -0.1430 14 1 5.0714 -7.7967 -0.9906 15 6 6.9502 -8.6814 -0.3515 16 6 6.5410 -9.9372 0.4627 17 6 5.7928 -9.3011 1.6606 18 7 5.0674 -8.1534 1.0861 19 6 3.9413 -7.5772 1.6108 20 1 3.9128 -6.5126 1.7898 21 6 2.8366 -8.3616 1.9126 22 7 1.8158 -7.8397 2.5591 23 14 2.7987 -10.1578 1.4012 24 1 3.2869 -11.0019 2.5213 25 1 1.4066 -10.5459 1.0594 26 1 3.6724 -10.3539 0.2166 27 7 2.2007 -1.0532 0.0005 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5137 31 1 1.8968 2.1354 -0.0007 32 1 3.5181 -3.3245 0.0039 33 1 6.1705 -3.7172 -0.8833 34 1 6.1690 -3.7152 0.8966 35 1 4.4539 -5.5066 0.8962 36 1 4.4559 -5.5079 -0.8837 37 1 6.9167 -6.0474 -0.8201 38 1 6.7957 -6.1931 0.9498 39 1 7.0680 -8.9275 -1.4068 40 1 7.8651 -8.2440 0.0481 41 1 7.4194 -10.4883 0.7987 42 1 5.8772 -10.5796 -0.1160 43 1 6.5030 -8.9619 2.4147 44 1 5.0918 -10.0153 2.0926 45 1 1.0436 -8.3878 2.7697 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317423911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:49 Heat of formation + Delta-G solvation = 35.687813 kcal Electronic energy + Delta-G solvation = -26972.538521 eV Core-core repulsion = 23052.459529 eV Total energy + Delta-G solvation = -3920.078992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.76505 -40.50483 -39.59619 -37.54302 -36.58514 -34.59969 -34.51690 -33.73000 -31.76295 -31.69414 -30.04811 -28.38582 -26.46394 -25.73187 -23.82640 -22.80565 -22.62287 -21.72670 -21.19439 -20.77506 -19.09022 -18.74708 -17.83148 -17.62338 -17.48034 -16.83974 -16.57785 -16.13334 -15.64845 -15.61476 -15.18352 -14.97671 -14.68471 -14.56217 -14.08938 -13.95035 -13.86792 -13.53700 -13.51712 -13.38103 -13.03101 -12.94695 -12.83949 -12.62757 -12.46590 -12.40897 -12.12949 -11.89056 -11.77393 -11.59471 -11.41192 -11.34706 -11.10939 -11.00797 -10.61284 -10.46934 -10.11582 -9.83893 -8.39362 -8.03757 -5.76015 0.35484 0.82851 0.93111 1.32510 1.39631 1.53525 1.68063 2.17169 2.22323 2.45351 3.13743 3.31568 3.46031 3.67909 3.87134 3.92371 4.05717 4.18195 4.19599 4.27926 4.30037 4.40922 4.44643 4.49625 4.59321 4.71516 4.72460 4.81391 4.82800 4.85871 4.94837 5.00563 5.05603 5.20461 5.23751 5.30642 5.42721 5.46196 5.56280 5.64601 5.68434 6.05092 6.35737 6.46664 6.69165 6.99726 7.08863 7.58034 8.36513 9.02856 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014373 B = 0.002616 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.650125 B =10701.835132 C =12315.061953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.270 5.270 3 C 0.024 3.976 4 C -0.132 4.132 5 Cl -0.019 7.019 6 C -0.033 4.033 7 C 0.593 3.407 8 O -0.554 6.554 9 N -0.709 5.709 10 C 0.131 3.869 11 C -0.129 4.129 12 C -0.105 4.105 13 C 0.145 3.855 14 H 0.028 0.972 15 C -0.115 4.115 16 C -0.130 4.130 17 C 0.108 3.892 18 N -0.619 5.619 19 C -0.238 4.238 20 H 0.063 0.937 21 C -0.013 4.013 22 N -0.951 5.951 23 Si 0.946 3.054 24 H -0.286 1.286 25 H -0.310 1.310 26 H -0.249 1.249 27 N -0.263 5.263 28 H 0.103 0.897 29 H 0.140 0.860 30 H 0.100 0.900 31 H 0.240 0.760 32 H 0.410 0.590 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.057 0.943 43 H 0.031 0.969 44 H 0.018 0.982 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.000 15.898 -8.858 18.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.059 5.059 3 C -0.120 4.120 4 C -0.169 4.169 5 Cl 0.010 6.990 6 C -0.192 4.192 7 C 0.377 3.623 8 O -0.431 6.431 9 N -0.360 5.360 10 C 0.008 3.992 11 C -0.166 4.166 12 C -0.145 4.145 13 C 0.040 3.960 14 H 0.046 0.954 15 C -0.153 4.153 16 C -0.168 4.168 17 C -0.016 4.016 18 N -0.346 5.346 19 C -0.367 4.367 20 H 0.080 0.920 21 C -0.210 4.210 22 N -0.595 5.595 23 Si 0.775 3.225 24 H -0.213 1.213 25 H -0.239 1.239 26 H -0.173 1.173 27 N -0.101 5.101 28 H 0.122 0.878 29 H 0.158 0.842 30 H 0.119 0.881 31 H 0.256 0.744 32 H 0.245 0.755 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.075 0.925 43 H 0.049 0.951 44 H 0.036 0.964 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.136 15.342 -8.770 17.672 hybrid contribution -0.420 -0.353 0.414 0.687 sum -0.556 14.989 -8.356 17.170 Atomic orbital electron populations 1.22790 0.69095 1.07881 1.06571 1.45964 1.09607 1.01994 1.48315 1.23289 0.87781 0.95805 1.05163 1.21069 0.90548 0.90368 1.14957 1.98346 1.36554 1.66819 1.97292 1.21788 0.91406 0.93219 1.12822 1.17112 0.86794 0.81930 0.76425 1.90777 1.23210 1.77537 1.51594 1.45957 1.11473 1.05168 1.73405 1.21407 0.87701 0.88448 1.01599 1.21968 0.99516 0.91895 1.03233 1.21773 0.96427 0.94836 1.01422 1.21335 0.92866 0.93325 0.88455 0.95412 1.22580 0.97275 0.94575 1.00844 1.22766 1.00063 0.97539 0.96452 1.22005 0.93961 0.89804 0.95843 1.44741 1.28568 1.36718 1.24604 1.18636 0.88786 0.93307 1.36022 0.92047 1.26488 0.94795 1.02110 0.97594 1.69906 1.08242 1.37992 1.43335 0.85708 0.75427 0.81709 0.79644 1.21331 1.23909 1.17269 1.73652 1.01917 1.15577 1.18954 0.87835 0.84207 0.88125 0.74379 0.75455 0.90946 0.92658 0.91209 0.92257 0.90110 0.93032 0.89337 0.89786 0.88598 0.92457 0.95122 0.96361 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 11.32 127.77 1.45 1.94 16 2 N -0.27 -4.75 3.72 -368.85 -1.37 -6.12 16 3 C 0.02 0.38 11.49 83.46 0.96 1.34 16 4 C -0.13 -3.32 6.80 22.44 0.15 -3.17 16 5 Cl -0.02 -0.47 28.17 -2.72 -0.08 -0.55 16 6 C -0.03 -1.01 7.13 42.46 0.30 -0.70 16 7 C 0.59 20.85 7.82 86.74 0.68 21.53 16 8 O -0.55 -21.85 15.87 -3.95 -0.06 -21.91 16 9 N -0.71 -23.90 5.55 -466.15 -2.59 -26.49 16 10 C 0.13 4.34 5.67 86.38 0.49 4.83 16 11 C -0.13 -4.60 4.86 30.59 0.15 -4.45 16 12 C -0.10 -3.47 4.69 30.60 0.14 -3.33 16 13 C 0.15 5.37 3.21 45.34 0.15 5.52 16 14 H 0.03 1.10 8.10 -2.38 -0.02 1.08 16 15 C -0.11 -3.27 6.47 31.78 0.21 -3.06 16 16 C -0.13 -4.06 7.08 31.99 0.23 -3.84 16 17 C 0.11 4.42 6.19 86.85 0.54 4.96 16 18 N -0.62 -28.36 2.38 -668.26 -1.59 -29.95 16 19 C -0.24 -13.06 9.35 84.03 0.79 -12.28 16 20 H 0.06 3.66 5.18 -2.91 -0.02 3.65 16 21 C -0.01 -0.74 5.50 84.86 0.47 -0.27 16 22 N -0.95 -58.61 13.97 21.65 0.30 -58.31 16 23 Si 0.95 46.58 25.12 68.60 1.72 48.30 16 24 H -0.29 -13.87 7.00 99.48 0.70 -13.17 16 25 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 26 H -0.25 -11.52 6.44 99.48 0.64 -10.88 16 27 N -0.26 -7.08 11.66 -48.17 -0.56 -7.64 16 28 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.14 -0.20 8.13 -2.39 -0.02 -0.22 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.24 1.23 8.06 -2.91 -0.02 1.21 16 32 H 0.41 13.60 8.19 -92.70 -0.76 12.84 16 33 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.07 3.09 4.50 -2.39 -0.01 3.08 16 36 H 0.06 2.10 8.11 -2.39 -0.02 2.08 16 37 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.08 2.11 7.85 -2.39 -0.02 2.09 16 41 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.06 1.87 7.54 -2.39 -0.02 1.85 16 43 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.02 0.82 4.62 -2.39 -0.01 0.81 16 45 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 Total: -1.00 -77.22 376.48 2.65 -74.58 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.18 Total: 19.10 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 6.69 Total: 9.00 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -5.81 Total: -128.52 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.06 Total: -21.91 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.72 Total: 48.30 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.08 Total: -0.55 kcal Total: -77.22 2.65 -74.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317423911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.264 kcal (2) G-P(sol) polarization free energy of solvation -77.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds