Wall clock time and date at job start Sat Apr 11 2020 06:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34607 * 126.48778 * 2 1 4 4 Cl 1.73596 * 125.43858 * 359.97438 * 3 2 1 5 5 N 1.31024 * 109.12412 * 180.02562 * 3 2 1 6 6 C 1.33300 * 109.71002 * 0.02562 * 5 3 2 7 7 C 1.36674 * 107.82657 * 359.97438 * 6 5 3 8 8 C 1.46662 * 126.84090 * 179.74215 * 7 6 5 9 9 O 1.21700 * 120.00266 * 154.39780 * 8 7 6 10 10 N 1.34780 * 119.99815 * 334.39042 * 8 7 6 11 11 C 1.46925 * 120.63022 * 359.08986 * 10 8 7 12 12 C 1.52761 * 109.00760 * 233.57957 * 11 10 8 13 13 C 1.53043 * 109.38367 * 305.58776 * 12 11 10 14 14 C 1.52992 * 109.45889 * 181.26013 * 13 12 11 15 15 C 1.53001 * 109.47218 * 64.93312 * 14 13 12 16 16 N 1.46497 * 109.47624 * 179.97438 * 15 14 13 17 17 C 1.36935 * 120.00456 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00019 * 0.02562 * 17 16 15 19 19 C 1.38815 * 119.99667 * 180.02562 * 17 16 15 20 20 N 1.31615 * 120.00512 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99492 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47717 * 89.99882 * 21 19 17 23 23 H 1.48503 * 109.46896 * 209.99977 * 21 19 17 24 24 H 1.48510 * 109.46961 * 329.99536 * 21 19 17 25 25 C 1.53039 * 109.53645 * 61.23757 * 13 12 11 26 26 C 1.46922 * 120.62989 * 179.36169 * 10 8 7 27 27 H 1.08999 * 109.46870 * 264.53105 * 1 2 3 28 28 H 1.09002 * 109.47454 * 24.52651 * 1 2 3 29 29 H 1.09000 * 109.47125 * 144.53261 * 1 2 3 30 30 H 1.08001 * 126.08659 * 180.02562 * 6 5 3 31 31 H 1.08997 * 109.58672 * 353.41474 * 11 10 8 32 32 H 1.09000 * 109.58516 * 113.84018 * 11 10 8 33 33 H 1.09000 * 109.56011 * 185.55126 * 12 11 10 34 34 H 1.08999 * 109.36075 * 65.50126 * 12 11 10 35 35 H 1.09007 * 109.45785 * 301.22000 * 13 12 11 36 36 H 1.08998 * 109.47265 * 184.92995 * 14 13 12 37 37 H 1.08999 * 109.47551 * 304.93583 * 14 13 12 38 38 H 1.09001 * 109.47466 * 299.99921 * 15 14 13 39 39 H 1.09004 * 109.47337 * 59.99838 * 15 14 13 40 40 H 0.97003 * 119.99584 * 0.02562 * 16 15 14 41 41 H 0.97002 * 119.99933 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.49759 * 178.68054 * 25 13 12 43 43 H 1.09007 * 109.52120 * 58.60307 * 25 13 12 44 44 H 1.08996 * 109.59091 * 246.16041 * 26 10 8 45 45 H 1.09002 * 109.59088 * 6.44538 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2654 1.0822 0.0000 4 17 1.7269 2.7325 -0.0006 5 7 3.5159 0.6912 -0.0006 6 6 3.5705 -0.6407 -0.0015 7 6 2.2876 -1.1120 -0.0009 8 6 1.8669 -2.5170 -0.0069 9 8 0.7829 -2.8296 0.4494 10 7 2.6809 -3.4620 -0.5179 11 6 3.9840 -3.0976 -1.0905 12 6 4.0807 -3.6626 -2.5065 13 6 3.8075 -5.1681 -2.4725 14 6 3.9348 -5.7412 -3.8852 15 6 5.3813 -5.6015 -4.3639 16 7 5.5034 -6.1508 -5.7164 17 6 6.7146 -6.1350 -6.3552 18 1 7.5799 -5.7179 -5.8617 19 6 6.8300 -6.6551 -7.6370 20 7 5.7756 -7.1639 -8.2383 21 14 8.4824 -6.6341 -8.5081 22 1 9.2196 -7.8862 -8.2016 23 1 8.2680 -6.5321 -9.9740 24 1 9.2733 -5.4671 -8.0411 25 6 2.3928 -5.4197 -1.9456 26 6 2.2794 -4.8753 -0.5182 27 1 -0.3633 -0.0979 1.0230 28 1 -0.3634 0.9349 -0.4266 29 1 -0.3633 -0.8370 -0.5963 30 1 4.4686 -1.2406 -0.0017 31 1 4.0776 -2.0122 -1.1245 32 1 4.7823 -3.5163 -0.4777 33 1 5.0798 -3.4830 -2.9036 34 1 3.3427 -3.1732 -3.1420 35 1 4.5307 -5.6536 -1.8172 36 1 3.6552 -6.7947 -3.8765 37 1 3.2747 -5.1957 -4.5596 38 1 5.6610 -4.5480 -4.3727 39 1 6.0415 -6.1470 -3.6896 40 1 4.7261 -6.5252 -6.1599 41 1 5.8563 -7.5270 -9.1342 42 1 2.1905 -6.4907 -1.9437 43 1 1.6703 -4.9141 -2.5863 44 1 2.9359 -5.4418 0.1421 45 1 1.2494 -4.9627 -0.1723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318897779.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:10 Heat of formation + Delta-G solvation = 43.473113 kcal Electronic energy + Delta-G solvation = -27078.958847 eV Core-core repulsion = 23159.217451 eV Total energy + Delta-G solvation = -3919.741396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.84973 -40.22951 -38.03513 -37.50339 -35.54554 -34.67089 -33.66314 -32.04917 -31.05267 -29.99415 -28.43201 -27.70090 -25.48598 -23.78193 -23.69060 -22.42761 -22.08179 -20.96963 -20.34224 -19.49869 -17.90056 -17.31852 -16.97963 -16.71840 -16.43032 -15.42536 -15.27317 -14.88273 -14.77369 -14.56040 -14.20893 -13.90599 -13.70919 -13.68135 -13.62209 -13.32965 -12.94696 -12.92246 -12.71207 -12.36175 -12.15290 -12.06225 -11.40670 -11.29710 -11.18032 -11.06983 -10.92034 -10.76627 -10.62136 -10.37382 -10.30402 -10.28285 -10.11735 -9.94631 -9.67090 -9.09261 -8.86490 -8.84103 -6.90476 -5.75768 -3.04239 0.68257 0.76280 2.04492 2.18315 2.70917 2.82081 3.43994 3.48944 3.50790 3.93009 4.16739 4.30286 4.56443 4.60513 4.67671 4.70789 4.75437 4.79092 4.90629 4.99812 5.09452 5.21167 5.31561 5.39419 5.52517 5.55553 5.64125 5.66212 5.78348 5.79017 5.84284 5.96317 6.03707 6.10680 6.15020 6.28362 6.34385 6.40570 6.43781 6.86787 6.91782 6.97887 7.15011 7.70377 7.71088 8.43524 9.54287 10.13595 10.47500 11.47300 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015252 B = 0.002152 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.379541 B =13006.344091 C =14200.648624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.414 5.414 3 C 0.259 3.741 4 Cl 0.044 6.956 5 N -0.465 5.465 6 C 0.036 3.964 7 C -0.062 4.062 8 C 0.595 3.405 9 O -0.544 6.544 10 N -0.590 5.590 11 C 0.073 3.927 12 C -0.132 4.132 13 C -0.083 4.083 14 C -0.121 4.121 15 C 0.153 3.847 16 N -0.735 5.735 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.129 4.129 26 C 0.115 3.885 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.204 0.796 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.020 0.980 39 H 0.016 0.984 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.892 15.056 21.296 28.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.098 5.098 3 C -0.027 4.027 4 Cl 0.071 6.929 5 N -0.186 5.186 6 C -0.118 4.118 7 C -0.179 4.179 8 C 0.382 3.618 9 O -0.423 6.423 10 N -0.322 5.322 11 C -0.049 4.049 12 C -0.170 4.170 13 C -0.102 4.102 14 C -0.159 4.159 15 C 0.025 3.975 16 N -0.379 5.379 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.167 4.167 26 C -0.007 4.007 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.118 0.882 30 H 0.220 0.780 31 H 0.125 0.875 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.034 0.966 40 H 0.216 0.784 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.882 15.595 21.496 29.094 hybrid contribution -0.088 -0.457 -0.806 0.930 sum -11.970 15.138 20.690 28.294 Atomic orbital electron populations 1.22315 0.74498 1.05304 1.05299 1.45038 1.08546 1.04422 1.51754 1.23256 0.86620 0.84543 1.08287 1.98440 1.88643 1.08736 1.97068 1.70127 1.16057 1.12598 1.19785 1.23164 0.96019 0.89957 1.02644 1.20774 0.91188 0.88490 1.17442 1.16640 0.83963 0.82854 0.78352 1.90823 1.21749 1.82214 1.47501 1.47786 1.18892 1.07239 1.58263 1.22646 0.83918 1.02815 0.95500 1.21977 1.03738 0.96045 0.95202 1.21102 0.96135 0.95277 0.97704 1.21756 0.98775 1.00834 0.94507 1.20700 0.92878 0.96227 0.87684 1.42392 1.09907 1.72709 1.12899 1.19238 0.87995 1.32838 0.96895 0.91204 1.24753 0.97348 1.01639 0.97430 1.69661 1.28102 1.46070 1.14508 0.86189 0.83401 0.77670 0.78940 1.21726 1.21778 1.20737 1.21996 0.97945 1.01579 0.95203 1.21724 1.02157 0.78983 0.97812 0.89075 0.88900 0.88224 0.77971 0.87488 0.90301 0.89308 0.91478 0.90801 0.91885 0.92077 0.96262 0.96609 0.78379 0.93540 0.90263 0.91479 0.90898 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 10.31 59.85 0.62 1.08 16 2 N -0.41 -4.00 3.18 -118.36 -0.38 -4.38 16 3 C 0.26 2.62 8.48 -90.33 -0.77 1.85 16 4 Cl 0.04 0.34 28.63 -51.86 -1.48 -1.15 16 5 N -0.46 -5.26 11.21 -11.49 -0.13 -5.39 16 6 C 0.04 0.35 9.58 -17.48 -0.17 0.18 16 7 C -0.06 -0.65 6.55 -82.10 -0.54 -1.18 16 8 C 0.59 6.70 7.54 -12.86 -0.10 6.60 16 9 O -0.54 -7.36 15.21 5.19 0.08 -7.29 16 10 N -0.59 -5.74 2.98 -174.58 -0.52 -6.26 16 11 C 0.07 0.61 5.37 -3.93 -0.02 0.59 16 12 C -0.13 -1.36 5.13 -26.83 -0.14 -1.50 16 13 C -0.08 -0.93 2.15 -90.58 -0.19 -1.12 16 14 C -0.12 -1.82 4.80 -26.73 -0.13 -1.95 16 15 C 0.15 2.95 6.01 -4.04 -0.02 2.93 16 16 N -0.74 -18.69 5.60 -59.91 -0.34 -19.03 16 17 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 20 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 21 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 C -0.13 -1.27 5.36 -26.61 -0.14 -1.41 16 26 C 0.11 1.06 6.44 -3.71 -0.02 1.04 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.42 7.62 -51.93 -0.40 0.03 16 29 H 0.10 0.74 7.54 -51.93 -0.39 0.35 16 30 H 0.20 1.43 5.76 -52.49 -0.30 1.12 16 31 H 0.11 0.83 3.40 -51.93 -0.18 0.65 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.97 6.50 -51.93 -0.34 0.63 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.37 6.53 -51.93 -0.34 0.03 16 39 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.38 10.25 7.67 -40.82 -0.31 9.94 16 41 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.93 7.00 -51.93 -0.36 0.56 16 LS Contribution 373.55 15.07 5.63 5.63 Total: -1.00 -34.07 373.55 -9.70 -43.77 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.39 Total: 4.73 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -1.87 Total: -0.33 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: -0.64 Total: -62.80 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: 0.08 Total: -7.29 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -1.48 Total: -1.15 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.07 -9.70 -43.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318897779.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.242 kcal (2) G-P(sol) polarization free energy of solvation -34.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds