Wall clock time and date at job start Sat Apr 11 2020 06:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28461 * 124.88904 * 2 1 4 4 C 1.31800 * 110.11366 * 180.02562 * 3 2 1 5 5 C 1.47715 * 126.51131 * 180.02562 * 4 3 2 6 6 O 1.21565 * 120.00218 * 180.02562 * 5 4 3 7 7 N 1.34779 * 119.99842 * 0.02562 * 5 4 3 8 8 C 1.46500 * 119.99793 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.47092 * 325.00176 * 8 7 5 10 10 C 1.52997 * 109.47204 * 85.00113 * 8 7 5 11 11 C 1.53006 * 109.47164 * 60.00075 * 10 8 7 12 12 C 1.52997 * 109.47127 * 59.99836 * 11 10 8 13 13 C 1.53000 * 109.47060 * 300.00449 * 12 11 10 14 14 C 1.52996 * 109.47328 * 60.00126 * 13 12 11 15 15 H 1.08992 * 109.47554 * 59.99639 * 14 13 12 16 16 C 1.52997 * 109.46975 * 180.02562 * 14 13 12 17 17 N 1.46499 * 109.47391 * 294.99824 * 16 14 13 18 18 C 1.36939 * 120.00451 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99755 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00077 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00077 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99966 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46780 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46818 * 120.00543 * 22 20 18 25 25 H 1.48492 * 109.47327 * 240.00112 * 22 20 18 26 26 C 1.41499 * 106.97814 * 0.26210 * 4 3 2 27 27 C 1.35065 * 124.88395 * 180.02562 * 2 1 3 28 28 Cl 1.73611 * 126.39990 * 0.02562 * 27 2 1 29 29 H 1.08997 * 109.47110 * 90.02337 * 1 2 3 30 30 H 1.08996 * 109.47334 * 210.02934 * 1 2 3 31 31 H 1.09003 * 109.46657 * 330.02294 * 1 2 3 32 32 H 0.96995 * 119.99934 * 0.02562 * 7 5 4 33 33 H 1.09001 * 109.47375 * 180.02562 * 10 8 7 34 34 H 1.09000 * 109.47140 * 300.00127 * 10 8 7 35 35 H 1.08998 * 109.46505 * 299.99708 * 11 10 8 36 36 H 1.08996 * 109.46884 * 180.02562 * 11 10 8 37 37 H 1.09002 * 109.47153 * 180.02562 * 12 11 10 38 38 H 1.09001 * 109.46832 * 60.00321 * 12 11 10 39 39 H 1.09004 * 109.46724 * 180.02562 * 13 12 11 40 40 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 41 41 H 1.09004 * 109.47610 * 54.99797 * 16 14 13 42 42 H 1.09001 * 109.47532 * 174.99616 * 16 14 13 43 43 H 0.97002 * 119.99938 * 0.02562 * 17 16 14 44 44 H 0.97000 * 120.00085 * 179.97438 * 21 20 18 45 45 H 1.08000 * 127.25882 * 179.70753 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1998 1.0537 0.0000 4 6 3.4742 0.7176 -0.0006 5 6 4.6268 1.6414 -0.0002 6 8 5.7595 1.2002 -0.0013 7 7 4.4226 2.9737 0.0013 8 6 5.5657 3.8899 0.0011 9 1 6.3763 3.4597 0.5893 10 6 6.0409 4.1122 -1.4362 11 6 4.9031 4.7161 -2.2619 12 6 4.4840 6.0545 -1.6505 13 6 4.0089 5.8322 -0.2132 14 6 5.1467 5.2284 0.6124 15 1 5.9971 5.9100 0.6122 16 6 4.6713 5.0055 2.0495 17 7 4.3828 6.2987 2.6746 18 6 3.9403 6.3498 3.9695 19 1 3.8035 5.4367 4.5298 20 6 3.6675 7.5751 4.5619 21 7 3.8337 8.6878 3.8788 22 14 3.0631 7.6448 6.3281 23 1 2.9597 6.2662 6.8705 24 1 4.0210 8.4286 7.1485 25 1 1.7286 8.2948 6.3693 26 6 3.5286 -0.6963 -0.0071 27 6 2.2374 -1.1080 -0.0005 28 17 1.6804 -2.7523 -0.0019 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3634 -0.8897 0.5143 31 1 -0.3633 0.8902 0.5135 32 1 3.5188 3.3258 0.0025 33 1 6.8917 4.7935 -1.4363 34 1 6.3394 3.1586 -1.8717 35 1 4.0526 4.0343 -2.2617 36 1 5.2415 4.8740 -3.2859 37 1 3.6731 6.4845 -2.2385 38 1 5.3345 6.7362 -1.6507 39 1 3.7099 6.7857 0.2221 40 1 3.1583 5.1505 -0.2130 41 1 3.7679 4.3956 2.0430 42 1 5.4505 4.4945 2.6149 43 1 4.5053 7.1188 2.1712 44 1 3.6427 9.5441 4.2927 45 1 4.4126 -1.3166 -0.0137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322347652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:20 Heat of formation + Delta-G solvation = 36.207977 kcal Electronic energy + Delta-G solvation = -27673.075100 eV Core-core repulsion = 23753.018664 eV Total energy + Delta-G solvation = -3920.056436 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.01738 -40.10692 -38.01124 -37.30366 -34.61438 -33.94138 -33.51911 -31.88510 -30.89045 -29.88645 -29.43649 -27.70201 -25.21476 -23.73070 -22.92505 -22.05025 -21.85957 -20.78466 -20.28969 -18.84232 -18.44399 -17.16908 -16.84022 -16.73337 -15.62985 -15.28663 -14.91026 -14.65457 -14.50015 -14.39323 -14.00857 -13.92310 -13.59082 -13.31813 -13.21500 -13.07681 -13.02494 -12.66665 -12.46819 -12.08805 -12.04317 -11.92547 -11.62011 -11.36573 -11.11297 -10.87249 -10.86183 -10.68504 -10.31237 -10.15424 -10.06404 -9.93170 -9.80874 -9.59353 -9.50768 -9.33324 -8.88434 -8.78796 -6.87962 -5.74283 -3.02006 1.10183 1.25408 1.65559 2.16213 3.25072 3.36697 3.44467 3.50500 3.52557 3.94717 4.57879 4.60892 4.64173 4.81886 4.88782 4.94315 4.95134 4.98047 5.10061 5.30407 5.33010 5.39381 5.60458 5.66212 5.68671 5.73663 5.81307 5.88240 5.94478 6.08549 6.11571 6.20276 6.21276 6.29495 6.32990 6.43205 6.55079 6.63307 6.73268 6.86273 6.93717 7.35619 7.69311 7.73824 8.26641 8.45112 9.56409 10.14695 10.49713 11.48763 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009899 B = 0.003096 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.970732 B = 9042.520426 C =10830.093629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.273 5.273 3 N -0.235 5.235 4 C -0.003 4.003 5 C 0.604 3.396 6 O -0.533 6.533 7 N -0.699 5.699 8 C 0.154 3.846 9 H 0.091 0.909 10 C -0.128 4.128 11 C -0.116 4.116 12 C -0.120 4.120 13 C -0.111 4.111 14 C -0.101 4.101 15 H 0.087 0.913 16 C 0.159 3.841 17 N -0.731 5.731 18 C -0.235 4.235 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.151 4.151 27 C 0.046 3.954 28 Cl 0.001 6.999 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.407 0.593 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.019 0.981 42 H 0.018 0.982 43 H 0.384 0.616 44 H 0.254 0.746 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.420 -19.107 -14.717 24.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.064 5.064 3 N -0.072 5.072 4 C -0.163 4.163 5 C 0.388 3.612 6 O -0.408 6.408 7 N -0.350 5.350 8 C 0.050 3.950 9 H 0.109 0.891 10 C -0.167 4.167 11 C -0.154 4.154 12 C -0.158 4.158 13 C -0.149 4.149 14 C -0.120 4.120 15 H 0.105 0.895 16 C 0.031 3.969 17 N -0.375 5.375 18 C -0.367 4.367 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.180 4.180 27 C -0.104 4.104 28 Cl 0.029 6.971 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.244 0.756 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.218 0.782 44 H 0.064 0.936 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.549 -18.687 -14.540 24.319 hybrid contribution -0.530 -0.380 0.904 1.115 sum -6.080 -19.067 -13.637 24.217 Atomic orbital electron populations 1.22324 0.72486 1.06200 1.05056 1.45483 1.08181 1.01568 1.51177 1.73741 1.03138 1.11853 1.18497 1.21913 0.90973 0.93701 1.09702 1.16739 0.86198 0.81699 0.76590 1.90790 1.22189 1.77183 1.50685 1.45968 1.11126 1.04806 1.73150 1.21035 0.88399 0.89291 0.96316 0.89140 1.21910 0.98393 1.01167 0.95204 1.21497 0.98435 0.97064 0.98397 1.21581 1.00891 0.96854 0.96440 1.21536 0.97229 1.02076 0.94025 1.21624 0.99495 0.94841 0.96068 0.89503 1.20655 0.96841 0.89745 0.89618 1.42369 1.80204 1.02311 1.12620 1.19272 1.35808 0.92515 0.89062 0.91289 1.24712 1.02679 0.95384 0.98281 1.69664 1.55550 0.96805 1.36276 0.86139 0.78057 0.77263 0.84893 1.20624 1.21895 1.21939 1.21459 0.95349 0.93919 1.07272 1.21905 0.91166 0.83655 1.13677 1.98403 1.89681 1.11653 1.97352 0.89093 0.88440 0.87509 0.75566 0.90868 0.91641 0.92287 0.92491 0.92322 0.91885 0.90270 0.92631 0.96336 0.96395 0.78218 0.93638 0.80922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.44 11.14 59.85 0.67 1.10 16 2 N -0.27 -2.72 3.70 -64.87 -0.24 -2.96 16 3 N -0.24 -2.93 11.66 33.42 0.39 -2.54 16 4 C 0.00 -0.04 7.13 -82.77 -0.59 -0.63 16 5 C 0.60 9.08 7.79 -12.39 -0.10 8.98 16 6 O -0.53 -9.24 16.59 5.31 0.09 -9.16 16 7 N -0.70 -9.79 3.61 -54.79 -0.20 -9.98 16 8 C 0.15 2.18 2.23 -67.93 -0.15 2.03 16 9 H 0.09 1.41 7.58 -51.93 -0.39 1.01 16 10 C -0.13 -1.58 5.60 -26.73 -0.15 -1.72 16 11 C -0.12 -1.33 5.77 -26.73 -0.15 -1.48 16 12 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 13 C -0.11 -1.64 4.90 -26.73 -0.13 -1.78 16 14 C -0.10 -1.60 2.02 -90.62 -0.18 -1.78 16 15 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 16 C 0.16 3.22 5.42 -4.04 -0.02 3.20 16 17 N -0.73 -18.36 5.33 -59.91 -0.32 -18.68 16 18 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 22 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 C -0.15 -1.78 10.80 -39.31 -0.42 -2.20 16 27 C 0.05 0.46 7.44 -17.10 -0.13 0.33 16 28 Cl 0.00 0.01 28.67 -51.86 -1.49 -1.48 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 0.37 7.72 -51.93 -0.40 -0.03 16 31 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.41 5.56 6.39 -40.82 -0.26 5.30 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.69 7.60 -51.93 -0.39 0.30 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.38 7.18 -51.93 -0.37 1.01 16 40 H 0.06 0.80 6.51 -51.93 -0.34 0.46 16 41 H 0.02 0.39 7.61 -51.93 -0.39 -0.01 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.38 10.02 6.85 -40.82 -0.28 9.74 16 44 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 380.05 15.07 5.73 5.73 Total: -1.00 -33.04 380.05 -8.71 -41.76 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -6.61 Total: 10.09 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -1.77 Total: -2.89 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: 0.36 Total: -61.63 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.49 Total: -1.48 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.04 -8.71 -41.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322347652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.966 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds