Wall clock time and date at job start Sat Apr 11 2020 06:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28461 * 124.88904 * 2 1 4 4 C 1.31800 * 110.11366 * 180.02562 * 3 2 1 5 5 C 1.47715 * 126.51131 * 180.02562 * 4 3 2 6 6 O 1.21565 * 120.00218 * 180.02562 * 5 4 3 7 7 N 1.34779 * 119.99842 * 0.02562 * 5 4 3 8 8 C 1.46500 * 119.99793 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.47092 * 325.00176 * 8 7 5 10 10 C 1.52997 * 109.47204 * 85.00113 * 8 7 5 11 11 C 1.53006 * 109.47164 * 60.00075 * 10 8 7 12 12 C 1.52997 * 109.47127 * 59.99836 * 11 10 8 13 13 C 1.53000 * 109.47060 * 300.00449 * 12 11 10 14 14 C 1.52996 * 109.47328 * 60.00126 * 13 12 11 15 15 H 1.08992 * 109.47554 * 59.99639 * 14 13 12 16 16 C 1.52997 * 109.46975 * 180.02562 * 14 13 12 17 17 N 1.46499 * 109.47391 * 294.99824 * 16 14 13 18 18 C 1.36939 * 120.00451 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99755 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00077 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00077 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99966 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46780 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46818 * 120.00543 * 22 20 18 25 25 H 1.48492 * 109.47327 * 240.00112 * 22 20 18 26 26 C 1.41499 * 106.97814 * 0.26210 * 4 3 2 27 27 C 1.35065 * 124.88395 * 180.02562 * 2 1 3 28 28 Cl 1.73611 * 126.39990 * 0.02562 * 27 2 1 29 29 H 1.08997 * 109.47110 * 90.02337 * 1 2 3 30 30 H 1.08996 * 109.47334 * 210.02934 * 1 2 3 31 31 H 1.09003 * 109.46657 * 330.02294 * 1 2 3 32 32 H 0.96995 * 119.99934 * 0.02562 * 7 5 4 33 33 H 1.09001 * 109.47375 * 180.02562 * 10 8 7 34 34 H 1.09000 * 109.47140 * 300.00127 * 10 8 7 35 35 H 1.08998 * 109.46505 * 299.99708 * 11 10 8 36 36 H 1.08996 * 109.46884 * 180.02562 * 11 10 8 37 37 H 1.09002 * 109.47153 * 180.02562 * 12 11 10 38 38 H 1.09001 * 109.46832 * 60.00321 * 12 11 10 39 39 H 1.09004 * 109.46724 * 180.02562 * 13 12 11 40 40 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 41 41 H 1.09004 * 109.47610 * 54.99797 * 16 14 13 42 42 H 1.09001 * 109.47532 * 174.99616 * 16 14 13 43 43 H 0.97002 * 119.99938 * 0.02562 * 17 16 14 44 44 H 0.97000 * 120.00085 * 179.97438 * 21 20 18 45 45 H 1.08000 * 127.25882 * 179.70753 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1998 1.0537 0.0000 4 6 3.4742 0.7176 -0.0006 5 6 4.6268 1.6414 -0.0002 6 8 5.7595 1.2002 -0.0013 7 7 4.4226 2.9737 0.0013 8 6 5.5657 3.8899 0.0011 9 1 6.3763 3.4597 0.5893 10 6 6.0409 4.1122 -1.4362 11 6 4.9031 4.7161 -2.2619 12 6 4.4840 6.0545 -1.6505 13 6 4.0089 5.8322 -0.2132 14 6 5.1467 5.2284 0.6124 15 1 5.9971 5.9100 0.6122 16 6 4.6713 5.0055 2.0495 17 7 4.3828 6.2987 2.6746 18 6 3.9403 6.3498 3.9695 19 1 3.8035 5.4367 4.5298 20 6 3.6675 7.5751 4.5619 21 7 3.8337 8.6878 3.8788 22 14 3.0631 7.6448 6.3281 23 1 2.9597 6.2662 6.8705 24 1 4.0210 8.4286 7.1485 25 1 1.7286 8.2948 6.3693 26 6 3.5286 -0.6963 -0.0071 27 6 2.2374 -1.1080 -0.0005 28 17 1.6804 -2.7523 -0.0019 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3634 -0.8897 0.5143 31 1 -0.3633 0.8902 0.5135 32 1 3.5188 3.3258 0.0025 33 1 6.8917 4.7935 -1.4363 34 1 6.3394 3.1586 -1.8717 35 1 4.0526 4.0343 -2.2617 36 1 5.2415 4.8740 -3.2859 37 1 3.6731 6.4845 -2.2385 38 1 5.3345 6.7362 -1.6507 39 1 3.7099 6.7857 0.2221 40 1 3.1583 5.1505 -0.2130 41 1 3.7679 4.3956 2.0430 42 1 5.4505 4.4945 2.6149 43 1 4.5053 7.1188 2.1712 44 1 3.6427 9.5441 4.2927 45 1 4.4126 -1.3166 -0.0137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322347652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:20 Heat of formation + Delta-G solvation = 15.274143 kcal Electronic energy + Delta-G solvation = -27673.982859 eV Core-core repulsion = 23753.018664 eV Total energy + Delta-G solvation = -3920.964195 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.86504 -41.29723 -39.23616 -38.00478 -36.45912 -34.87661 -34.47833 -33.71069 -31.77958 -31.23755 -30.84248 -28.47186 -26.93106 -24.71941 -24.68174 -23.19624 -22.70018 -22.04910 -21.46845 -19.98640 -19.51043 -19.01961 -17.72178 -17.63200 -16.86802 -16.67681 -16.30580 -16.03183 -15.61142 -15.30775 -15.16186 -15.14506 -15.01334 -14.84115 -14.61184 -14.04260 -13.86192 -13.56528 -13.43048 -13.18726 -13.09169 -12.97735 -12.86998 -12.80263 -12.73057 -12.57856 -12.09190 -11.96050 -11.91461 -11.85063 -11.43449 -11.28050 -11.17441 -11.02334 -10.85474 -10.38680 -10.15480 -9.97822 -8.98690 -7.95387 -5.23496 0.33158 0.35013 0.74982 1.46158 1.46644 1.47004 1.57016 2.17954 2.26841 2.55128 3.11522 3.37835 3.58163 3.79384 3.82160 3.85877 4.09604 4.10590 4.24942 4.26408 4.28829 4.42283 4.43153 4.49182 4.52301 4.58491 4.59228 4.68055 4.75501 4.92264 5.02717 5.06040 5.10068 5.18657 5.28089 5.32108 5.34748 5.36502 5.45697 5.47671 5.53082 5.61204 6.27167 6.36204 6.65861 7.11633 7.34125 8.09151 8.34748 9.28046 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009899 B = 0.003096 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.970732 B = 9042.520426 C =10830.093629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.265 5.265 3 N -0.247 5.247 4 C -0.029 4.029 5 C 0.604 3.396 6 O -0.563 6.563 7 N -0.694 5.694 8 C 0.160 3.840 9 H 0.075 0.925 10 C -0.122 4.122 11 C -0.109 4.109 12 C -0.113 4.113 13 C -0.105 4.105 14 C -0.087 4.087 15 H 0.084 0.916 16 C 0.162 3.838 17 N -0.739 5.739 18 C -0.245 4.245 19 H 0.068 0.932 20 C -0.071 4.071 21 N -0.966 5.966 22 Si 0.971 3.029 23 H -0.271 1.271 24 H -0.292 1.292 25 H -0.290 1.290 26 C -0.166 4.166 27 C 0.052 3.948 28 Cl 0.027 6.973 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.410 0.590 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.058 0.942 41 H 0.017 0.983 42 H 0.006 0.994 43 H 0.377 0.623 44 H 0.252 0.748 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.695 -20.360 -15.554 26.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.057 5.057 3 N -0.085 5.085 4 C -0.187 4.187 5 C 0.389 3.611 6 O -0.441 6.441 7 N -0.345 5.345 8 C 0.055 3.945 9 H 0.093 0.907 10 C -0.160 4.160 11 C -0.147 4.147 12 C -0.150 4.150 13 C -0.143 4.143 14 C -0.107 4.107 15 H 0.102 0.898 16 C 0.035 3.965 17 N -0.382 5.382 18 C -0.377 4.377 19 H 0.086 0.914 20 C -0.264 4.264 21 N -0.616 5.616 22 Si 0.800 3.200 23 H -0.195 1.195 24 H -0.219 1.219 25 H -0.217 1.217 26 C -0.195 4.195 27 C -0.099 4.099 28 Cl 0.055 6.945 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.130 0.870 32 H 0.247 0.753 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.024 0.976 43 H 0.210 0.790 44 H 0.061 0.939 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.841 -19.967 -15.389 26.120 hybrid contribution -0.218 -0.105 1.169 1.193 sum -7.059 -20.072 -14.220 25.591 Atomic orbital electron populations 1.22766 0.69959 1.07519 1.06940 1.45902 1.09516 1.00977 1.49293 1.73682 1.02939 1.12982 1.18933 1.21728 0.90977 0.94147 1.11854 1.16958 0.86386 0.81921 0.75871 1.90761 1.23449 1.77656 1.52209 1.45924 1.11076 1.04684 1.72849 1.20930 0.88008 0.88039 0.97530 0.90713 1.21862 0.99182 1.01446 0.93528 1.21451 0.97896 0.96178 0.99133 1.21527 1.01439 0.97601 0.94456 1.21448 0.96862 1.00391 0.95570 1.21460 0.99698 0.95957 0.93550 0.89755 1.20731 0.96277 0.87559 0.91940 1.42512 1.80014 1.03676 1.11993 1.19601 1.35225 0.92564 0.90322 0.91382 1.25499 1.03505 0.95099 1.02275 1.69806 1.56833 0.97123 1.37873 0.85118 0.77238 0.77527 0.80137 1.19514 1.21942 1.21709 1.21604 0.96517 0.93384 1.07995 1.21957 0.90771 0.84839 1.12334 1.98415 1.89323 1.09545 1.97179 0.86912 0.86397 0.87003 0.75307 0.89742 0.91900 0.92447 0.90397 0.91009 0.91531 0.93128 0.92361 0.96462 0.97639 0.79024 0.93932 0.80484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 11.14 127.77 1.42 1.99 16 2 N -0.27 -4.87 3.70 -359.16 -1.33 -6.20 16 3 N -0.25 -5.98 11.66 -48.18 -0.56 -6.55 16 4 C -0.03 -0.78 7.13 42.46 0.30 -0.48 16 5 C 0.60 18.43 7.79 86.75 0.68 19.10 16 6 O -0.56 -19.98 16.59 -3.92 -0.07 -20.04 16 7 N -0.69 -19.56 3.61 -445.53 -1.61 -21.17 16 8 C 0.16 4.53 2.23 44.99 0.10 4.63 16 9 H 0.07 2.38 7.58 -2.39 -0.02 2.37 16 10 C -0.12 -2.85 5.60 30.60 0.17 -2.67 16 11 C -0.11 -2.26 5.77 30.60 0.18 -2.08 16 12 C -0.11 -2.57 5.92 30.59 0.18 -2.39 16 13 C -0.10 -3.09 4.90 30.59 0.15 -2.94 16 14 C -0.09 -2.79 2.02 -10.80 -0.02 -2.82 16 15 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 16 C 0.16 6.70 5.42 86.38 0.47 7.16 16 17 N -0.74 -37.97 5.33 -343.45 -1.83 -39.80 16 18 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 19 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 20 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 21 N -0.97 -59.04 13.06 21.65 0.28 -58.75 16 22 Si 0.97 46.69 29.55 68.60 2.03 48.71 16 23 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 26 C -0.17 -3.84 10.80 22.44 0.24 -3.60 16 27 C 0.05 0.97 7.44 83.57 0.62 1.59 16 28 Cl 0.03 0.36 28.67 -2.72 -0.08 0.28 16 29 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.12 0.54 7.72 -2.39 -0.02 0.52 16 31 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.41 11.18 6.39 -92.71 -0.59 10.59 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 1.23 7.60 -2.39 -0.02 1.21 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.05 1.79 7.18 -2.39 -0.02 1.78 16 40 H 0.06 1.67 6.51 -2.39 -0.02 1.65 16 41 H 0.02 0.73 7.61 -2.39 -0.02 0.71 16 42 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.38 20.24 6.85 -92.71 -0.64 19.60 16 44 H 0.25 14.86 8.31 -92.71 -0.77 14.08 16 45 H 0.18 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -71.37 380.05 2.43 -68.94 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: -0.20 Total: 33.91 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 5.80 Total: 0.67 kcal Atomic # 7 Polarization: -127.42 SS G_CDS: -5.05 Total: -132.46 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.07 Total: -20.04 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -0.08 Total: 0.28 kcal Total: -71.37 2.43 -68.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322347652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.210 kcal (2) G-P(sol) polarization free energy of solvation -71.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds