Wall clock time and date at job start Sat Apr 11 2020 06:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28457 * 124.88593 * 2 1 4 4 C 1.31803 * 110.11370 * 179.97438 * 3 2 1 5 5 C 1.47710 * 126.51634 * 179.97438 * 4 3 2 6 6 O 1.21567 * 120.00414 * 180.02562 * 5 4 3 7 7 N 1.34780 * 119.99732 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99848 * 179.97438 * 7 5 4 9 9 H 1.08993 * 109.47429 * 35.00394 * 8 7 5 10 10 C 1.53003 * 109.47155 * 274.99884 * 8 7 5 11 11 C 1.52994 * 109.46945 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47099 * 60.00218 * 11 10 8 13 13 C 1.52996 * 109.47324 * 299.99749 * 12 11 10 14 14 C 1.53004 * 109.46660 * 155.00228 * 8 7 5 15 15 H 1.08999 * 109.47217 * 60.00344 * 14 8 7 16 16 C 1.52996 * 109.47336 * 299.99745 * 14 8 7 17 17 N 1.46498 * 109.47059 * 175.00083 * 16 14 8 18 18 C 1.36943 * 119.99752 * 179.72430 * 17 16 14 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 16 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 16 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47213 * 60.00246 * 22 20 18 24 24 H 1.48502 * 109.47317 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47081 * 299.99875 * 22 20 18 26 26 C 1.41507 * 106.97540 * 0.26242 * 4 3 2 27 27 C 1.35068 * 124.88252 * 179.97438 * 2 1 3 28 28 Cl 1.73604 * 126.40097 * 0.02655 * 27 2 1 29 29 H 1.09000 * 109.46349 * 89.97935 * 1 2 3 30 30 H 1.08998 * 109.47352 * 209.97320 * 1 2 3 31 31 H 1.09000 * 109.47316 * 329.98357 * 1 2 3 32 32 H 0.97000 * 120.00104 * 0.02562 * 7 5 4 33 33 H 1.08995 * 109.46731 * 60.00496 * 10 8 7 34 34 H 1.08994 * 109.46929 * 300.00247 * 10 8 7 35 35 H 1.09000 * 109.47864 * 300.00473 * 11 10 8 36 36 H 1.09001 * 109.47328 * 180.02562 * 11 10 8 37 37 H 1.09005 * 109.47165 * 179.97438 * 12 11 10 38 38 H 1.08999 * 109.46900 * 60.00147 * 12 11 10 39 39 H 1.09000 * 109.47017 * 300.00357 * 13 12 11 40 40 H 1.08995 * 109.47011 * 179.97438 * 13 12 11 41 41 H 1.09004 * 109.47066 * 55.00351 * 16 14 8 42 42 H 1.08994 * 109.46974 * 295.00498 * 16 14 8 43 43 H 0.97001 * 120.00384 * 0.02562 * 17 16 14 44 44 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 45 45 H 1.07998 * 127.26010 * 179.70574 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0537 0.0000 4 6 3.4742 0.7177 0.0006 5 6 4.6268 1.6414 0.0002 6 8 5.7595 1.2001 0.0003 7 7 4.4226 2.9737 -0.0002 8 6 5.5657 3.8899 0.0000 9 1 6.3759 3.4602 -0.5890 10 6 6.0417 4.1112 1.4372 11 6 7.2351 5.0685 1.4374 12 6 6.8150 6.4074 0.8274 13 6 6.3390 6.1862 -0.6097 14 6 5.1461 5.2288 -0.6102 15 1 4.3359 5.6586 -0.0211 16 6 4.6701 5.0076 -2.0473 17 7 4.1571 6.2675 -2.5911 18 6 3.6780 6.3151 -3.8731 19 1 3.6743 5.4229 -4.4817 20 6 3.1972 7.5101 -4.3904 21 7 3.2022 8.5975 -3.6489 22 14 2.5431 7.5749 -6.1389 23 1 1.3980 6.6391 -6.2741 24 1 2.0934 8.9560 -6.4483 25 1 3.6183 7.1815 -7.0846 26 6 3.5286 -0.6963 -0.0053 27 6 2.2375 -1.1080 0.0005 28 17 1.6804 -2.7522 0.0006 29 1 -0.3632 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3634 0.8898 0.5141 32 1 3.5188 3.3258 0.0000 33 1 6.3405 3.1574 1.8718 34 1 5.2315 4.5409 2.0261 35 1 8.0455 4.6393 0.8483 36 1 7.5745 5.2259 2.4612 37 1 7.6651 7.0897 0.8280 38 1 6.0047 6.8367 1.4166 39 1 7.1494 5.7568 -1.1988 40 1 6.0394 7.1399 -1.0440 41 1 3.8782 4.2587 -2.0565 42 1 5.5046 4.6616 -2.6571 43 1 4.1607 7.0689 -2.0447 44 1 2.8659 9.4325 -4.0102 45 1 4.4126 -1.3167 -0.0109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322347653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:23 Heat of formation + Delta-G solvation = 33.449462 kcal Electronic energy + Delta-G solvation = -27372.276937 eV Core-core repulsion = 23452.100883 eV Total energy + Delta-G solvation = -3920.176054 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.00572 -39.90794 -38.04603 -37.29534 -34.57862 -34.12641 -33.81003 -31.85716 -30.88509 -29.67840 -29.35442 -27.62545 -25.20979 -23.77373 -22.93876 -21.88013 -21.67835 -20.58111 -20.20158 -19.60842 -18.26079 -17.16758 -16.82373 -16.63819 -16.06325 -14.98848 -14.74356 -14.63340 -14.43259 -14.38319 -14.14299 -13.75847 -13.65415 -13.38788 -13.19400 -13.07062 -12.97551 -12.64149 -12.48822 -12.32425 -12.07765 -11.78607 -11.48664 -11.11527 -11.04433 -10.85351 -10.84804 -10.67063 -10.43109 -10.22706 -10.09656 -9.95727 -9.84468 -9.60295 -9.49687 -9.32332 -8.87877 -8.77777 -6.87716 -5.73799 -3.01557 1.11117 1.26575 1.65967 2.17363 3.22518 3.36219 3.45608 3.49896 3.51008 3.95111 4.57583 4.60934 4.67189 4.82550 4.87163 4.95399 4.97144 5.05291 5.16395 5.30117 5.33389 5.41839 5.60848 5.63792 5.68738 5.72750 5.80111 5.94373 5.95050 6.10534 6.16344 6.20516 6.25998 6.30351 6.33841 6.44629 6.59874 6.61660 6.74688 6.85361 6.96351 7.36390 7.68895 7.73054 8.25626 8.45663 9.56718 10.15055 10.50199 11.49128 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008739 B = 0.003192 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.276182 B = 8770.350569 C =11358.322941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.273 5.273 3 N -0.234 5.234 4 C -0.004 4.004 5 C 0.606 3.394 6 O -0.533 6.533 7 N -0.704 5.704 8 C 0.154 3.846 9 H 0.090 0.910 10 C -0.126 4.126 11 C -0.114 4.114 12 C -0.122 4.122 13 C -0.107 4.107 14 C -0.100 4.100 15 H 0.075 0.925 16 C 0.158 3.842 17 N -0.730 5.730 18 C -0.237 4.237 19 H 0.068 0.932 20 C -0.014 4.014 21 N -0.935 5.935 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.151 4.151 27 C 0.046 3.954 28 Cl 0.001 6.999 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.408 0.592 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.020 0.980 42 H 0.018 0.982 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.206 -18.583 13.638 23.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.064 5.064 3 N -0.071 5.071 4 C -0.164 4.164 5 C 0.389 3.611 6 O -0.408 6.408 7 N -0.354 5.354 8 C 0.050 3.950 9 H 0.108 0.892 10 C -0.165 4.165 11 C -0.152 4.152 12 C -0.159 4.159 13 C -0.145 4.145 14 C -0.119 4.119 15 H 0.093 0.907 16 C 0.030 3.970 17 N -0.375 5.375 18 C -0.368 4.368 19 H 0.086 0.914 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.737 3.263 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.180 4.180 27 C -0.104 4.104 28 Cl 0.029 6.971 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.244 0.756 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.218 0.782 44 H 0.065 0.935 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.339 -18.156 13.460 22.722 hybrid contribution -0.656 -0.422 -0.899 1.190 sum -2.994 -18.578 12.562 22.626 Atomic orbital electron populations 1.22329 0.72451 1.05955 1.05328 1.45494 1.08208 1.01565 1.51113 1.73753 1.03123 1.11830 1.18375 1.21898 0.90972 0.93681 1.09830 1.16728 0.86212 0.81638 0.76502 1.90791 1.22204 1.77163 1.50639 1.45948 1.11104 1.04980 1.73335 1.21075 0.88338 0.89175 0.96456 0.89177 1.21900 0.98383 0.99729 0.96495 1.21484 0.97565 0.95588 1.00600 1.21602 1.00805 0.96647 0.96856 1.21485 0.96890 1.00301 0.95791 1.21582 0.98709 0.93600 0.97993 0.90656 1.20673 0.95831 0.90164 0.90315 1.42349 1.74739 1.06548 1.13820 1.19184 1.32971 0.94825 0.89827 0.91406 1.24708 1.02315 0.95730 0.98228 1.69647 1.52798 0.99701 1.36196 0.86284 0.78771 0.76480 0.84753 1.21381 1.21711 1.21309 1.21457 0.95351 0.93900 1.07286 1.21905 0.91160 0.83657 1.13707 1.98402 1.89682 1.11650 1.97354 0.88908 0.88484 0.87601 0.75605 0.91691 0.91852 0.91836 0.92165 0.92101 0.92038 0.91988 0.90213 0.96262 0.96369 0.78223 0.93539 0.80919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 11.14 59.85 0.67 1.13 16 2 N -0.27 -2.79 3.70 -64.87 -0.24 -3.03 16 3 N -0.23 -2.99 11.66 33.42 0.39 -2.60 16 4 C 0.00 -0.05 7.13 -82.77 -0.59 -0.65 16 5 C 0.61 9.22 7.79 -12.39 -0.10 9.13 16 6 O -0.53 -9.31 16.59 5.31 0.09 -9.22 16 7 N -0.70 -10.06 4.30 -54.79 -0.24 -10.30 16 8 C 0.15 2.22 1.90 -67.93 -0.13 2.09 16 9 H 0.09 1.44 7.58 -51.93 -0.39 1.04 16 10 C -0.13 -1.59 5.50 -26.73 -0.15 -1.73 16 11 C -0.11 -1.32 5.92 -26.73 -0.16 -1.48 16 12 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 13 C -0.11 -1.64 5.08 -26.76 -0.14 -1.78 16 14 C -0.10 -1.59 1.80 -90.64 -0.16 -1.76 16 15 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 16 C 0.16 3.21 5.57 -4.04 -0.02 3.19 16 17 N -0.73 -18.39 5.33 -59.91 -0.32 -18.71 16 18 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 22 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C -0.15 -1.80 10.80 -39.31 -0.42 -2.22 16 27 C 0.05 0.47 7.44 -17.10 -0.13 0.34 16 28 Cl 0.00 0.01 28.67 -51.86 -1.49 -1.48 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.10 0.36 7.71 -51.93 -0.40 -0.04 16 31 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.41 5.64 8.12 -40.82 -0.33 5.31 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.42 7.18 -51.93 -0.37 1.05 16 41 H 0.02 0.41 7.31 -51.93 -0.38 0.03 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.38 10.04 6.85 -40.82 -0.28 9.76 16 44 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.17 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 384.15 15.07 5.79 5.79 Total: -1.00 -33.08 384.15 -8.82 -41.90 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -6.78 Total: 10.30 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.73 Total: -2.77 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: 0.32 Total: -62.09 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.49 Total: -1.48 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.08 -8.82 -41.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322347653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.346 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds