Wall clock time and date at job start Sat Apr 11 2020 06:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28457 * 124.88593 * 2 1 4 4 C 1.31803 * 110.11370 * 179.97438 * 3 2 1 5 5 C 1.47710 * 126.51634 * 179.97438 * 4 3 2 6 6 O 1.21567 * 120.00414 * 180.02562 * 5 4 3 7 7 N 1.34780 * 119.99732 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99848 * 179.97438 * 7 5 4 9 9 H 1.08993 * 109.47429 * 35.00394 * 8 7 5 10 10 C 1.53003 * 109.47155 * 274.99884 * 8 7 5 11 11 C 1.52994 * 109.46945 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47099 * 60.00218 * 11 10 8 13 13 C 1.52996 * 109.47324 * 299.99749 * 12 11 10 14 14 C 1.53004 * 109.46660 * 155.00228 * 8 7 5 15 15 H 1.08999 * 109.47217 * 60.00344 * 14 8 7 16 16 C 1.52996 * 109.47336 * 299.99745 * 14 8 7 17 17 N 1.46498 * 109.47059 * 175.00083 * 16 14 8 18 18 C 1.36943 * 119.99752 * 179.72430 * 17 16 14 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 16 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 16 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47213 * 60.00246 * 22 20 18 24 24 H 1.48502 * 109.47317 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47081 * 299.99875 * 22 20 18 26 26 C 1.41507 * 106.97540 * 0.26242 * 4 3 2 27 27 C 1.35068 * 124.88252 * 179.97438 * 2 1 3 28 28 Cl 1.73604 * 126.40097 * 0.02655 * 27 2 1 29 29 H 1.09000 * 109.46349 * 89.97935 * 1 2 3 30 30 H 1.08998 * 109.47352 * 209.97320 * 1 2 3 31 31 H 1.09000 * 109.47316 * 329.98357 * 1 2 3 32 32 H 0.97000 * 120.00104 * 0.02562 * 7 5 4 33 33 H 1.08995 * 109.46731 * 60.00496 * 10 8 7 34 34 H 1.08994 * 109.46929 * 300.00247 * 10 8 7 35 35 H 1.09000 * 109.47864 * 300.00473 * 11 10 8 36 36 H 1.09001 * 109.47328 * 180.02562 * 11 10 8 37 37 H 1.09005 * 109.47165 * 179.97438 * 12 11 10 38 38 H 1.08999 * 109.46900 * 60.00147 * 12 11 10 39 39 H 1.09000 * 109.47017 * 300.00357 * 13 12 11 40 40 H 1.08995 * 109.47011 * 179.97438 * 13 12 11 41 41 H 1.09004 * 109.47066 * 55.00351 * 16 14 8 42 42 H 1.08994 * 109.46974 * 295.00498 * 16 14 8 43 43 H 0.97001 * 120.00384 * 0.02562 * 17 16 14 44 44 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 45 45 H 1.07998 * 127.26010 * 179.70574 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0537 0.0000 4 6 3.4742 0.7177 0.0006 5 6 4.6268 1.6414 0.0002 6 8 5.7595 1.2001 0.0003 7 7 4.4226 2.9737 -0.0002 8 6 5.5657 3.8899 0.0000 9 1 6.3759 3.4602 -0.5890 10 6 6.0417 4.1112 1.4372 11 6 7.2351 5.0685 1.4374 12 6 6.8150 6.4074 0.8274 13 6 6.3390 6.1862 -0.6097 14 6 5.1461 5.2288 -0.6102 15 1 4.3359 5.6586 -0.0211 16 6 4.6701 5.0076 -2.0473 17 7 4.1571 6.2675 -2.5911 18 6 3.6780 6.3151 -3.8731 19 1 3.6743 5.4229 -4.4817 20 6 3.1972 7.5101 -4.3904 21 7 3.2022 8.5975 -3.6489 22 14 2.5431 7.5749 -6.1389 23 1 1.3980 6.6391 -6.2741 24 1 2.0934 8.9560 -6.4483 25 1 3.6183 7.1815 -7.0846 26 6 3.5286 -0.6963 -0.0053 27 6 2.2375 -1.1080 0.0005 28 17 1.6804 -2.7522 0.0006 29 1 -0.3632 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3634 0.8898 0.5141 32 1 3.5188 3.3258 0.0000 33 1 6.3405 3.1574 1.8718 34 1 5.2315 4.5409 2.0261 35 1 8.0455 4.6393 0.8483 36 1 7.5745 5.2259 2.4612 37 1 7.6651 7.0897 0.8280 38 1 6.0047 6.8367 1.4166 39 1 7.1494 5.7568 -1.1988 40 1 6.0394 7.1399 -1.0440 41 1 3.8782 4.2587 -2.0565 42 1 5.5046 4.6616 -2.6571 43 1 4.1607 7.0689 -2.0447 44 1 2.8659 9.4325 -4.0102 45 1 4.4126 -1.3167 -0.0109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322347653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:22 Heat of formation + Delta-G solvation = 12.138777 kcal Electronic energy + Delta-G solvation = -27373.201038 eV Core-core repulsion = 23452.100883 eV Total energy + Delta-G solvation = -3921.100155 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.87255 -41.11964 -39.28961 -38.01142 -36.42218 -35.28459 -34.60297 -33.68664 -31.78273 -31.21625 -30.59267 -28.42946 -26.92984 -24.77957 -24.71393 -22.90191 -22.66265 -21.98348 -21.32422 -20.71255 -19.43764 -18.95612 -17.64551 -17.62395 -17.29083 -16.72851 -15.99817 -15.88156 -15.52904 -15.49643 -15.20199 -15.11365 -15.01066 -14.75433 -14.56784 -14.09221 -13.86695 -13.65476 -13.56121 -13.31818 -13.17127 -12.93255 -12.81138 -12.72733 -12.67434 -12.22358 -12.13116 -11.96339 -11.91661 -11.85238 -11.60942 -11.37171 -11.18259 -11.05601 -10.88433 -10.39685 -10.16256 -9.99382 -8.98641 -7.94944 -5.23185 0.31777 0.34384 0.74035 1.45522 1.46096 1.48913 1.55198 2.14000 2.24695 2.55446 3.10309 3.37900 3.55126 3.75406 3.82261 3.94725 4.09163 4.11838 4.24802 4.26837 4.29303 4.38299 4.42859 4.46921 4.51246 4.54811 4.57996 4.58899 4.86319 4.89970 5.05009 5.06300 5.13325 5.16462 5.26549 5.31082 5.32578 5.35808 5.44937 5.47331 5.50339 5.61644 6.27206 6.34218 6.64465 7.08906 7.34221 8.09143 8.35029 9.28067 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008739 B = 0.003192 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.276182 B = 8770.350569 C =11358.322941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.266 5.266 3 N -0.247 5.247 4 C -0.029 4.029 5 C 0.605 3.395 6 O -0.562 6.562 7 N -0.701 5.701 8 C 0.161 3.839 9 H 0.074 0.926 10 C -0.119 4.119 11 C -0.109 4.109 12 C -0.114 4.114 13 C -0.104 4.104 14 C -0.085 4.085 15 H 0.077 0.923 16 C 0.160 3.840 17 N -0.738 5.738 18 C -0.248 4.248 19 H 0.068 0.932 20 C -0.070 4.070 21 N -0.966 5.966 22 Si 0.971 3.029 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.281 1.281 26 C -0.165 4.165 27 C 0.052 3.948 28 Cl 0.028 6.972 29 H 0.105 0.895 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.411 0.589 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.017 0.983 42 H 0.007 0.993 43 H 0.377 0.623 44 H 0.252 0.748 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.077 -19.793 14.355 24.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.057 5.057 3 N -0.086 5.086 4 C -0.188 4.188 5 C 0.390 3.610 6 O -0.439 6.439 7 N -0.350 5.350 8 C 0.056 3.944 9 H 0.092 0.908 10 C -0.157 4.157 11 C -0.147 4.147 12 C -0.151 4.151 13 C -0.142 4.142 14 C -0.104 4.104 15 H 0.095 0.905 16 C 0.034 3.966 17 N -0.381 5.381 18 C -0.380 4.380 19 H 0.086 0.914 20 C -0.263 4.263 21 N -0.616 5.616 22 Si 0.800 3.200 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.194 4.194 27 C -0.099 4.099 28 Cl 0.056 6.944 29 H 0.123 0.877 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.247 0.753 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.035 0.965 42 H 0.025 0.975 43 H 0.210 0.790 44 H 0.061 0.939 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -3.219 -19.393 14.185 24.242 hybrid contribution -0.466 -0.161 -1.132 1.235 sum -3.685 -19.554 13.053 23.797 Atomic orbital electron populations 1.22766 0.69964 1.07733 1.06720 1.45909 1.09532 1.00995 1.49283 1.73694 1.02981 1.13011 1.18889 1.21725 0.90954 0.94164 1.11923 1.16944 0.86410 0.81842 0.75785 1.90761 1.23415 1.77620 1.52123 1.45932 1.11132 1.04920 1.73064 1.20968 0.87893 0.87887 0.97628 0.90769 1.21842 0.99137 1.00040 0.94711 1.21471 0.96933 0.94419 1.01902 1.21546 1.01422 0.97664 0.94502 1.21426 0.96361 0.98473 0.97971 1.21419 0.98990 0.94876 0.95109 0.90481 1.20747 0.95037 0.88163 0.92699 1.42483 1.74728 1.07801 1.13100 1.19534 1.32539 0.94892 0.91050 0.91430 1.25497 1.03147 0.95449 1.02160 1.69796 1.53929 1.00032 1.37840 0.85259 0.78300 0.76350 0.80133 1.20466 1.21794 1.20691 1.21610 0.96532 0.93332 1.07960 1.21966 0.90769 0.84849 1.12320 1.98414 1.89322 1.09484 1.97177 0.87656 0.86028 0.86641 0.75320 0.91909 0.90866 0.91941 0.89765 0.90785 0.91505 0.92440 0.92998 0.96477 0.97537 0.79034 0.93906 0.80386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 11.14 127.77 1.42 2.04 16 2 N -0.27 -5.06 3.70 -359.15 -1.33 -6.38 16 3 N -0.25 -6.19 11.66 -48.18 -0.56 -6.75 16 4 C -0.03 -0.81 7.13 42.46 0.30 -0.51 16 5 C 0.61 18.76 7.79 86.75 0.68 19.43 16 6 O -0.56 -20.06 16.59 -3.93 -0.07 -20.13 16 7 N -0.70 -20.25 4.30 -445.53 -1.92 -22.17 16 8 C 0.16 4.64 1.90 44.99 0.09 4.72 16 9 H 0.07 2.41 7.58 -2.39 -0.02 2.39 16 10 C -0.12 -2.83 5.50 30.59 0.17 -2.66 16 11 C -0.11 -2.31 5.92 30.59 0.18 -2.13 16 12 C -0.11 -2.69 5.92 30.59 0.18 -2.51 16 13 C -0.10 -3.23 5.08 30.58 0.16 -3.08 16 14 C -0.08 -2.74 1.80 -10.81 -0.02 -2.76 16 15 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 16 C 0.16 6.69 5.57 86.38 0.48 7.17 16 17 N -0.74 -38.00 5.33 -343.46 -1.83 -39.83 16 18 C -0.25 -14.20 9.99 84.03 0.84 -13.36 16 19 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 20 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 21 N -0.97 -58.97 13.06 21.65 0.28 -58.68 16 22 Si 0.97 46.60 29.55 68.60 2.03 48.63 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 24 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 25 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 26 C -0.17 -3.88 10.80 22.45 0.24 -3.64 16 27 C 0.05 0.99 7.44 83.57 0.62 1.61 16 28 Cl 0.03 0.37 28.67 -2.72 -0.08 0.30 16 29 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.12 0.54 7.71 -2.39 -0.02 0.52 16 31 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.41 11.45 8.12 -92.71 -0.75 10.69 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.05 1.90 7.18 -2.39 -0.02 1.89 16 41 H 0.02 0.73 7.31 -2.38 -0.02 0.72 16 42 H 0.01 0.29 8.14 -2.39 -0.02 0.28 16 43 H 0.38 20.27 6.85 -92.71 -0.63 19.63 16 44 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 45 H 0.18 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -71.40 384.15 1.97 -69.43 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: -0.37 Total: 34.84 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 5.81 Total: 0.75 kcal Atomic # 7 Polarization: -128.46 SS G_CDS: -5.35 Total: -133.82 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.07 Total: -20.13 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -0.08 Total: 0.30 kcal Total: -71.40 1.97 -69.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322347653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.570 kcal (2) G-P(sol) polarization free energy of solvation -71.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds