Wall clock time and date at job start Sat Apr 11 2020 06:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00005 * 2 1 4 4 C 1.53004 * 109.47094 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47009 * 64.99686 * 4 3 2 6 6 C 1.42899 * 114.00048 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47326 * 180.02562 * 6 5 4 8 8 N 1.46502 * 109.47238 * 65.00102 * 7 6 5 9 9 C 1.46507 * 119.99954 * 270.00217 * 8 7 6 10 10 C 1.34771 * 120.00116 * 89.99815 * 8 7 6 11 11 O 1.21363 * 120.00028 * 3.62306 * 10 8 7 12 12 C 1.49310 * 120.00470 * 183.62314 * 10 8 7 13 13 O 1.21411 * 119.99403 * 354.17226 * 12 10 8 14 14 N 1.34776 * 120.00227 * 174.16588 * 12 10 8 15 15 C 1.40299 * 119.99814 * 180.02562 * 14 12 10 16 16 C 1.40726 * 126.09959 * 359.97379 * 15 14 12 17 17 N 1.30875 * 108.37308 * 179.74094 * 16 15 14 18 18 N 1.40062 * 108.43818 * 0.44333 * 17 16 15 19 19 C 1.37294 * 126.05765 * 179.81461 * 18 17 16 20 20 H 1.08005 * 119.99834 * 179.69078 * 19 18 17 21 21 C 1.39004 * 120.00158 * 359.96670 * 19 18 17 22 22 N 1.31282 * 119.99929 * 359.72235 * 21 19 18 23 23 Si 1.86796 * 120.00250 * 179.72392 * 21 19 18 24 24 H 1.48501 * 109.47013 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47111 * 120.00212 * 23 21 19 26 26 H 1.48498 * 109.47019 * 239.99889 * 23 21 19 27 27 C 1.35787 * 126.09861 * 180.02562 * 15 14 12 28 28 H 1.09004 * 109.47331 * 300.00241 * 1 2 3 29 29 H 1.09002 * 109.46819 * 60.00089 * 1 2 3 30 30 H 1.09008 * 109.47273 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47122 * 59.99783 * 3 2 1 32 32 H 1.09002 * 109.47070 * 299.99428 * 3 2 1 33 33 H 1.09001 * 109.47380 * 305.00163 * 4 3 2 34 34 H 1.08998 * 109.46919 * 184.99919 * 4 3 2 35 35 H 1.09001 * 109.47287 * 60.00410 * 6 5 4 36 36 H 1.08997 * 109.47342 * 299.99955 * 6 5 4 37 37 H 1.09003 * 109.47443 * 305.00575 * 7 6 5 38 38 H 1.08992 * 109.47742 * 184.99935 * 7 6 5 39 39 H 1.08992 * 109.47385 * 263.98340 * 9 8 7 40 40 H 1.08998 * 109.47093 * 23.99112 * 9 8 7 41 41 H 1.09002 * 109.47058 * 143.98779 * 9 8 7 42 42 H 0.96998 * 120.00131 * 0.02562 * 14 12 10 43 43 H 1.08001 * 125.81129 * 0.02703 * 16 15 14 44 44 H 0.97001 * 120.00179 * 179.97438 * 22 21 19 45 45 H 1.08003 * 126.24978 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9658 0.5791 -1.2201 6 6 5.3822 0.4196 -1.3220 7 6 5.7267 -0.2341 -2.6617 8 7 5.3589 0.6692 -3.7548 9 6 4.0193 0.5989 -4.3439 10 6 6.2527 1.5650 -4.2186 11 8 7.3827 1.5794 -3.7762 12 6 5.8528 2.5396 -5.2766 13 8 4.7577 2.4580 -5.7944 14 7 6.7074 3.5100 -5.6567 15 6 6.3313 4.4262 -6.6505 16 6 5.1009 4.4506 -7.3329 17 7 5.1179 5.4492 -8.1787 18 7 6.3576 6.0934 -8.0784 19 6 6.7619 7.1855 -8.8057 20 1 7.7425 7.6086 -8.6447 21 6 5.9071 7.7501 -9.7452 22 7 4.7151 7.2358 -9.9410 23 14 6.4542 9.2406 -10.7293 24 1 7.8305 9.6235 -10.3236 25 1 6.4391 8.9107 -12.1770 26 1 5.5282 10.3722 -10.4698 27 6 7.0902 5.4469 -7.1261 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8508 0.5685 0.8427 34 1 3.9784 2.1765 0.0902 35 1 5.7363 -0.2122 -0.5074 36 1 5.8632 1.3957 -1.2602 37 1 5.1757 -1.1692 -2.7622 38 1 6.7969 -0.4369 -2.7026 39 1 4.0474 -0.0248 -5.2372 40 1 3.3268 0.1674 -3.6211 41 1 3.6869 1.6019 -4.6114 42 1 7.5824 3.5751 -5.2431 43 1 4.2802 3.7651 -7.1809 44 1 4.1185 7.6301 -10.5963 45 1 8.0907 5.7006 -6.8084 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323756925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:27 Heat of formation + Delta-G solvation = -78.083239 kcal Electronic energy + Delta-G solvation = -29216.651405 eV Core-core repulsion = 24850.929765 eV Total energy + Delta-G solvation = -4365.721640 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.10972 -41.26672 -39.66930 -39.22322 -38.23256 -36.98810 -35.81532 -34.92960 -32.30109 -32.10110 -30.29696 -29.83478 -27.85519 -27.17810 -26.96482 -25.58661 -23.53801 -23.44787 -22.81230 -21.36424 -20.88481 -19.41090 -18.71374 -18.16957 -17.79049 -17.60368 -17.44184 -17.29418 -16.75554 -16.60696 -16.39789 -16.18221 -15.88536 -15.62557 -15.55085 -15.04922 -15.02334 -14.77780 -14.41608 -13.97938 -13.69552 -13.52611 -13.48398 -13.22449 -13.05038 -12.94074 -12.93303 -12.78944 -12.69454 -12.29830 -12.20552 -12.02683 -11.95445 -11.87530 -11.07291 -10.85951 -10.66302 -10.61060 -10.25513 -10.13290 -9.82011 -8.60283 -8.48588 -6.25886 0.29844 1.27875 1.29975 1.42159 1.60074 1.72098 2.03634 2.11174 2.47941 2.53722 2.68086 2.86072 2.86447 3.07958 3.45555 3.97446 4.08389 4.14826 4.20166 4.34175 4.40402 4.43176 4.45271 4.48961 4.53429 4.55983 4.59497 4.65508 4.72535 4.78772 4.84088 4.87826 4.96866 4.99163 5.04424 5.26148 5.30985 5.44986 5.90947 5.94746 6.15995 6.22086 6.28119 6.41096 6.67822 6.76876 7.09974 7.42095 7.63972 8.50829 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017074 B = 0.002106 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.526028 B =13295.154646 C =14231.562964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.060 3.940 4 C 0.060 3.940 5 O -0.395 6.395 6 C 0.048 3.952 7 C 0.112 3.888 8 N -0.572 5.572 9 C 0.075 3.925 10 C 0.517 3.483 11 O -0.543 6.543 12 C 0.484 3.516 13 O -0.531 6.531 14 N -0.584 5.584 15 C -0.055 4.055 16 C -0.047 4.047 17 N -0.308 5.308 18 N -0.164 5.164 19 C -0.352 4.352 20 H 0.141 0.859 21 C -0.006 4.006 22 N -0.821 5.821 23 Si 1.019 2.981 24 H -0.242 1.242 25 H -0.272 1.272 26 H -0.272 1.272 27 C -0.075 4.075 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.060 0.940 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.422 0.578 43 H 0.177 0.823 44 H 0.278 0.722 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.460 -12.308 19.593 23.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C -0.017 4.017 4 C -0.016 4.016 5 O -0.315 6.315 6 C -0.030 4.030 7 C -0.009 4.009 8 N -0.304 5.304 9 C -0.067 4.067 10 C 0.300 3.700 11 O -0.422 6.422 12 C 0.267 3.733 13 O -0.409 6.409 14 N -0.229 5.229 15 C -0.161 4.161 16 C -0.223 4.223 17 N -0.139 5.139 18 N 0.068 4.932 19 C -0.484 4.484 20 H 0.159 0.841 21 C -0.218 4.218 22 N -0.449 5.449 23 Si 0.838 3.162 24 H -0.164 1.164 25 H -0.198 1.198 26 H -0.197 1.197 27 C -0.226 4.226 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.059 0.941 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.259 0.741 43 H 0.194 0.806 44 H 0.087 0.913 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -2.523 -11.964 18.324 22.029 hybrid contribution 0.651 0.455 0.440 0.908 sum -1.872 -11.508 18.764 22.091 Atomic orbital electron populations 1.22898 0.79769 1.03708 1.00663 1.87892 1.21157 1.28281 1.95572 1.22666 0.92269 0.85110 1.01615 1.22643 0.93552 0.98136 0.87301 1.87923 1.22189 1.82314 1.39092 1.22968 0.81688 1.00271 0.98044 1.21912 1.03099 0.92728 0.83164 1.47703 1.14216 1.33726 1.34758 1.22326 0.81298 1.04884 0.98158 1.19750 0.85296 0.82169 0.82827 1.90710 1.19847 1.71712 1.59935 1.20268 0.85110 0.82963 0.84999 1.90574 1.21623 1.73107 1.55577 1.42112 1.18516 1.26650 1.35603 1.17291 0.97145 0.99227 1.02427 1.24261 0.98781 1.00357 0.98855 1.78154 1.01672 1.10065 1.24042 1.44839 1.08259 1.18445 1.21676 1.20680 1.03837 1.05096 1.18738 0.84143 1.26880 0.94617 1.02331 0.97956 1.70381 1.07323 1.38151 1.29016 0.84528 0.79690 0.74998 0.76952 1.16435 1.19753 1.19705 1.21993 1.00555 0.99491 1.00585 0.92806 0.93928 0.88697 0.89731 0.93158 0.91494 0.91052 0.89529 0.94063 0.86992 0.87407 0.92172 0.89340 0.89668 0.74079 0.80642 0.91265 0.79609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -7.80 10.67 -144.34 -1.54 -9.34 16 3 C 0.06 0.94 6.32 71.98 0.45 1.40 16 4 C 0.06 0.95 6.32 71.98 0.45 1.41 16 5 O -0.40 -8.01 9.25 -144.34 -1.33 -9.34 16 6 C 0.05 0.82 6.28 71.98 0.45 1.27 16 7 C 0.11 2.04 5.81 86.38 0.50 2.54 16 8 N -0.57 -14.30 2.84 -848.52 -2.41 -16.71 16 9 C 0.08 1.86 9.32 127.77 1.19 3.05 16 10 C 0.52 15.77 7.73 87.23 0.67 16.44 16 11 O -0.54 -17.25 16.04 -3.29 -0.05 -17.31 16 12 C 0.48 17.58 7.74 87.23 0.68 18.26 16 13 O -0.53 -21.33 10.28 -3.44 -0.04 -21.37 16 14 N -0.58 -21.82 5.45 -305.31 -1.66 -23.48 16 15 C -0.05 -2.52 6.90 37.82 0.26 -2.26 16 16 C -0.05 -2.50 10.85 85.44 0.93 -1.57 16 17 N -0.31 -18.24 10.39 -56.43 -0.59 -18.82 16 18 N -0.16 -9.04 3.73 -189.97 -0.71 -9.75 16 19 C -0.35 -18.50 10.25 84.02 0.86 -17.64 16 20 H 0.14 6.41 7.83 -2.91 -0.02 6.39 16 21 C -0.01 -0.30 5.50 84.96 0.47 0.17 16 22 N -0.82 -46.73 11.81 21.66 0.26 -46.47 16 23 Si 1.02 38.18 29.55 68.60 2.03 40.21 16 24 H -0.24 -8.13 7.11 99.48 0.71 -7.42 16 25 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 26 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 27 C -0.08 -3.51 11.50 83.41 0.96 -2.55 16 28 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.11 1.60 8.07 -2.39 -0.02 1.58 16 38 H 0.11 1.87 7.37 -2.39 -0.02 1.86 16 39 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 1.91 7.24 -2.39 -0.02 1.89 16 41 H 0.09 2.58 5.35 -2.50 -0.01 2.57 16 42 H 0.42 13.33 8.31 -92.71 -0.77 12.56 16 43 H 0.18 9.11 5.92 -2.91 -0.02 9.10 16 44 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 45 H 0.19 6.94 8.06 -2.91 -0.02 6.92 16 Total: -1.00 -74.25 384.73 3.34 -70.92 By element: Atomic # 1 Polarization: 39.12 SS G_CDS: 0.26 Total: 39.38 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 9.13 Total: 22.08 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -5.11 Total: -115.24 kcal Atomic # 8 Polarization: -54.39 SS G_CDS: -2.96 Total: -57.35 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Total: -74.25 3.34 -70.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323756925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.166 kcal (2) G-P(sol) polarization free energy of solvation -74.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds