Wall clock time and date at job start Sat Apr 11 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28466 * 124.88031 * 2 1 4 4 C 1.31801 * 110.10788 * 179.97438 * 3 2 1 5 5 C 1.47710 * 126.50918 * 179.97438 * 4 3 2 6 6 O 1.21571 * 119.99964 * 180.02562 * 5 4 3 7 7 N 1.34769 * 120.00448 * 0.02894 * 5 4 3 8 8 C 1.46502 * 120.00629 * 184.72458 * 7 5 4 9 9 H 1.08998 * 109.46689 * 326.20764 * 8 7 5 10 10 C 1.52998 * 109.47543 * 206.20210 * 8 7 5 11 11 N 1.46497 * 109.46613 * 55.00159 * 10 8 7 12 12 C 1.36944 * 119.99279 * 179.97438 * 11 10 8 13 13 H 1.07995 * 120.00231 * 359.97438 * 12 11 10 14 14 C 1.38818 * 119.99530 * 180.02562 * 12 11 10 15 15 N 1.31618 * 120.00242 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99791 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47395 * 359.97438 * 16 14 12 18 18 H 1.48509 * 109.47200 * 119.99716 * 16 14 12 19 19 H 1.48497 * 109.47166 * 239.99395 * 16 14 12 20 20 C 1.53002 * 109.46935 * 86.20112 * 8 7 5 21 21 C 1.54263 * 110.03476 * 180.53668 * 20 8 7 22 22 C 1.54890 * 104.19653 * 217.10659 * 21 20 8 23 23 C 1.54882 * 102.74768 * 37.94051 * 22 21 20 24 24 C 1.53871 * 110.03260 * 63.36832 * 20 8 7 25 25 C 1.41502 * 106.97871 * 0.26631 * 4 3 2 26 26 C 1.35056 * 124.88436 * 179.97438 * 2 1 3 27 27 Cl 1.73606 * 126.40364 * 0.02562 * 26 2 1 28 28 H 1.09001 * 109.47253 * 90.02012 * 1 2 3 29 29 H 1.09000 * 109.47049 * 210.02413 * 1 2 3 30 30 H 1.09001 * 109.47595 * 330.02433 * 1 2 3 31 31 H 0.97003 * 119.99978 * 5.00318 * 7 5 4 32 32 H 1.09001 * 109.46610 * 174.99668 * 10 8 7 33 33 H 1.08995 * 109.47031 * 295.00009 * 10 8 7 34 34 H 0.96999 * 120.00702 * 359.97438 * 11 10 8 35 35 H 0.96995 * 120.00052 * 180.02562 * 15 14 12 36 36 H 1.09004 * 110.02002 * 301.97991 * 20 8 7 37 37 H 1.08998 * 110.48552 * 335.78640 * 21 20 8 38 38 H 1.09001 * 110.48542 * 98.42413 * 21 20 8 39 39 H 1.08996 * 110.75362 * 279.62401 * 22 21 20 40 40 H 1.08998 * 110.91038 * 156.33198 * 22 21 20 41 41 H 1.09003 * 110.48440 * 203.37661 * 23 22 21 42 42 H 1.09006 * 110.59568 * 80.79382 * 23 22 21 43 43 H 1.08996 * 110.03507 * 238.57109 * 24 20 8 44 44 H 1.08999 * 110.03331 * 0.02562 * 24 20 8 45 45 H 1.07997 * 127.26097 * 179.71468 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0539 0.0000 4 6 3.4741 0.7178 0.0006 5 6 4.6266 1.6417 0.0002 6 8 5.7594 1.2005 0.0003 7 7 4.4224 2.9738 -0.0002 8 6 5.5612 3.8896 -0.1050 9 1 6.4229 3.4573 0.4036 10 6 5.2022 5.2266 0.5463 11 7 4.7631 4.9960 1.9247 12 6 4.3889 6.0536 2.7101 13 1 4.4179 7.0576 2.3134 14 6 3.9734 5.8351 4.0165 15 7 3.9385 4.6115 4.5001 16 14 3.4636 7.2778 5.0880 17 1 3.5925 8.5388 4.3145 18 1 2.0528 7.1016 5.5170 19 1 4.3407 7.3398 6.2847 20 6 5.8999 4.1153 -1.5799 21 6 7.1068 5.0679 -1.7051 22 6 6.7821 5.9308 -2.9497 23 6 5.2538 6.1489 -2.8252 24 6 4.7217 4.8026 -2.2921 25 6 3.5286 -0.6962 -0.0054 26 6 2.2374 -1.1079 0.0005 27 17 1.6805 -2.7522 0.0006 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 3.5217 3.3265 0.0730 32 1 6.0772 5.8766 0.5476 33 1 4.3982 5.7007 -0.0167 34 1 4.7374 4.0942 2.2812 35 1 3.6478 4.4588 5.4128 36 1 6.1232 3.1633 -2.0614 37 1 7.1915 5.6951 -0.8177 38 1 8.0249 4.5018 -1.8623 39 1 7.0221 5.3922 -3.8664 40 1 7.3124 6.8824 -2.9125 41 1 4.8196 6.3717 -3.7999 42 1 5.0371 6.9511 -2.1197 43 1 4.3738 4.1845 -3.1197 44 1 3.9088 4.9757 -1.5869 45 1 4.4127 -1.3164 -0.0109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324485053.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:32 Heat of formation + Delta-G solvation = 20.609980 kcal Electronic energy + Delta-G solvation = -27782.643237 eV Core-core repulsion = 23861.910421 eV Total energy + Delta-G solvation = -3920.732816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.85273 -41.07602 -39.27390 -38.00966 -36.73760 -35.25741 -34.63507 -33.00581 -31.74175 -30.97566 -29.54500 -28.53160 -27.77379 -25.37798 -24.37798 -23.05685 -22.68094 -21.64555 -21.10858 -19.99222 -19.43143 -18.91941 -17.74656 -17.61930 -17.27112 -16.85532 -16.31504 -16.27925 -15.61091 -15.40522 -15.20387 -15.08701 -15.02385 -14.94327 -14.33349 -13.94067 -13.83185 -13.56977 -13.51500 -13.15786 -13.07596 -12.80814 -12.79582 -12.69909 -12.27884 -12.05400 -11.95750 -11.89994 -11.85777 -11.80406 -11.70013 -11.38665 -11.31677 -11.13032 -10.90289 -10.37926 -10.15062 -9.95361 -8.98126 -7.92809 -5.22533 0.33328 0.34927 0.75298 1.47574 1.47783 1.48877 1.58716 2.17881 2.27933 2.56679 3.11954 3.41486 3.63762 3.71630 3.74705 3.90787 4.04909 4.12952 4.21160 4.26657 4.29372 4.37361 4.44954 4.53107 4.57384 4.60974 4.71869 4.74313 4.87754 4.93368 4.94458 5.04529 5.10614 5.15748 5.19315 5.31670 5.33605 5.38686 5.50964 5.51856 5.58110 5.60440 6.27296 6.37375 6.67230 7.12459 7.34259 8.08130 8.31918 9.30692 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007667 B = 0.003898 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3650.905634 B = 7181.935799 C = 9806.757540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.265 5.265 3 N -0.246 5.246 4 C -0.029 4.029 5 C 0.602 3.398 6 O -0.568 6.568 7 N -0.690 5.690 8 C 0.151 3.849 9 H 0.063 0.937 10 C 0.149 3.851 11 N -0.744 5.744 12 C -0.240 4.240 13 H 0.080 0.920 14 C -0.074 4.074 15 N -0.970 5.970 16 Si 0.972 3.028 17 H -0.263 1.263 18 H -0.294 1.294 19 H -0.297 1.297 20 C -0.089 4.089 21 C -0.124 4.124 22 C -0.115 4.115 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.168 4.168 26 C 0.053 3.947 27 Cl 0.030 6.970 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.109 0.891 31 H 0.409 0.591 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.372 0.628 35 H 0.249 0.751 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.405 -9.323 -17.236 20.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.057 5.057 3 N -0.084 5.084 4 C -0.187 4.187 5 C 0.387 3.613 6 O -0.446 6.446 7 N -0.339 5.339 8 C 0.046 3.954 9 H 0.081 0.919 10 C 0.022 3.978 11 N -0.386 5.386 12 C -0.371 4.371 13 H 0.098 0.902 14 C -0.267 4.267 15 N -0.621 5.621 16 Si 0.802 3.198 17 H -0.187 1.187 18 H -0.221 1.221 19 H -0.225 1.225 20 C -0.109 4.109 21 C -0.162 4.162 22 C -0.152 4.152 23 C -0.159 4.159 24 C -0.154 4.154 25 C -0.197 4.197 26 C -0.098 4.098 27 Cl 0.058 6.942 28 H 0.133 0.867 29 H 0.137 0.863 30 H 0.128 0.872 31 H 0.245 0.755 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.204 0.796 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.534 -8.641 -17.236 20.358 hybrid contribution -0.206 -0.609 1.367 1.511 sum -6.740 -9.249 -15.869 19.566 Atomic orbital electron populations 1.22769 0.69921 1.07454 1.07000 1.45918 1.09551 1.00938 1.49286 1.73704 1.02965 1.12947 1.18786 1.21702 0.90974 0.94198 1.11803 1.17021 0.86482 0.82025 0.75732 1.90738 1.23567 1.77705 1.52570 1.45748 1.11398 1.04702 1.72045 1.21191 0.88389 0.89188 0.96629 0.91864 1.21183 0.97890 0.93984 0.84705 1.42571 1.79638 1.06535 1.09905 1.19674 1.34720 0.89088 0.93662 0.90176 1.25555 1.03462 0.98743 0.98893 1.69860 1.55632 1.20786 1.15818 0.85085 0.76838 0.79309 0.78589 1.18704 1.22136 1.22454 1.22027 0.96665 0.99346 0.92857 1.22509 0.96743 0.97492 0.99452 1.22437 0.95724 0.99763 0.97284 1.22357 0.95895 0.96459 1.01173 1.22188 0.97079 0.96821 0.99333 1.21592 0.96639 0.93246 1.08196 1.21921 0.90651 0.84884 1.12316 1.98405 1.89282 1.09329 1.97187 0.86657 0.86307 0.87249 0.75490 0.94042 0.93985 0.79646 0.94242 0.91637 0.91475 0.91266 0.90741 0.90562 0.90436 0.92032 0.91634 0.92307 0.80534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 11.14 127.77 1.42 2.27 16 2 N -0.27 -6.20 3.70 -359.15 -1.33 -7.53 16 3 N -0.25 -7.48 11.67 -48.18 -0.56 -8.04 16 4 C -0.03 -0.97 7.13 42.46 0.30 -0.66 16 5 C 0.60 23.03 7.80 86.75 0.68 23.71 16 6 O -0.57 -24.40 16.54 -3.94 -0.07 -24.47 16 7 N -0.69 -25.10 4.05 -445.54 -1.80 -26.91 16 8 C 0.15 5.39 1.94 44.99 0.09 5.48 16 9 H 0.06 2.61 7.47 -2.39 -0.02 2.60 16 10 C 0.15 5.88 5.26 86.38 0.45 6.33 16 11 N -0.74 -38.06 5.43 -343.46 -1.87 -39.93 16 12 C -0.24 -13.32 9.99 84.03 0.84 -12.48 16 13 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 14 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 15 N -0.97 -60.58 13.06 21.65 0.28 -60.29 16 16 Si 0.97 46.31 29.55 68.60 2.03 48.34 16 17 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 18 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 19 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 20 C -0.09 -2.53 2.95 -10.07 -0.03 -2.56 16 21 C -0.12 -3.10 6.19 31.67 0.20 -2.91 16 22 C -0.11 -2.29 6.91 31.88 0.22 -2.07 16 23 C -0.12 -2.56 6.83 31.67 0.22 -2.35 16 24 C -0.12 -2.91 5.62 31.32 0.18 -2.73 16 25 C -0.17 -4.82 10.80 22.45 0.24 -4.58 16 26 C 0.05 1.24 7.44 83.57 0.62 1.87 16 27 Cl 0.03 0.50 28.67 -2.72 -0.08 0.42 16 28 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.12 0.98 7.71 -2.39 -0.02 0.97 16 30 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.41 14.89 8.28 -92.71 -0.77 14.12 16 32 H 0.04 1.63 6.29 -2.39 -0.02 1.61 16 33 H 0.04 1.59 6.12 -2.39 -0.01 1.58 16 34 H 0.37 20.99 7.33 -92.71 -0.68 20.31 16 35 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 36 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.07 1.84 5.85 -2.39 -0.01 1.82 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 43 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.06 1.62 5.86 -2.39 -0.01 1.61 16 45 H 0.18 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -72.30 381.90 2.09 -70.21 By element: Atomic # 1 Polarization: 43.12 SS G_CDS: -0.41 Total: 42.71 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 5.89 Total: 5.49 kcal Atomic # 7 Polarization: -137.42 SS G_CDS: -5.28 Total: -142.70 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.07 Total: -24.47 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Atomic # 17 Polarization: 0.50 SS G_CDS: -0.08 Total: 0.42 kcal Total: -72.30 2.09 -70.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324485053.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.818 kcal (2) G-P(sol) polarization free energy of solvation -72.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds