Wall clock time and date at job start Sat Apr 11 2020 06:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28455 * 124.88456 * 2 1 4 4 C 1.31799 * 110.11492 * 180.02562 * 3 2 1 5 5 C 1.47705 * 126.51710 * 180.02562 * 4 3 2 6 6 O 1.21572 * 120.00233 * 180.02562 * 5 4 3 7 7 N 1.34782 * 120.00008 * 0.02818 * 5 4 3 8 8 C 1.46501 * 120.00012 * 185.30162 * 7 5 4 9 9 H 1.08997 * 109.47225 * 355.21344 * 8 7 5 10 10 C 1.53001 * 109.46876 * 115.20781 * 8 7 5 11 11 N 1.46494 * 109.47450 * 305.00137 * 10 8 7 12 12 C 1.36935 * 120.00258 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99877 * 359.97438 * 12 11 10 14 14 C 1.38812 * 120.00300 * 180.02562 * 12 11 10 15 15 N 1.31623 * 120.00136 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 119.99826 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46734 * 90.00572 * 16 14 12 18 18 H 1.48499 * 109.47025 * 210.00258 * 16 14 12 19 19 H 1.48503 * 109.47285 * 330.00469 * 16 14 12 20 20 C 1.52996 * 109.47127 * 235.20720 * 8 7 5 21 21 C 1.54257 * 110.03287 * 180.58861 * 20 8 7 22 22 C 1.54889 * 104.19864 * 217.10804 * 21 20 8 23 23 C 1.54888 * 102.74965 * 37.94112 * 22 21 20 24 24 C 1.53883 * 110.03008 * 63.42211 * 20 8 7 25 25 C 1.41503 * 106.97164 * 0.26329 * 4 3 2 26 26 C 1.35062 * 124.88200 * 180.02562 * 2 1 3 27 27 Cl 1.73602 * 126.40294 * 0.03280 * 26 2 1 28 28 H 1.08994 * 109.47698 * 90.01995 * 1 2 3 29 29 H 1.09001 * 109.46975 * 210.02085 * 1 2 3 30 30 H 1.09004 * 109.46679 * 330.01289 * 1 2 3 31 31 H 0.96996 * 119.99723 * 5.29852 * 7 5 4 32 32 H 1.09002 * 109.47297 * 184.99808 * 10 8 7 33 33 H 1.09008 * 109.47058 * 65.00077 * 10 8 7 34 34 H 0.97004 * 120.00068 * 359.97438 * 11 10 8 35 35 H 0.96999 * 119.99721 * 179.97438 * 15 14 12 36 36 H 1.08998 * 110.01630 * 302.03285 * 20 8 7 37 37 H 1.09003 * 110.48909 * 335.78152 * 21 20 8 38 38 H 1.09000 * 110.49066 * 98.42923 * 21 20 8 39 39 H 1.09000 * 110.75703 * 279.63033 * 22 21 20 40 40 H 1.08999 * 110.76124 * 156.25552 * 22 21 20 41 41 H 1.08998 * 110.49172 * 203.38416 * 23 22 21 42 42 H 1.09003 * 110.59917 * 80.78882 * 23 22 21 43 43 H 1.08997 * 110.02954 * 238.56990 * 24 20 8 44 44 H 1.09000 * 110.02932 * 359.95221 * 24 20 8 45 45 H 1.08008 * 127.25960 * 179.70343 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0537 0.0000 4 6 3.4741 0.7177 -0.0006 5 6 4.6267 1.6415 -0.0002 6 8 5.7594 1.2002 -0.0013 7 7 4.4225 2.9738 0.0013 8 6 5.5602 3.8893 -0.1156 9 1 6.4885 3.3182 -0.1077 10 6 5.4533 4.6707 -1.4267 11 7 5.3408 3.7328 -2.5464 12 6 5.2332 4.2053 -3.8271 13 1 5.2307 5.2694 -4.0117 14 6 5.1260 3.3166 -4.8881 15 7 5.0220 3.7707 -6.1191 16 14 5.1295 1.4761 -4.5687 17 1 3.7361 1.0075 -4.3594 18 1 5.7184 0.7723 -5.7362 19 1 5.9369 1.1855 -3.3567 20 6 5.5521 4.8658 1.0622 21 6 6.7372 5.8461 0.9441 22 6 7.2058 6.0537 2.4057 23 6 7.0405 4.6420 3.0214 24 6 5.7449 4.1002 2.3830 25 6 3.5285 -0.6962 -0.0072 26 6 2.2374 -1.1080 -0.0005 27 17 1.6804 -2.7522 -0.0020 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5137 31 1 3.5223 3.3263 0.0798 32 1 6.3435 5.2863 -1.5564 33 1 4.5707 5.3097 -1.3979 34 1 5.3434 2.7770 -2.3806 35 1 4.9476 3.1497 -6.8604 36 1 4.6117 5.4166 1.0838 37 1 7.5364 5.4082 0.3460 38 1 6.4091 6.7910 0.5109 39 1 6.5683 6.7750 2.9170 40 1 8.2488 6.3686 2.4361 41 1 6.9336 4.7080 4.1041 42 1 7.8882 4.0083 2.7605 43 1 4.8985 4.2801 3.0458 44 1 5.8433 3.0328 2.1849 45 1 4.4126 -1.3166 -0.0138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324485070.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:36 Heat of formation + Delta-G solvation = 42.369453 kcal Electronic energy + Delta-G solvation = -28048.121475 eV Core-core repulsion = 24128.332220 eV Total energy + Delta-G solvation = -3919.789255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -42.88500 -39.78243 -38.01914 -37.18874 -35.41043 -33.83243 -33.54811 -31.43745 -30.68854 -29.94103 -28.63413 -27.70794 -26.40268 -23.89987 -22.55533 -21.72780 -21.20694 -20.50968 -20.08652 -19.60938 -18.16004 -17.57784 -16.71433 -16.62673 -16.17211 -15.37778 -15.17879 -14.53957 -14.37326 -14.35100 -14.29928 -13.80189 -13.60930 -13.30500 -13.18004 -12.98682 -12.88449 -12.58449 -12.33605 -12.18990 -11.97349 -11.52475 -11.47513 -11.08170 -11.04792 -10.97957 -10.93347 -10.80089 -10.62692 -10.47006 -10.34186 -10.05200 -9.90826 -9.54035 -9.37628 -9.19963 -8.84325 -8.68234 -7.15895 -5.71678 -3.05737 1.21426 1.38499 1.79397 2.27974 3.31489 3.44075 3.51186 3.53590 3.56301 4.04884 4.60054 4.66780 4.68038 4.71064 4.74266 4.77673 4.94432 5.01670 5.16391 5.23966 5.45124 5.50319 5.51340 5.54905 5.59644 5.69533 5.72453 5.86706 5.87758 5.88610 5.97357 6.06125 6.10342 6.16196 6.22876 6.31263 6.36915 6.42313 6.48863 6.64607 6.88775 7.47370 7.80560 8.04890 8.40081 8.47999 9.27932 10.01146 10.21086 11.46654 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007589 B = 0.004794 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3688.573419 B = 5838.789883 C = 8611.487499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.274 5.274 3 N -0.234 5.234 4 C -0.002 4.002 5 C 0.605 3.395 6 O -0.529 6.529 7 N -0.698 5.698 8 C 0.133 3.867 9 H 0.103 0.897 10 C 0.147 3.853 11 N -0.753 5.753 12 C -0.240 4.240 13 H 0.091 0.909 14 C 0.007 3.993 15 N -0.935 5.935 16 Si 0.873 3.127 17 H -0.287 1.287 18 H -0.290 1.290 19 H -0.270 1.270 20 C -0.095 4.095 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.124 4.124 24 C -0.118 4.118 25 C -0.151 4.151 26 C 0.046 3.954 27 Cl 0.001 6.999 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.405 0.595 32 H 0.041 0.959 33 H 0.029 0.971 34 H 0.363 0.637 35 H 0.258 0.742 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.845 -5.815 20.835 23.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.065 5.065 3 N -0.071 5.071 4 C -0.162 4.162 5 C 0.389 3.611 6 O -0.403 6.403 7 N -0.348 5.348 8 C 0.028 3.972 9 H 0.121 0.879 10 C 0.019 3.981 11 N -0.399 5.399 12 C -0.370 4.370 13 H 0.108 0.892 14 C -0.189 4.189 15 N -0.583 5.583 16 Si 0.703 3.297 17 H -0.214 1.214 18 H -0.216 1.216 19 H -0.196 1.196 20 C -0.115 4.115 21 C -0.155 4.155 22 C -0.161 4.161 23 C -0.162 4.162 24 C -0.156 4.156 25 C -0.180 4.180 26 C -0.104 4.104 27 Cl 0.029 6.971 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.240 0.760 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.196 0.804 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.928 -5.201 20.617 22.692 hybrid contribution -0.311 -2.151 -0.102 2.176 sum -8.239 -7.352 20.514 23.298 Atomic orbital electron populations 1.22300 0.72591 1.05791 1.05259 1.45453 1.08124 1.01589 1.51345 1.73689 1.03094 1.11786 1.18522 1.21898 0.91001 0.93729 1.09554 1.16728 0.86251 0.81798 0.76350 1.90807 1.22148 1.76991 1.50383 1.45674 1.11262 1.04929 1.72931 1.21618 0.90407 0.90363 0.94770 0.87864 1.21036 0.99201 0.92365 0.85513 1.42664 1.90278 1.03899 1.03016 1.19045 1.42143 0.94213 0.81580 0.89162 1.24604 1.02062 0.97071 0.95124 1.69700 1.57416 1.33399 0.97794 0.86686 0.77927 0.87548 0.77538 1.21409 1.21611 1.19596 1.22050 0.99599 0.95861 0.94017 1.22406 0.97513 0.98939 0.96624 1.22491 1.00796 0.96827 0.96024 1.22355 0.98062 0.96555 0.99225 1.22169 0.97358 1.00351 0.95702 1.21487 0.95446 0.94003 1.07069 1.21863 0.91126 0.83609 1.13802 1.98394 1.89668 1.11704 1.97369 0.88997 0.88516 0.87727 0.76005 0.94158 0.95343 0.80422 0.93171 0.90605 0.90807 0.91173 0.91776 0.91744 0.92220 0.91639 0.92283 0.91449 0.80902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 11.14 59.85 0.67 1.24 16 2 N -0.27 -3.34 3.70 -64.87 -0.24 -3.58 16 3 N -0.23 -3.45 11.67 33.42 0.39 -3.06 16 4 C 0.00 -0.03 7.13 -82.77 -0.59 -0.62 16 5 C 0.61 10.94 7.07 -12.39 -0.09 10.86 16 6 O -0.53 -10.96 16.27 5.30 0.09 -10.88 16 7 N -0.70 -11.28 4.01 -54.79 -0.22 -11.50 16 8 C 0.13 2.14 1.70 -67.93 -0.12 2.03 16 9 H 0.10 1.89 6.91 -51.93 -0.36 1.53 16 10 C 0.15 2.87 5.61 -4.04 -0.02 2.84 16 11 N -0.75 -18.86 5.24 -59.91 -0.31 -19.17 16 12 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 13 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 14 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 15 N -0.93 -30.28 13.97 55.49 0.78 -29.50 16 16 Si 0.87 23.88 27.74 -169.99 -4.71 19.16 16 17 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 18 H -0.29 -7.91 7.11 56.52 0.40 -7.50 16 19 H -0.27 -7.35 6.52 56.52 0.37 -6.98 16 20 C -0.10 -1.18 2.71 -89.50 -0.24 -1.43 16 21 C -0.12 -1.36 5.33 -25.08 -0.13 -1.49 16 22 C -0.12 -1.23 6.91 -24.74 -0.17 -1.40 16 23 C -0.12 -1.30 6.83 -25.07 -0.17 -1.47 16 24 C -0.12 -1.38 6.23 -25.61 -0.16 -1.54 16 25 C -0.15 -2.24 10.79 -39.31 -0.42 -2.67 16 26 C 0.05 0.58 7.44 -17.10 -0.13 0.45 16 27 Cl 0.00 0.01 28.67 -51.86 -1.49 -1.48 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.10 0.46 7.72 -51.93 -0.40 0.06 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.41 5.90 8.57 -40.82 -0.35 5.55 16 32 H 0.04 0.78 7.22 -51.93 -0.37 0.41 16 33 H 0.03 0.55 8.14 -51.92 -0.42 0.12 16 34 H 0.36 9.35 4.67 -40.82 -0.19 9.16 16 35 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.94 7.57 -51.93 -0.39 0.54 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.92 7.34 -51.93 -0.38 0.54 16 45 H 0.17 2.37 8.06 -52.48 -0.42 1.95 16 LS Contribution 382.70 15.07 5.77 5.77 Total: -1.00 -35.98 382.70 -8.48 -44.46 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -6.69 Total: 10.06 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -1.83 Total: -0.28 kcal Atomic # 7 Polarization: -67.21 SS G_CDS: 0.39 Total: -66.82 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -4.71 Total: 19.16 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.49 Total: -1.48 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.98 -8.48 -44.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324485070.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.826 kcal (2) G-P(sol) polarization free energy of solvation -35.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds