Wall clock time and date at job start Sat Apr 11 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28455 * 124.88456 * 2 1 4 4 C 1.31799 * 110.11492 * 180.02562 * 3 2 1 5 5 C 1.47705 * 126.51710 * 180.02562 * 4 3 2 6 6 O 1.21572 * 120.00233 * 180.02562 * 5 4 3 7 7 N 1.34782 * 120.00008 * 0.02818 * 5 4 3 8 8 C 1.46501 * 120.00012 * 185.30162 * 7 5 4 9 9 H 1.08997 * 109.47225 * 355.21344 * 8 7 5 10 10 C 1.53001 * 109.46876 * 115.20781 * 8 7 5 11 11 N 1.46494 * 109.47450 * 305.00137 * 10 8 7 12 12 C 1.36935 * 120.00258 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99877 * 359.97438 * 12 11 10 14 14 C 1.38812 * 120.00300 * 180.02562 * 12 11 10 15 15 N 1.31623 * 120.00136 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 119.99826 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46734 * 90.00572 * 16 14 12 18 18 H 1.48499 * 109.47025 * 210.00258 * 16 14 12 19 19 H 1.48503 * 109.47285 * 330.00469 * 16 14 12 20 20 C 1.52996 * 109.47127 * 235.20720 * 8 7 5 21 21 C 1.54257 * 110.03287 * 180.58861 * 20 8 7 22 22 C 1.54889 * 104.19864 * 217.10804 * 21 20 8 23 23 C 1.54888 * 102.74965 * 37.94112 * 22 21 20 24 24 C 1.53883 * 110.03008 * 63.42211 * 20 8 7 25 25 C 1.41503 * 106.97164 * 0.26329 * 4 3 2 26 26 C 1.35062 * 124.88200 * 180.02562 * 2 1 3 27 27 Cl 1.73602 * 126.40294 * 0.03280 * 26 2 1 28 28 H 1.08994 * 109.47698 * 90.01995 * 1 2 3 29 29 H 1.09001 * 109.46975 * 210.02085 * 1 2 3 30 30 H 1.09004 * 109.46679 * 330.01289 * 1 2 3 31 31 H 0.96996 * 119.99723 * 5.29852 * 7 5 4 32 32 H 1.09002 * 109.47297 * 184.99808 * 10 8 7 33 33 H 1.09008 * 109.47058 * 65.00077 * 10 8 7 34 34 H 0.97004 * 120.00068 * 359.97438 * 11 10 8 35 35 H 0.96999 * 119.99721 * 179.97438 * 15 14 12 36 36 H 1.08998 * 110.01630 * 302.03285 * 20 8 7 37 37 H 1.09003 * 110.48909 * 335.78152 * 21 20 8 38 38 H 1.09000 * 110.49066 * 98.42923 * 21 20 8 39 39 H 1.09000 * 110.75703 * 279.63033 * 22 21 20 40 40 H 1.08999 * 110.76124 * 156.25552 * 22 21 20 41 41 H 1.08998 * 110.49172 * 203.38416 * 23 22 21 42 42 H 1.09003 * 110.59917 * 80.78882 * 23 22 21 43 43 H 1.08997 * 110.02954 * 238.56990 * 24 20 8 44 44 H 1.09000 * 110.02932 * 359.95221 * 24 20 8 45 45 H 1.08008 * 127.25960 * 179.70343 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0537 0.0000 4 6 3.4741 0.7177 -0.0006 5 6 4.6267 1.6415 -0.0002 6 8 5.7594 1.2002 -0.0013 7 7 4.4225 2.9738 0.0013 8 6 5.5602 3.8893 -0.1156 9 1 6.4885 3.3182 -0.1077 10 6 5.4533 4.6707 -1.4267 11 7 5.3408 3.7328 -2.5464 12 6 5.2332 4.2053 -3.8271 13 1 5.2307 5.2694 -4.0117 14 6 5.1260 3.3166 -4.8881 15 7 5.0220 3.7707 -6.1191 16 14 5.1295 1.4761 -4.5687 17 1 3.7361 1.0075 -4.3594 18 1 5.7184 0.7723 -5.7362 19 1 5.9369 1.1855 -3.3567 20 6 5.5521 4.8658 1.0622 21 6 6.7372 5.8461 0.9441 22 6 7.2058 6.0537 2.4057 23 6 7.0405 4.6420 3.0214 24 6 5.7449 4.1002 2.3830 25 6 3.5285 -0.6962 -0.0072 26 6 2.2374 -1.1080 -0.0005 27 17 1.6804 -2.7522 -0.0020 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5137 31 1 3.5223 3.3263 0.0798 32 1 6.3435 5.2863 -1.5564 33 1 4.5707 5.3097 -1.3979 34 1 5.3434 2.7770 -2.3806 35 1 4.9476 3.1497 -6.8604 36 1 4.6117 5.4166 1.0838 37 1 7.5364 5.4082 0.3460 38 1 6.4091 6.7910 0.5109 39 1 6.5683 6.7750 2.9170 40 1 8.2488 6.3686 2.4361 41 1 6.9336 4.7080 4.1041 42 1 7.8882 4.0083 2.7605 43 1 4.8985 4.2801 3.0458 44 1 5.8433 3.0328 2.1849 45 1 4.4126 -1.3166 -0.0138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324485070.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:35 Heat of formation + Delta-G solvation = 17.892292 kcal Electronic energy + Delta-G solvation = -28049.182884 eV Core-core repulsion = 24128.332220 eV Total energy + Delta-G solvation = -3920.850664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.91958 -41.08780 -39.16005 -38.06712 -37.01023 -35.37515 -34.69822 -33.38504 -31.90726 -31.24614 -29.55673 -28.58195 -27.91197 -25.29414 -24.20118 -22.77527 -22.65415 -21.64584 -21.18450 -20.66889 -19.85040 -19.10355 -17.77703 -17.69002 -17.34197 -16.73971 -16.58134 -16.11998 -15.80473 -15.47526 -15.34088 -15.23901 -15.02011 -14.82859 -14.26296 -14.07970 -13.93172 -13.84908 -13.58958 -13.31842 -13.20599 -13.05329 -12.87521 -12.73049 -12.25869 -12.21198 -12.02965 -11.91753 -11.90507 -11.82502 -11.72797 -11.45514 -11.40647 -11.24380 -11.03472 -10.44173 -10.21575 -10.01921 -9.33030 -8.09255 -5.39257 0.25905 0.28688 0.67759 1.24065 1.28308 1.36848 1.41738 2.07188 2.24124 2.38497 3.04656 3.22840 3.41000 3.70983 3.76619 3.82387 3.94442 4.04812 4.16834 4.22540 4.25245 4.31586 4.39830 4.52143 4.54818 4.62562 4.72844 4.74820 4.84037 4.87705 4.91171 4.96778 5.05160 5.12312 5.14177 5.30641 5.30899 5.33757 5.46739 5.53999 5.58141 5.71783 6.16006 6.30304 6.60675 7.02027 7.07878 7.80125 7.96986 9.12388 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007589 B = 0.004794 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3688.573419 B = 5838.789883 C = 8611.487499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.264 5.264 3 N -0.238 5.238 4 C -0.034 4.034 5 C 0.601 3.399 6 O -0.566 6.566 7 N -0.691 5.691 8 C 0.144 3.856 9 H 0.079 0.921 10 C 0.143 3.857 11 N -0.759 5.759 12 C -0.223 4.223 13 H 0.070 0.930 14 C -0.052 4.052 15 N -0.976 5.976 16 Si 0.933 3.067 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.273 1.273 20 C -0.087 4.087 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.114 4.114 25 C -0.174 4.174 26 C 0.052 3.948 27 Cl 0.030 6.970 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.414 0.586 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.359 0.641 35 H 0.258 0.742 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.042 0.958 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.522 -6.149 22.968 25.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.056 5.056 3 N -0.077 5.077 4 C -0.192 4.192 5 C 0.386 3.614 6 O -0.443 6.443 7 N -0.340 5.340 8 C 0.039 3.961 9 H 0.097 0.903 10 C 0.016 3.984 11 N -0.404 5.404 12 C -0.354 4.354 13 H 0.088 0.912 14 C -0.244 4.244 15 N -0.627 5.627 16 Si 0.763 3.237 17 H -0.210 1.210 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.107 4.107 21 C -0.159 4.159 22 C -0.153 4.153 23 C -0.161 4.161 24 C -0.152 4.152 25 C -0.203 4.203 26 C -0.099 4.099 27 Cl 0.058 6.942 28 H 0.121 0.879 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.250 0.750 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.192 0.808 35 H 0.067 0.933 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.061 0.939 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -9.631 -5.507 22.798 25.354 hybrid contribution 0.114 -2.035 -0.721 2.162 sum -9.517 -7.542 22.077 25.197 Atomic orbital electron populations 1.22809 0.69630 1.08079 1.06679 1.45942 1.09655 1.00868 1.49122 1.73620 1.02593 1.12842 1.18656 1.21738 0.91228 0.94159 1.12063 1.17025 0.86374 0.82365 0.75658 1.90770 1.23684 1.77650 1.52243 1.45635 1.11648 1.04550 1.72213 1.21468 0.89528 0.90410 0.94654 0.90251 1.21273 0.99657 0.92047 0.85376 1.42764 1.90090 1.04572 1.02959 1.19098 1.39733 0.93267 0.83349 0.91247 1.25215 1.03259 1.00800 0.95088 1.69826 1.59655 1.34636 0.98620 0.85722 0.77863 0.83104 0.77041 1.20968 1.21399 1.19885 1.22026 1.00875 0.95181 0.92598 1.22440 0.96662 0.98804 0.97957 1.22466 1.01654 0.96721 0.94472 1.22359 0.96856 0.96655 1.00265 1.22121 0.98789 0.98717 0.95537 1.21633 0.96759 0.93616 1.08293 1.21910 0.90645 0.85035 1.12262 1.98408 1.89240 1.09338 1.97170 0.87920 0.85879 0.85987 0.75005 0.93708 0.94137 0.80823 0.93299 0.88940 0.92460 0.90372 0.90127 0.90924 0.90457 0.92791 0.90640 0.93882 0.80864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 11.14 127.77 1.42 2.16 16 2 N -0.26 -5.90 3.70 -359.15 -1.33 -7.23 16 3 N -0.24 -6.78 11.67 -48.18 -0.56 -7.34 16 4 C -0.03 -1.12 7.13 42.46 0.30 -0.81 16 5 C 0.60 22.11 7.07 86.74 0.61 22.72 16 6 O -0.57 -24.30 16.27 -3.94 -0.06 -24.36 16 7 N -0.69 -22.26 4.01 -445.53 -1.78 -24.05 16 8 C 0.14 4.64 1.70 44.99 0.08 4.72 16 9 H 0.08 2.99 6.91 -2.39 -0.02 2.98 16 10 C 0.14 5.54 5.61 86.38 0.48 6.02 16 11 N -0.76 -38.16 5.24 -343.45 -1.80 -39.96 16 12 C -0.22 -13.26 10.47 84.03 0.88 -12.38 16 13 H 0.07 4.36 8.06 -2.91 -0.02 4.34 16 14 C -0.05 -3.20 5.50 84.86 0.47 -2.73 16 15 N -0.98 -64.22 13.97 21.65 0.30 -63.92 16 16 Si 0.93 50.30 27.74 68.60 1.90 52.20 16 17 H -0.28 -14.93 7.11 99.48 0.71 -14.22 16 18 H -0.29 -15.29 7.11 99.48 0.71 -14.58 16 19 H -0.27 -14.69 6.52 99.48 0.65 -14.04 16 20 C -0.09 -2.05 2.71 -10.07 -0.03 -2.07 16 21 C -0.12 -2.62 5.33 31.67 0.17 -2.45 16 22 C -0.12 -2.01 6.91 31.88 0.22 -1.79 16 23 C -0.12 -2.37 6.83 31.67 0.22 -2.15 16 24 C -0.11 -2.51 6.23 31.32 0.20 -2.31 16 25 C -0.17 -5.13 10.79 22.44 0.24 -4.88 16 26 C 0.05 1.24 7.44 83.57 0.62 1.86 16 27 Cl 0.03 0.52 28.67 -2.72 -0.08 0.44 16 28 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.12 0.73 7.72 -2.39 -0.02 0.71 16 30 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.41 11.75 8.57 -92.71 -0.79 10.95 16 32 H 0.05 1.73 7.22 -2.39 -0.02 1.71 16 33 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.36 18.62 4.67 -92.71 -0.43 18.19 16 35 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.06 1.43 7.57 -2.39 -0.02 1.42 16 38 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.04 1.17 7.34 -2.39 -0.02 1.15 16 45 H 0.17 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -78.78 382.70 2.21 -76.57 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: -0.26 Total: 31.76 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 5.88 Total: 5.89 kcal Atomic # 7 Polarization: -137.32 SS G_CDS: -5.17 Total: -142.50 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.06 Total: -24.36 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 1.90 Total: 52.20 kcal Atomic # 17 Polarization: 0.52 SS G_CDS: -0.08 Total: 0.44 kcal Total: -78.78 2.21 -76.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324485070.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.462 kcal (2) G-P(sol) polarization free energy of solvation -78.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds