Wall clock time and date at job start Sat Apr 11 2020 06:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99973 * 2 1 4 4 H 1.48495 * 109.47199 * 269.99780 * 3 2 1 5 5 H 1.48496 * 109.46998 * 30.00047 * 3 2 1 6 6 H 1.48506 * 109.47057 * 149.99654 * 3 2 1 7 7 C 1.38806 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00274 * 0.02562 * 7 2 1 9 9 S 1.76203 * 119.99342 * 180.02562 * 7 2 1 10 10 C 1.81006 * 99.99709 * 180.02562 * 9 7 2 11 11 C 1.50691 * 109.47145 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00043 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00210 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00439 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47358 * 180.02562 * 14 13 11 16 16 H 1.09006 * 110.51876 * 307.79604 * 15 14 13 17 17 C 1.55058 * 110.58806 * 185.00599 * 15 14 13 18 18 C 1.55015 * 102.13104 * 204.92921 * 17 15 14 19 19 C 1.53333 * 103.79428 * 20.85261 * 18 17 15 20 20 C 1.52680 * 115.53011 * 133.56299 * 19 18 17 21 21 N 1.47630 * 87.73136 * 90.12808 * 20 19 18 22 22 C 1.46896 * 111.00299 * 138.08413 * 21 20 19 23 23 C 1.53002 * 109.47487 * 170.00408 * 22 21 20 24 24 C 1.53002 * 117.49773 * 185.00232 * 23 22 21 25 25 C 1.53000 * 60.02940 * 252.51785 * 24 23 22 26 26 C 1.47632 * 88.01158 * 26.32013 * 21 20 19 27 27 O 1.42854 * 108.30915 * 1.62549 * 19 18 17 28 28 H 0.96999 * 119.99920 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47190 * 59.99747 * 10 9 7 30 30 H 1.09004 * 109.46973 * 299.99916 * 10 9 7 31 31 H 0.97006 * 119.99892 * 359.97438 * 13 11 10 32 32 H 1.09010 * 109.46959 * 60.00225 * 14 13 11 33 33 H 1.08997 * 109.47458 * 300.00493 * 14 13 11 34 34 H 1.09000 * 110.87357 * 86.76367 * 17 15 14 35 35 H 1.09011 * 110.86606 * 323.09003 * 17 15 14 36 36 H 1.08991 * 110.56563 * 262.27001 * 18 17 15 37 37 H 1.09002 * 110.68717 * 139.48604 * 18 17 15 38 38 H 1.09000 * 113.50816 * 335.41447 * 20 19 18 39 39 H 1.09000 * 113.57289 * 204.85488 * 20 19 18 40 40 H 1.09003 * 109.47121 * 50.00010 * 22 21 20 41 41 H 1.09003 * 109.47191 * 290.00433 * 22 21 20 42 42 H 1.09000 * 115.55766 * 330.68548 * 23 22 21 43 43 H 1.09002 * 117.49918 * 145.01819 * 24 23 22 44 44 H 1.09002 * 117.49754 * 0.02562 * 24 23 22 45 45 H 1.09008 * 117.49673 * 107.47884 * 25 24 23 46 46 H 1.08999 * 117.49942 * 252.47315 * 25 24 23 47 47 H 1.08998 * 113.50719 * 88.39488 * 26 21 20 48 48 H 1.08992 * 113.51358 * 218.96723 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0867 -2.9846 0.0009 11 6 5.5730 -3.2325 0.0021 12 8 6.3440 -2.2963 0.0025 13 7 6.0457 -4.4947 0.0026 14 6 7.4907 -4.7358 0.0032 15 6 7.7564 -6.2426 0.0031 16 1 7.2063 -6.7276 0.8095 17 6 9.2751 -6.5284 0.1303 18 6 9.3986 -7.9293 -0.5217 19 6 8.1398 -8.0407 -1.3901 20 6 8.3635 -8.5537 -2.8106 21 7 8.1512 -9.9182 -2.2885 22 6 7.3219 -10.7101 -3.2067 23 6 7.3290 -12.1751 -2.7656 24 6 6.6152 -13.1869 -3.6643 25 6 5.9973 -12.7864 -2.3231 26 6 7.3313 -9.3240 -1.2141 27 8 7.4059 -6.8205 -1.2751 28 1 -0.4850 0.8400 0.0004 29 1 3.6440 -3.4314 -0.8893 30 1 3.6434 -3.4318 0.8907 31 1 5.4291 -5.2435 0.0026 32 1 7.9334 -4.2885 0.8933 33 1 7.9340 -4.2890 -0.8867 34 1 9.5782 -6.5591 1.1769 35 1 9.8568 -5.7903 -0.4220 36 1 9.4074 -8.7074 0.2414 37 1 10.2955 -7.9893 -1.1384 38 1 9.3744 -8.3822 -3.1806 39 1 7.5963 -8.2336 -3.5156 40 1 7.7234 -10.6329 -4.2171 41 1 6.3000 -10.3312 -3.1919 42 1 8.2310 -12.5071 -2.2515 43 1 7.0475 -14.1846 -3.7414 44 1 6.1409 -12.8089 -4.5700 45 1 5.1165 -12.1446 -2.3465 46 1 6.0227 -13.5207 -1.5180 47 1 6.2797 -9.2152 -1.4793 48 1 7.4756 -9.7991 -0.2438 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327343115.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:47 Heat of formation + Delta-G solvation = -20.227043 kcal Electronic energy + Delta-G solvation = -26482.850794 eV Core-core repulsion = 22665.931202 eV Total energy + Delta-G solvation = -3816.919593 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.48779 -39.37299 -38.52027 -37.20628 -34.53218 -32.59214 -32.42478 -31.16072 -29.68966 -27.76916 -26.58680 -25.60904 -24.61903 -23.02359 -22.78363 -21.73540 -20.90327 -20.38726 -19.69850 -17.88811 -17.32915 -16.86209 -16.43504 -16.10763 -15.91737 -15.75370 -15.27122 -15.09094 -14.94283 -14.39141 -14.33124 -13.89377 -13.65939 -13.59487 -13.17292 -13.15809 -13.03143 -12.78520 -12.56091 -12.17966 -12.07557 -11.96439 -11.85114 -11.60331 -11.56326 -11.24712 -11.22056 -11.01301 -10.99610 -10.66725 -10.58142 -10.33993 -9.92509 -9.84455 -9.50936 -9.48117 -9.00835 -8.94687 -8.48446 -6.90111 -6.27672 -3.99160 2.77498 2.99590 3.09536 3.30615 3.34470 3.37278 3.51685 3.57644 3.68046 3.87696 4.12331 4.16746 4.34244 4.34912 4.43570 4.50289 4.56835 4.66318 4.70673 4.75069 4.80391 4.93528 4.98930 5.06532 5.11347 5.12567 5.16618 5.20687 5.23303 5.31557 5.33432 5.36888 5.44920 5.46893 5.51155 5.59311 5.65933 5.67141 5.76905 5.78839 5.81722 5.82411 6.04254 6.49940 6.52466 6.59794 7.63258 7.95465 8.43111 8.51158 9.18532 10.81551 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016167 B = 0.001895 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.524277 B =14772.670506 C =16111.899347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.123 4.123 11 C 0.531 3.469 12 O -0.522 6.522 13 N -0.733 5.733 14 C 0.129 3.871 15 C 0.065 3.935 16 H 0.080 0.920 17 C -0.148 4.148 18 C -0.116 4.116 19 C 0.075 3.925 20 C 0.007 3.993 21 N -0.462 5.462 22 C 0.051 3.949 23 C -0.142 4.142 24 C -0.180 4.180 25 C -0.183 4.183 26 C -0.011 4.011 27 O -0.349 6.349 28 H 0.270 0.730 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.401 0.599 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.112 0.888 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.078 0.922 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.292 -26.403 -3.051 32.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.274 4.274 11 C 0.317 3.683 12 O -0.396 6.396 13 N -0.388 5.388 14 C 0.005 3.995 15 C 0.007 3.993 16 H 0.098 0.902 17 C -0.186 4.186 18 C -0.154 4.154 19 C 0.034 3.966 20 C -0.121 4.121 21 N -0.185 5.185 22 C -0.078 4.078 23 C -0.161 4.161 24 C -0.217 4.217 25 C -0.220 4.220 26 C -0.140 4.140 27 O -0.267 6.267 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.236 0.764 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.130 0.870 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.112 0.888 47 H 0.097 0.903 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 20.820 -25.089 -3.071 32.747 hybrid contribution -1.864 -0.487 -0.235 1.941 sum 18.956 -25.576 -3.307 32.006 Atomic orbital electron populations 1.69943 1.05907 1.27737 1.48137 1.24722 0.94462 0.98976 0.93202 0.86725 0.81884 0.83251 0.79928 1.19219 1.19957 1.15924 1.22325 0.88297 0.97537 1.58700 0.89390 1.84775 1.09243 1.00145 1.97425 1.23272 0.94029 1.04295 1.05818 1.20266 0.90606 0.82223 0.75202 1.90696 1.58790 1.42220 1.47927 1.45887 1.07203 1.08161 1.77532 1.21333 0.82384 0.92556 1.03241 1.23477 0.95222 0.93804 0.86748 0.90231 1.23179 0.95651 0.97348 1.02430 1.22465 0.96872 0.97211 0.98849 1.22962 0.92117 0.84870 0.96638 1.24023 1.03324 0.88766 0.96002 1.68808 1.32782 1.09337 1.07615 1.22263 0.96318 0.92461 0.96733 1.22208 0.96806 0.93121 1.03956 1.22963 1.04358 0.99747 0.94658 1.23070 0.96731 1.03949 0.98225 1.24455 0.97448 0.93965 0.98179 1.88872 1.66085 1.35308 1.36437 0.91965 0.88486 0.88477 0.76444 0.90033 0.90657 0.89540 0.89769 0.89894 0.89675 0.88820 0.90291 0.90344 0.93180 0.86995 0.88688 0.88848 0.88919 0.88816 0.90349 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.71 13.97 55.49 0.78 -25.94 16 2 C 0.09 2.80 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.94 27.74 -169.99 -4.72 17.23 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 7 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 8 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 9 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 10 C -0.12 -2.43 6.16 36.00 0.22 -2.21 16 11 C 0.53 9.60 7.85 -10.99 -0.09 9.52 16 12 O -0.52 -11.38 15.86 5.56 0.09 -11.29 16 13 N -0.73 -9.65 5.56 -60.30 -0.33 -9.99 16 14 C 0.13 1.43 5.41 -4.04 -0.02 1.41 16 15 C 0.07 0.54 3.38 -25.64 -0.09 0.46 16 16 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 17 C -0.15 -0.95 6.60 -24.58 -0.16 -1.11 16 18 C -0.12 -0.73 6.45 -25.49 -0.16 -0.89 16 19 C 0.07 0.58 1.65 -90.77 -0.15 0.43 16 20 C 0.01 0.06 7.21 -7.14 -0.05 0.00 16 21 N -0.46 -3.40 6.29 -244.67 -1.54 -4.94 16 22 C 0.05 0.35 5.10 -3.82 -0.02 0.33 16 23 C -0.14 -0.92 6.02 -90.58 -0.55 -1.47 16 24 C -0.18 -1.02 10.25 -26.73 -0.27 -1.30 16 25 C -0.18 -1.11 10.18 -26.70 -0.27 -1.38 16 26 C -0.01 -0.08 7.23 -7.13 -0.05 -0.14 16 27 O -0.35 -3.46 11.02 -35.23 -0.39 -3.85 16 28 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.10 1.80 8.14 -51.92 -0.42 1.37 16 30 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 31 H 0.40 4.36 8.47 -40.82 -0.35 4.01 16 32 H 0.08 0.89 8.14 -51.92 -0.42 0.46 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.55 8.05 -51.92 -0.42 0.14 16 36 H 0.08 0.46 7.79 -51.93 -0.40 0.06 16 37 H 0.08 0.49 7.81 -51.93 -0.41 0.09 16 38 H 0.09 0.63 7.91 -51.93 -0.41 0.22 16 39 H 0.08 0.63 7.91 -51.93 -0.41 0.22 16 40 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 41 H 0.05 0.35 7.04 -51.93 -0.37 -0.01 16 42 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.57 8.03 -51.92 -0.42 0.15 16 46 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.08 0.62 7.42 -51.93 -0.39 0.24 16 48 H 0.09 0.61 7.91 -51.93 -0.41 0.20 16 LS Contribution 403.14 15.07 6.08 6.08 Total: -1.00 -34.08 403.14 -11.68 -45.76 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -8.20 Total: 1.05 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -1.45 Total: -8.47 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: -1.10 Total: -40.87 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.30 Total: -15.14 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.72 Total: 17.23 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.08 -11.68 -45.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327343115.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.530 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds