Wall clock time and date at job start Sat Apr 11 2020 06:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99973 * 2 1 4 4 H 1.48495 * 109.47199 * 269.99780 * 3 2 1 5 5 H 1.48496 * 109.46998 * 30.00047 * 3 2 1 6 6 H 1.48506 * 109.47057 * 149.99654 * 3 2 1 7 7 C 1.38806 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00274 * 0.02562 * 7 2 1 9 9 S 1.76203 * 119.99342 * 180.02562 * 7 2 1 10 10 C 1.81006 * 99.99709 * 180.02562 * 9 7 2 11 11 C 1.50691 * 109.47145 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00043 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00210 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00439 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47358 * 180.02562 * 14 13 11 16 16 H 1.09006 * 110.51876 * 307.79604 * 15 14 13 17 17 C 1.55058 * 110.58806 * 185.00599 * 15 14 13 18 18 C 1.55015 * 102.13104 * 204.92921 * 17 15 14 19 19 C 1.53333 * 103.79428 * 20.85261 * 18 17 15 20 20 C 1.52680 * 115.53011 * 133.56299 * 19 18 17 21 21 N 1.47630 * 87.73136 * 90.12808 * 20 19 18 22 22 C 1.46896 * 111.00299 * 138.08413 * 21 20 19 23 23 C 1.53002 * 109.47487 * 170.00408 * 22 21 20 24 24 C 1.53002 * 117.49773 * 185.00232 * 23 22 21 25 25 C 1.53000 * 60.02940 * 252.51785 * 24 23 22 26 26 C 1.47632 * 88.01158 * 26.32013 * 21 20 19 27 27 O 1.42854 * 108.30915 * 1.62549 * 19 18 17 28 28 H 0.96999 * 119.99920 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47190 * 59.99747 * 10 9 7 30 30 H 1.09004 * 109.46973 * 299.99916 * 10 9 7 31 31 H 0.97006 * 119.99892 * 359.97438 * 13 11 10 32 32 H 1.09010 * 109.46959 * 60.00225 * 14 13 11 33 33 H 1.08997 * 109.47458 * 300.00493 * 14 13 11 34 34 H 1.09000 * 110.87357 * 86.76367 * 17 15 14 35 35 H 1.09011 * 110.86606 * 323.09003 * 17 15 14 36 36 H 1.08991 * 110.56563 * 262.27001 * 18 17 15 37 37 H 1.09002 * 110.68717 * 139.48604 * 18 17 15 38 38 H 1.09000 * 113.50816 * 335.41447 * 20 19 18 39 39 H 1.09000 * 113.57289 * 204.85488 * 20 19 18 40 40 H 1.09003 * 109.47121 * 50.00010 * 22 21 20 41 41 H 1.09003 * 109.47191 * 290.00433 * 22 21 20 42 42 H 1.09000 * 115.55766 * 330.68548 * 23 22 21 43 43 H 1.09002 * 117.49918 * 145.01819 * 24 23 22 44 44 H 1.09002 * 117.49754 * 0.02562 * 24 23 22 45 45 H 1.09008 * 117.49673 * 107.47884 * 25 24 23 46 46 H 1.08999 * 117.49942 * 252.47315 * 25 24 23 47 47 H 1.08998 * 113.50719 * 88.39488 * 26 21 20 48 48 H 1.08992 * 113.51358 * 218.96723 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0867 -2.9846 0.0009 11 6 5.5730 -3.2325 0.0021 12 8 6.3440 -2.2963 0.0025 13 7 6.0457 -4.4947 0.0026 14 6 7.4907 -4.7358 0.0032 15 6 7.7564 -6.2426 0.0031 16 1 7.2063 -6.7276 0.8095 17 6 9.2751 -6.5284 0.1303 18 6 9.3986 -7.9293 -0.5217 19 6 8.1398 -8.0407 -1.3901 20 6 8.3635 -8.5537 -2.8106 21 7 8.1512 -9.9182 -2.2885 22 6 7.3219 -10.7101 -3.2067 23 6 7.3290 -12.1751 -2.7656 24 6 6.6152 -13.1869 -3.6643 25 6 5.9973 -12.7864 -2.3231 26 6 7.3313 -9.3240 -1.2141 27 8 7.4059 -6.8205 -1.2751 28 1 -0.4850 0.8400 0.0004 29 1 3.6440 -3.4314 -0.8893 30 1 3.6434 -3.4318 0.8907 31 1 5.4291 -5.2435 0.0026 32 1 7.9334 -4.2885 0.8933 33 1 7.9340 -4.2890 -0.8867 34 1 9.5782 -6.5591 1.1769 35 1 9.8568 -5.7903 -0.4220 36 1 9.4074 -8.7074 0.2414 37 1 10.2955 -7.9893 -1.1384 38 1 9.3744 -8.3822 -3.1806 39 1 7.5963 -8.2336 -3.5156 40 1 7.7234 -10.6329 -4.2171 41 1 6.3000 -10.3312 -3.1919 42 1 8.2310 -12.5071 -2.2515 43 1 7.0475 -14.1846 -3.7414 44 1 6.1409 -12.8089 -4.5700 45 1 5.1165 -12.1446 -2.3465 46 1 6.0227 -13.5207 -1.5180 47 1 6.2797 -9.2152 -1.4793 48 1 7.4756 -9.7991 -0.2438 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327343115.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:46 Heat of formation + Delta-G solvation = -44.975106 kcal Electronic energy + Delta-G solvation = -26483.923951 eV Core-core repulsion = 22665.931202 eV Total energy + Delta-G solvation = -3817.992749 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.08379 -40.65958 -39.24235 -37.76201 -35.70861 -34.67463 -33.20927 -32.10117 -30.79849 -28.68983 -27.83787 -27.16308 -25.34014 -23.62845 -23.23973 -22.45335 -21.73349 -21.39739 -20.30918 -19.89079 -18.00793 -17.92658 -17.43583 -17.28846 -17.06626 -16.62390 -16.44326 -16.21301 -15.91063 -15.68652 -15.07592 -14.93227 -14.87042 -14.72819 -14.32749 -14.20909 -13.97013 -13.70117 -13.36675 -13.33911 -13.15300 -13.00790 -12.75204 -12.67432 -12.58293 -12.40978 -12.23990 -12.10406 -11.85549 -11.75759 -11.53562 -11.17422 -11.15910 -11.01599 -10.83201 -10.55162 -10.54553 -10.17743 -10.06051 -9.00180 -8.51847 -6.22839 0.98311 1.31570 1.46650 1.54602 1.56125 2.20276 2.25847 2.50302 2.71403 2.85169 2.86250 3.02022 3.31035 3.54423 3.57653 3.81375 3.87892 3.92852 3.94927 4.00357 4.08257 4.12845 4.21724 4.26451 4.36259 4.38950 4.45943 4.47751 4.55982 4.62034 4.67761 4.70906 4.75691 4.76589 4.85713 4.89799 4.99867 5.01433 5.11168 5.18036 5.21803 5.24384 5.30754 5.37606 5.70393 5.93512 5.97680 6.11027 6.42883 6.93125 7.16320 8.60539 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016167 B = 0.001895 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.524277 B =14772.670506 C =16111.899347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.916 3.084 4 H -0.263 1.263 5 H -0.258 1.258 6 H -0.236 1.236 7 C -0.530 4.530 8 H 0.062 0.938 9 S -0.174 6.174 10 C -0.112 4.112 11 C 0.535 3.465 12 O -0.563 6.563 13 N -0.711 5.711 14 C 0.128 3.872 15 C 0.069 3.931 16 H 0.095 0.905 17 C -0.143 4.143 18 C -0.111 4.111 19 C 0.072 3.928 20 C 0.005 3.995 21 N -0.462 5.462 22 C 0.052 3.948 23 C -0.147 4.147 24 C -0.176 4.176 25 C -0.185 4.185 26 C -0.009 4.009 27 O -0.372 6.372 28 H 0.277 0.723 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.415 0.585 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.045 0.955 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.070 0.930 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.983 -27.639 -2.590 34.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.182 1.182 6 H -0.160 1.160 7 C -0.678 4.678 8 H 0.080 0.920 9 S 0.053 5.947 10 C -0.263 4.263 11 C 0.321 3.679 12 O -0.441 6.441 13 N -0.364 5.364 14 C 0.004 3.996 15 C 0.012 3.988 16 H 0.113 0.887 17 C -0.181 4.181 18 C -0.149 4.149 19 C 0.031 3.969 20 C -0.124 4.124 21 N -0.186 5.186 22 C -0.077 4.077 23 C -0.166 4.166 24 C -0.213 4.213 25 C -0.222 4.222 26 C -0.138 4.138 27 O -0.291 6.291 28 H 0.086 0.914 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.252 0.748 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.126 0.874 43 H 0.122 0.878 44 H 0.114 0.886 45 H 0.108 0.892 46 H 0.117 0.883 47 H 0.088 0.912 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 22.508 -26.385 -2.610 34.779 hybrid contribution -2.376 -0.292 -0.415 2.430 sum 20.131 -26.677 -3.025 33.557 Atomic orbital electron populations 1.70019 1.07299 1.29036 1.49099 1.25586 0.95307 1.02310 0.92869 0.85851 0.80690 0.79514 0.80210 1.18746 1.18234 1.16008 1.22466 0.90271 0.96704 1.58323 0.92013 1.84680 1.06405 1.06068 1.97582 1.23266 0.95937 0.99687 1.07363 1.19927 0.89406 0.83297 0.75283 1.90685 1.59284 1.43767 1.50410 1.45711 1.08722 1.06814 1.75146 1.21496 0.80442 0.94771 1.02882 1.23492 0.96939 0.91654 0.86716 0.88732 1.23182 0.93919 0.97285 1.03672 1.22467 0.96183 0.97357 0.98863 1.23115 0.92662 0.84159 0.96946 1.24044 1.03431 0.88940 0.95976 1.68819 1.32855 1.09188 1.07703 1.22252 0.95951 0.92673 0.96784 1.22163 0.96829 0.92993 1.04571 1.23034 1.03841 0.99923 0.94538 1.23108 0.96376 1.04022 0.98737 1.24420 0.96940 0.93918 0.98501 1.88847 1.66775 1.36278 1.37198 0.91355 0.87207 0.86697 0.74822 0.89364 0.92102 0.87602 0.90040 0.88802 0.89135 0.88125 0.91215 0.90200 0.93692 0.87378 0.87842 0.88608 0.89210 0.88299 0.91217 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.11 13.97 21.65 0.30 -55.81 16 2 C 0.04 2.64 5.50 84.86 0.47 3.11 16 3 Si 0.92 45.28 27.74 68.60 1.90 47.18 16 4 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.24 -11.64 6.74 99.48 0.67 -10.97 16 7 C -0.53 -31.15 10.04 67.96 0.68 -30.47 16 8 H 0.06 3.82 8.03 -2.92 -0.02 3.80 16 9 S -0.17 -8.88 18.55 -56.49 -1.05 -9.93 16 10 C -0.11 -4.28 6.16 71.23 0.44 -3.84 16 11 C 0.54 18.71 7.85 87.65 0.69 19.40 16 12 O -0.56 -24.22 15.86 -3.03 -0.05 -24.27 16 13 N -0.71 -17.40 5.56 -463.06 -2.57 -19.97 16 14 C 0.13 2.61 5.41 86.38 0.47 3.08 16 15 C 0.07 1.00 3.38 31.30 0.11 1.10 16 16 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 17 C -0.14 -1.45 6.60 31.99 0.21 -1.24 16 18 C -0.11 -1.10 6.45 31.40 0.20 -0.90 16 19 C 0.07 0.99 1.65 -10.89 -0.02 0.97 16 20 C 0.00 0.07 7.21 83.76 0.60 0.67 16 21 N -0.46 -6.24 6.29 -928.93 -5.84 -12.08 16 22 C 0.05 0.67 5.10 86.30 0.44 1.11 16 23 C -0.15 -1.76 6.02 -10.77 -0.06 -1.82 16 24 C -0.18 -1.79 10.25 30.60 0.31 -1.48 16 25 C -0.19 -2.07 10.18 30.62 0.31 -1.76 16 26 C -0.01 -0.12 7.23 83.76 0.61 0.49 16 27 O -0.37 -6.79 11.02 -148.98 -1.64 -8.43 16 28 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 29 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 30 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 31 H 0.42 8.05 8.47 -92.70 -0.79 7.26 16 32 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.08 0.89 8.05 -2.38 -0.02 0.88 16 36 H 0.09 0.75 7.79 -2.39 -0.02 0.74 16 37 H 0.09 0.83 7.81 -2.39 -0.02 0.81 16 38 H 0.10 1.24 7.91 -2.39 -0.02 1.22 16 39 H 0.07 1.09 7.91 -2.39 -0.02 1.07 16 40 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 41 H 0.04 0.62 7.04 -2.39 -0.02 0.60 16 42 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.09 1.04 8.03 -2.38 -0.02 1.03 16 46 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.07 1.05 7.42 -2.39 -0.02 1.03 16 48 H 0.10 1.13 7.91 -2.39 -0.02 1.11 16 Total: -1.00 -73.38 403.14 -3.37 -76.75 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.12 Total: 18.15 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 5.45 Total: -11.58 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -8.11 Total: -87.87 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -1.69 Total: -32.70 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.18 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.05 Total: -9.93 kcal Total: -73.38 -3.37 -76.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327343115.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.771 kcal (2) G-P(sol) polarization free energy of solvation -73.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds