Wall clock time and date at job start Sat Apr 11 2020 06:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99785 * 2 1 4 4 H 1.48502 * 109.47044 * 239.99524 * 3 2 1 5 5 H 1.48499 * 109.47250 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47229 * 120.00084 * 3 2 1 7 7 C 1.38815 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99780 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99844 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99809 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.26679 * 32.92297 * 10 9 7 12 12 C 1.51368 * 110.38587 * 270.79496 * 10 9 7 13 13 C 1.38495 * 130.39729 * 43.87937 * 12 10 9 14 14 C 1.38099 * 120.21582 * 180.02562 * 13 12 10 15 15 C 1.38249 * 119.93798 * 359.97438 * 14 13 12 16 16 C 1.38103 * 119.93233 * 359.97438 * 15 14 13 17 17 C 1.38219 * 109.75322 * 223.85377 * 12 10 9 18 18 C 1.51363 * 109.76531 * 359.97438 * 17 12 10 19 19 C 1.54345 * 105.17102 * 17.18970 * 18 17 12 20 20 H 1.09000 * 110.99329 * 91.95180 * 19 18 17 21 21 N 1.46497 * 110.82505 * 215.43347 * 19 18 17 22 22 C 1.34777 * 119.99525 * 267.96840 * 21 19 18 23 23 O 1.21283 * 120.00463 * 0.02562 * 22 21 19 24 24 C 1.50700 * 119.99675 * 179.72583 * 22 21 19 25 25 C 1.53004 * 109.47208 * 180.27843 * 24 22 21 26 26 C 1.50700 * 109.47208 * 180.02562 * 25 24 22 27 27 C 1.34512 * 125.79055 * 89.71801 * 26 25 24 28 28 C 1.41381 * 106.84049 * 179.89028 * 27 26 25 29 29 C 1.34516 * 106.83908 * 0.36840 * 28 27 26 30 30 O 1.34299 * 108.42346 * 359.77594 * 29 28 27 31 31 H 0.96993 * 119.99993 * 0.02562 * 1 2 3 32 32 H 0.96994 * 120.00068 * 359.97438 * 9 7 2 33 33 H 1.08002 * 119.89047 * 359.95052 * 13 12 10 34 34 H 1.08003 * 120.03169 * 179.97438 * 14 13 12 35 35 H 1.08004 * 120.03597 * 179.97438 * 15 14 13 36 36 H 1.08004 * 119.88895 * 180.02562 * 16 15 14 37 37 H 1.09005 * 110.30221 * 258.27368 * 18 17 12 38 38 H 1.08994 * 110.30733 * 136.11727 * 18 17 12 39 39 H 0.97000 * 120.00580 * 87.97586 * 21 19 18 40 40 H 1.09009 * 109.47352 * 300.27556 * 24 22 21 41 41 H 1.08998 * 109.47585 * 60.27844 * 24 22 21 42 42 H 1.09000 * 109.46887 * 300.00372 * 25 24 22 43 43 H 1.08998 * 109.46846 * 59.99549 * 25 24 22 44 44 H 1.07998 * 126.57723 * 0.02562 * 27 26 25 45 45 H 1.07997 * 126.57749 * 180.16195 * 28 27 26 46 46 H 1.08002 * 125.78761 * 179.79182 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9902 -3.5546 0.5563 12 6 2.3388 -4.1036 -1.4182 13 6 2.7851 -3.3840 -2.5141 14 6 2.9719 -4.0130 -3.7293 15 6 2.7132 -5.3654 -3.8532 16 6 2.2691 -6.0849 -2.7612 17 6 2.0807 -5.4558 -1.5418 18 6 1.6096 -6.0104 -0.2146 19 6 1.1904 -4.7768 0.6128 20 1 0.1301 -4.5604 0.4815 21 7 1.5093 -4.9672 2.0299 22 6 0.5886 -5.4908 2.8633 23 8 -0.5037 -5.8049 2.4400 24 6 0.9187 -5.6925 4.3198 25 6 -0.2874 -6.3029 5.0364 26 6 0.0425 -6.5040 6.4930 27 6 -0.1543 -5.6064 7.4754 28 6 0.2914 -6.2076 8.6748 29 6 0.7415 -7.4335 8.3524 30 8 0.5884 -7.6076 7.0296 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 0.0005 33 1 2.9866 -2.3273 -2.4184 34 1 3.3197 -3.4488 -4.5821 35 1 2.8584 -5.8588 -4.8029 36 1 2.0676 -7.1415 -2.8587 37 1 2.4212 -6.5414 0.2830 38 1 0.7575 -6.6737 -0.3628 39 1 2.3830 -4.7163 2.3684 40 1 1.7727 -6.3641 4.4092 41 1 1.1629 -4.7319 4.7734 42 1 -1.1413 -5.6314 4.9469 43 1 -0.5316 -7.2635 4.5828 44 1 -0.5745 -4.6172 7.3686 45 1 0.2766 -5.7659 9.6603 46 1 1.1556 -8.1555 9.0407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328673971.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:51 Heat of formation + Delta-G solvation = 13.046600 kcal Electronic energy + Delta-G solvation = -28316.789865 eV Core-core repulsion = 24365.869175 eV Total energy + Delta-G solvation = -3950.920690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.70896 -40.17892 -39.07081 -36.19052 -34.15879 -33.96593 -32.96529 -32.70073 -31.20234 -29.71566 -29.22079 -27.61787 -26.04681 -24.67357 -23.10624 -21.99488 -21.89710 -20.73781 -20.41871 -20.35303 -19.82526 -17.68667 -17.36324 -16.84031 -16.19736 -15.98570 -15.69145 -15.55730 -15.12811 -14.61235 -14.48224 -14.27393 -13.88495 -13.48567 -13.26189 -13.13172 -12.97737 -12.88394 -12.80084 -12.58228 -12.48713 -12.38787 -12.18735 -11.97049 -11.69168 -11.20318 -11.07909 -10.94538 -10.82853 -10.60266 -10.40027 -10.18908 -10.08556 -9.80183 -9.73653 -9.08742 -8.80136 -8.60853 -8.31823 -8.08900 -7.09734 -5.84685 -3.15353 1.55615 1.79880 1.89370 2.45333 2.78295 2.81967 3.36521 3.38144 3.43049 3.44298 4.22049 4.47750 4.51898 4.74233 4.79456 4.82431 4.89367 5.01464 5.05932 5.15542 5.35023 5.39561 5.42027 5.44696 5.52899 5.56027 5.58428 5.66423 5.72348 5.80997 5.85979 5.87347 5.94848 6.01172 6.11260 6.17122 6.24759 6.34966 6.39525 6.47229 6.63463 6.76604 6.90496 6.98709 7.01564 7.24145 7.49217 7.60341 7.68911 8.31410 8.39496 9.43302 9.96532 10.32130 11.36841 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009172 B = 0.002918 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3052.060080 B = 9592.485515 C =12111.228540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.006 4.006 3 Si 0.906 3.094 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.247 4.247 8 H 0.071 0.929 9 N -0.710 5.710 10 C 0.207 3.793 11 H 0.068 0.932 12 C -0.092 4.092 13 C -0.080 4.080 14 C -0.129 4.129 15 C -0.132 4.132 16 C -0.116 4.116 17 C -0.106 4.106 18 C -0.086 4.086 19 C 0.140 3.860 20 H 0.105 0.895 21 N -0.711 5.711 22 C 0.517 3.483 23 O -0.542 6.542 24 C -0.138 4.138 25 C -0.024 4.024 26 C -0.006 4.006 27 C -0.211 4.211 28 C -0.213 4.213 29 C -0.048 4.048 30 O -0.177 6.177 31 H 0.257 0.743 32 H 0.387 0.613 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.401 0.599 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.089 0.911 44 H 0.149 0.851 45 H 0.147 0.853 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.947 -15.354 9.022 18.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.203 4.203 3 Si 0.736 3.264 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.378 4.378 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.095 3.905 11 H 0.086 0.914 12 C -0.096 4.096 13 C -0.098 4.098 14 C -0.147 4.147 15 C -0.150 4.150 16 C -0.134 4.134 17 C -0.107 4.107 18 C -0.125 4.125 19 C 0.034 3.966 20 H 0.122 0.878 21 N -0.360 5.360 22 C 0.303 3.697 23 O -0.419 6.419 24 C -0.178 4.178 25 C -0.062 4.062 26 C -0.057 4.057 27 C -0.230 4.230 28 C -0.232 4.232 29 C -0.116 4.116 30 O -0.073 6.073 31 H 0.067 0.933 32 H 0.222 0.778 33 H 0.145 0.855 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.236 0.764 40 H 0.114 0.886 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.108 0.892 44 H 0.167 0.833 45 H 0.164 0.836 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 4.315 -15.630 8.592 18.350 hybrid contribution 0.604 1.330 0.262 1.484 sum 4.919 -14.300 8.853 17.523 Atomic orbital electron populations 1.69655 1.05142 1.26000 1.56493 1.24757 0.95448 0.97693 1.02418 0.86302 0.78575 0.83589 0.77885 1.21179 1.21662 1.21198 1.19140 0.90887 0.83835 1.43919 0.91120 1.42403 1.05760 0.99117 1.87703 1.19943 0.94597 0.86387 0.89554 0.91426 1.21678 0.96336 0.93250 0.98342 1.20783 0.97240 1.00403 0.91386 1.21044 1.01549 0.94713 0.97442 1.20875 1.01571 0.94574 0.97965 1.20463 1.01618 0.99178 0.92133 1.20447 1.00782 0.95093 0.94402 1.21338 1.00823 0.97916 0.92412 1.21924 1.01582 0.94049 0.79061 0.87752 1.45866 1.17147 1.63964 1.09057 1.20462 0.84471 0.76911 0.87885 1.90711 1.22653 1.50563 1.78020 1.21661 0.99816 1.03789 0.92504 1.19859 0.98068 1.03527 0.84726 1.22524 1.01256 0.85489 0.96384 1.21676 1.07657 1.01542 0.92109 1.21854 1.05660 0.95829 0.99874 1.24001 1.05918 0.99521 0.82156 1.84023 1.63274 1.38225 1.21769 0.93272 0.77796 0.85477 0.86631 0.86774 0.87131 0.90368 0.90784 0.76438 0.88638 0.88179 0.87808 0.89249 0.83308 0.83559 0.78276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.20 13.06 55.49 0.72 -26.48 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.25 -6.41 9.70 -15.06 -0.15 -6.56 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 9 N -0.71 -16.83 5.14 -53.54 -0.28 -17.10 16 10 C 0.21 3.89 3.23 -68.05 -0.22 3.68 16 11 H 0.07 1.23 7.75 -51.93 -0.40 0.83 16 12 C -0.09 -1.70 5.79 -104.21 -0.60 -2.30 16 13 C -0.08 -1.48 10.00 -39.54 -0.40 -1.87 16 14 C -0.13 -2.04 10.05 -39.63 -0.40 -2.44 16 15 C -0.13 -1.89 10.05 -39.63 -0.40 -2.29 16 16 C -0.12 -1.71 10.04 -39.54 -0.40 -2.11 16 17 C -0.11 -1.73 6.14 -104.21 -0.64 -2.37 16 18 C -0.09 -1.27 6.49 -26.85 -0.17 -1.44 16 19 C 0.14 2.31 3.13 -66.53 -0.21 2.11 16 20 H 0.10 2.04 7.22 -51.93 -0.37 1.67 16 21 N -0.71 -9.83 5.14 -52.45 -0.27 -10.10 16 22 C 0.52 7.29 7.83 -10.98 -0.09 7.20 16 23 O -0.54 -9.64 15.63 5.55 0.09 -9.56 16 24 C -0.14 -1.43 5.68 -27.88 -0.16 -1.59 16 25 C -0.02 -0.26 5.04 -27.88 -0.14 -0.40 16 26 C -0.01 -0.07 6.57 -35.63 -0.23 -0.30 16 27 C -0.21 -2.22 10.81 -39.70 -0.43 -2.65 16 28 C -0.21 -1.97 10.91 -39.70 -0.43 -2.41 16 29 C -0.05 -0.42 12.09 29.42 0.36 -0.07 16 30 O -0.18 -1.94 10.65 5.71 0.06 -1.88 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.39 10.15 7.61 -40.82 -0.31 9.84 16 33 H 0.13 2.55 7.80 -52.49 -0.41 2.14 16 34 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 35 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 36 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 37 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.40 4.59 8.43 -40.82 -0.34 4.25 16 40 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 41 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.10 1.16 8.10 -51.93 -0.42 0.74 16 43 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 44 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 45 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 46 H 0.20 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 391.51 15.07 5.90 5.90 Total: -1.00 -32.18 391.51 -10.05 -42.23 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -6.45 Total: 16.52 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -4.80 Total: -16.08 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.18 Total: -53.68 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.15 Total: -11.44 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.18 -10.05 -42.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328673971.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.279 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds