Wall clock time and date at job start Sat Apr 11 2020 06:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99785 * 2 1 4 4 H 1.48502 * 109.47044 * 239.99524 * 3 2 1 5 5 H 1.48499 * 109.47250 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47229 * 120.00084 * 3 2 1 7 7 C 1.38815 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99780 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99844 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99809 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.26679 * 32.92297 * 10 9 7 12 12 C 1.51368 * 110.38587 * 270.79496 * 10 9 7 13 13 C 1.38495 * 130.39729 * 43.87937 * 12 10 9 14 14 C 1.38099 * 120.21582 * 180.02562 * 13 12 10 15 15 C 1.38249 * 119.93798 * 359.97438 * 14 13 12 16 16 C 1.38103 * 119.93233 * 359.97438 * 15 14 13 17 17 C 1.38219 * 109.75322 * 223.85377 * 12 10 9 18 18 C 1.51363 * 109.76531 * 359.97438 * 17 12 10 19 19 C 1.54345 * 105.17102 * 17.18970 * 18 17 12 20 20 H 1.09000 * 110.99329 * 91.95180 * 19 18 17 21 21 N 1.46497 * 110.82505 * 215.43347 * 19 18 17 22 22 C 1.34777 * 119.99525 * 267.96840 * 21 19 18 23 23 O 1.21283 * 120.00463 * 0.02562 * 22 21 19 24 24 C 1.50700 * 119.99675 * 179.72583 * 22 21 19 25 25 C 1.53004 * 109.47208 * 180.27843 * 24 22 21 26 26 C 1.50700 * 109.47208 * 180.02562 * 25 24 22 27 27 C 1.34512 * 125.79055 * 89.71801 * 26 25 24 28 28 C 1.41381 * 106.84049 * 179.89028 * 27 26 25 29 29 C 1.34516 * 106.83908 * 0.36840 * 28 27 26 30 30 O 1.34299 * 108.42346 * 359.77594 * 29 28 27 31 31 H 0.96993 * 119.99993 * 0.02562 * 1 2 3 32 32 H 0.96994 * 120.00068 * 359.97438 * 9 7 2 33 33 H 1.08002 * 119.89047 * 359.95052 * 13 12 10 34 34 H 1.08003 * 120.03169 * 179.97438 * 14 13 12 35 35 H 1.08004 * 120.03597 * 179.97438 * 15 14 13 36 36 H 1.08004 * 119.88895 * 180.02562 * 16 15 14 37 37 H 1.09005 * 110.30221 * 258.27368 * 18 17 12 38 38 H 1.08994 * 110.30733 * 136.11727 * 18 17 12 39 39 H 0.97000 * 120.00580 * 87.97586 * 21 19 18 40 40 H 1.09009 * 109.47352 * 300.27556 * 24 22 21 41 41 H 1.08998 * 109.47585 * 60.27844 * 24 22 21 42 42 H 1.09000 * 109.46887 * 300.00372 * 25 24 22 43 43 H 1.08998 * 109.46846 * 59.99549 * 25 24 22 44 44 H 1.07998 * 126.57723 * 0.02562 * 27 26 25 45 45 H 1.07997 * 126.57749 * 180.16195 * 28 27 26 46 46 H 1.08002 * 125.78761 * 179.79182 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9902 -3.5546 0.5563 12 6 2.3388 -4.1036 -1.4182 13 6 2.7851 -3.3840 -2.5141 14 6 2.9719 -4.0130 -3.7293 15 6 2.7132 -5.3654 -3.8532 16 6 2.2691 -6.0849 -2.7612 17 6 2.0807 -5.4558 -1.5418 18 6 1.6096 -6.0104 -0.2146 19 6 1.1904 -4.7768 0.6128 20 1 0.1301 -4.5604 0.4815 21 7 1.5093 -4.9672 2.0299 22 6 0.5886 -5.4908 2.8633 23 8 -0.5037 -5.8049 2.4400 24 6 0.9187 -5.6925 4.3198 25 6 -0.2874 -6.3029 5.0364 26 6 0.0425 -6.5040 6.4930 27 6 -0.1543 -5.6064 7.4754 28 6 0.2914 -6.2076 8.6748 29 6 0.7415 -7.4335 8.3524 30 8 0.5884 -7.6076 7.0296 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 0.0005 33 1 2.9866 -2.3273 -2.4184 34 1 3.3197 -3.4488 -4.5821 35 1 2.8584 -5.8588 -4.8029 36 1 2.0676 -7.1415 -2.8587 37 1 2.4212 -6.5414 0.2830 38 1 0.7575 -6.6737 -0.3628 39 1 2.3830 -4.7163 2.3684 40 1 1.7727 -6.3641 4.4092 41 1 1.1629 -4.7319 4.7734 42 1 -1.1413 -5.6314 4.9469 43 1 -0.5316 -7.2635 4.5828 44 1 -0.5745 -4.6172 7.3686 45 1 0.2766 -5.7659 9.6603 46 1 1.1556 -8.1555 9.0407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328673971.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:51 Heat of formation + Delta-G solvation = -6.058696 kcal Electronic energy + Delta-G solvation = -28317.618333 eV Core-core repulsion = 24365.869175 eV Total energy + Delta-G solvation = -3951.749158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.45466 -41.46670 -40.29440 -37.54003 -35.74504 -35.02903 -34.08690 -33.64758 -32.87469 -31.24436 -30.13691 -28.76318 -27.64352 -25.68639 -24.89068 -23.21129 -22.63526 -21.91141 -21.71919 -21.32243 -21.01053 -19.24950 -18.57604 -17.79641 -17.45366 -17.13750 -16.80617 -16.66238 -16.49590 -16.02286 -15.77697 -15.39786 -15.16159 -15.00262 -14.77794 -14.40024 -14.11286 -13.84791 -13.79165 -13.71420 -13.54295 -13.45084 -13.28923 -13.17359 -12.99684 -12.80124 -12.67445 -12.26573 -12.22341 -12.05236 -12.00358 -11.79845 -11.58753 -11.07033 -10.91437 -10.80745 -10.09485 -9.60455 -9.38101 -9.35595 -9.05855 -7.93955 -5.23859 0.53599 0.60787 0.81075 1.46773 1.48813 1.54933 1.65331 1.71855 2.02828 2.30925 2.55098 2.94890 3.37531 3.46528 3.64472 3.74291 3.90205 4.06247 4.09320 4.10797 4.15203 4.18115 4.21844 4.30707 4.35778 4.36488 4.41932 4.59151 4.68066 4.77395 4.79685 4.86704 4.96410 4.97189 4.99519 5.04154 5.10064 5.21329 5.27710 5.32448 5.49280 5.51436 5.63900 5.66252 5.73357 5.90182 6.21689 6.24522 6.26646 6.57382 7.27461 7.31630 8.02019 8.27336 9.28903 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009172 B = 0.002918 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3052.060080 B = 9592.485515 C =12111.228540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.071 4.071 3 Si 0.968 3.032 4 H -0.279 1.279 5 H -0.300 1.300 6 H -0.275 1.275 7 C -0.233 4.233 8 H 0.078 0.922 9 N -0.722 5.722 10 C 0.206 3.794 11 H 0.074 0.926 12 C -0.120 4.120 13 C -0.108 4.108 14 C -0.132 4.132 15 C -0.122 4.122 16 C -0.114 4.114 17 C -0.109 4.109 18 C -0.074 4.074 19 C 0.148 3.852 20 H 0.069 0.931 21 N -0.704 5.704 22 C 0.514 3.486 23 O -0.583 6.583 24 C -0.124 4.124 25 C -0.019 4.019 26 C -0.023 4.023 27 C -0.222 4.222 28 C -0.229 4.229 29 C -0.042 4.042 30 O -0.190 6.190 31 H 0.249 0.751 32 H 0.370 0.630 33 H 0.099 0.901 34 H 0.136 0.864 35 H 0.152 0.848 36 H 0.143 0.857 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.415 0.585 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.152 0.848 45 H 0.166 0.834 46 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.090 -17.619 9.336 21.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.263 4.263 3 Si 0.797 3.203 4 H -0.205 1.205 5 H -0.227 1.227 6 H -0.201 1.201 7 C -0.364 4.364 8 H 0.096 0.904 9 N -0.360 5.360 10 C 0.096 3.904 11 H 0.091 0.909 12 C -0.123 4.123 13 C -0.126 4.126 14 C -0.150 4.150 15 C -0.140 4.140 16 C -0.132 4.132 17 C -0.110 4.110 18 C -0.112 4.112 19 C 0.041 3.959 20 H 0.087 0.913 21 N -0.355 5.355 22 C 0.302 3.698 23 O -0.463 6.463 24 C -0.164 4.164 25 C -0.057 4.057 26 C -0.072 4.072 27 C -0.241 4.241 28 C -0.248 4.248 29 C -0.109 4.109 30 O -0.087 6.087 31 H 0.058 0.942 32 H 0.202 0.798 33 H 0.117 0.883 34 H 0.154 0.846 35 H 0.170 0.830 36 H 0.161 0.839 37 H 0.122 0.878 38 H 0.096 0.904 39 H 0.252 0.748 40 H 0.139 0.861 41 H 0.129 0.871 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.170 0.830 45 H 0.183 0.817 46 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 6.538 -17.930 8.915 21.065 hybrid contribution -0.019 1.906 0.143 1.911 sum 6.518 -16.025 9.058 19.528 Atomic orbital electron populations 1.69826 1.06726 1.25995 1.59372 1.25506 0.96152 1.00917 1.03765 0.85296 0.77200 0.79523 0.78252 1.20520 1.22677 1.20125 1.19489 0.91251 0.84708 1.40957 0.90401 1.42538 1.05066 1.00450 1.87976 1.20128 0.94560 0.85073 0.90643 0.90852 1.21538 0.98446 0.94714 0.97649 1.20753 0.99378 0.99382 0.93096 1.21298 1.01067 0.95827 0.96841 1.21316 0.99512 0.93784 0.99412 1.20881 1.00224 1.00832 0.91265 1.20652 1.00448 0.94156 0.95735 1.21263 1.01683 0.96797 0.91494 1.21593 0.99044 0.94354 0.80864 0.91324 1.45797 1.17866 1.63738 1.08061 1.21116 0.83643 0.75806 0.89192 1.90695 1.24339 1.52302 1.78956 1.21625 1.00472 1.04950 0.89354 1.19727 0.97872 1.02956 0.85135 1.22438 1.02551 0.85954 0.96301 1.21927 1.07537 1.01804 0.92858 1.22174 1.05982 0.96278 1.00334 1.24789 1.04471 1.00041 0.81573 1.84015 1.63495 1.38255 1.22959 0.94173 0.79764 0.88326 0.84628 0.83039 0.83896 0.87839 0.90367 0.74845 0.86062 0.87072 0.88969 0.89836 0.83029 0.81653 0.74599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.35 13.06 21.65 0.28 -59.07 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 3 Si 0.97 45.43 29.55 68.60 2.03 47.46 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.23 -12.39 9.70 84.03 0.81 -11.58 16 8 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.72 -35.61 5.14 -323.32 -1.66 -37.28 16 10 C 0.21 7.89 3.23 44.91 0.14 8.03 16 11 H 0.07 2.69 7.75 -2.39 -0.02 2.67 16 12 C -0.12 -4.44 5.79 -19.60 -0.11 -4.56 16 13 C -0.11 -4.03 10.00 22.30 0.22 -3.81 16 14 C -0.13 -3.97 10.05 22.24 0.22 -3.75 16 15 C -0.12 -3.10 10.05 22.24 0.22 -2.88 16 16 C -0.11 -2.99 10.04 22.30 0.22 -2.77 16 17 C -0.11 -3.37 6.14 -19.60 -0.12 -3.49 16 18 C -0.07 -2.06 6.49 30.52 0.20 -1.86 16 19 C 0.15 4.97 3.13 45.90 0.14 5.11 16 20 H 0.07 2.83 7.22 -2.39 -0.02 2.82 16 21 N -0.70 -19.21 5.14 -438.23 -2.25 -21.47 16 22 C 0.51 14.45 7.83 87.66 0.69 15.14 16 23 O -0.58 -21.29 15.63 -3.04 -0.05 -21.34 16 24 C -0.12 -2.46 5.68 29.85 0.17 -2.29 16 25 C -0.02 -0.41 5.04 29.85 0.15 -0.26 16 26 C -0.02 -0.48 6.57 24.83 0.16 -0.32 16 27 C -0.22 -4.52 10.81 22.19 0.24 -4.28 16 28 C -0.23 -3.84 10.91 22.19 0.24 -3.60 16 29 C -0.04 -0.63 12.09 66.97 0.81 0.18 16 30 O -0.19 -3.91 10.65 -2.48 -0.03 -3.93 16 31 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 32 H 0.37 20.54 7.61 -92.71 -0.71 19.84 16 33 H 0.10 4.15 7.80 -2.91 -0.02 4.13 16 34 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 35 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 37 H 0.10 2.37 8.08 -2.38 -0.02 2.36 16 38 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.41 9.02 8.43 -92.71 -0.78 8.23 16 40 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 41 H 0.11 1.99 8.14 -2.39 -0.02 1.98 16 42 H 0.09 2.16 8.10 -2.39 -0.02 2.14 16 43 H 0.08 1.87 8.10 -2.39 -0.02 1.85 16 44 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 45 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 46 H 0.24 1.44 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -72.94 391.51 2.74 -70.20 By element: Atomic # 1 Polarization: 46.40 SS G_CDS: -0.47 Total: 45.92 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: 4.89 Total: -20.50 kcal Atomic # 7 Polarization: -114.18 SS G_CDS: -3.63 Total: -117.81 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.07 Total: -25.27 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -72.94 2.74 -70.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328673971.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.144 kcal (2) G-P(sol) polarization free energy of solvation -72.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds