Wall clock time and date at job start Sat Apr 11 2020 06:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30814 * 1 3 3 Si 1.86800 * 119.99915 * 2 1 4 4 H 1.48504 * 109.47326 * 269.99801 * 3 2 1 5 5 H 1.48497 * 109.47077 * 29.99809 * 3 2 1 6 6 H 1.48504 * 109.47271 * 149.99826 * 3 2 1 7 7 C 1.39949 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99946 * 193.19075 * 7 2 1 9 9 C 1.41398 * 119.99871 * 13.19342 * 7 2 1 10 10 C 1.40445 * 119.96647 * 26.98245 * 9 7 2 11 11 C 1.37606 * 119.53965 * 180.24162 * 10 9 7 12 12 C 1.38371 * 119.98714 * 0.57033 * 11 10 9 13 13 C 1.39251 * 121.04821 * 359.21150 * 12 11 10 14 14 C 1.37083 * 119.98713 * 0.14876 * 13 12 11 15 15 C 1.50571 * 122.99994 * 180.92588 * 14 13 12 16 16 C 1.52802 * 110.86903 * 339.88366 * 15 14 13 17 17 N 1.47242 * 107.84263 * 47.39754 * 16 15 14 18 18 C 1.34773 * 121.34388 * 115.90796 * 17 16 15 19 19 O 1.21348 * 120.00460 * 352.90086 * 18 17 16 20 20 C 1.49451 * 119.99610 * 172.90224 * 18 17 16 21 21 O 1.21348 * 120.00079 * 353.74844 * 20 18 17 22 22 N 1.34779 * 119.99808 * 173.74345 * 20 18 17 23 23 C 1.46499 * 119.99824 * 179.97438 * 22 20 18 24 24 H 1.08994 * 110.35001 * 324.17120 * 23 22 20 25 25 C 1.51106 * 110.38707 * 86.46008 * 23 22 20 26 26 C 1.30527 * 111.10726 * 102.37147 * 25 23 22 27 27 C 1.51101 * 111.10136 * 0.02562 * 26 25 23 28 28 C 1.54633 * 104.72806 * 16.43442 * 27 26 25 29 29 C 1.46665 * 117.30429 * 295.92492 * 17 16 15 30 30 H 0.96998 * 120.00512 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.22855 * 0.48034 * 10 9 7 32 32 H 1.08001 * 120.00582 * 180.33454 * 11 10 9 33 33 H 1.08002 * 119.47786 * 179.49108 * 12 11 10 34 34 H 1.08993 * 109.20166 * 219.52141 * 15 14 13 35 35 H 1.09005 * 109.19927 * 100.23349 * 15 14 13 36 36 H 1.08997 * 109.78335 * 287.80887 * 16 15 14 37 37 H 1.09004 * 109.83251 * 167.01028 * 16 15 14 38 38 H 0.96994 * 119.99904 * 0.02562 * 22 20 18 39 39 H 1.08003 * 124.44392 * 282.39785 * 25 23 22 40 40 H 1.07994 * 124.44823 * 180.02562 * 26 25 23 41 41 H 1.08994 * 110.38553 * 135.24693 * 27 26 25 42 42 H 1.08998 * 110.38386 * 257.62241 * 27 26 25 43 43 H 1.09005 * 111.03852 * 217.33466 * 28 27 26 44 44 H 1.09005 * 111.03789 * 93.39946 * 28 27 26 45 45 H 1.09004 * 109.43033 * 284.23155 * 29 17 16 46 46 H 1.09002 * 109.42801 * 164.39565 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4395 2.6527 0.7000 6 1 3.5397 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0666 -1.2241 0.2140 9 6 1.3290 -2.4205 -0.2784 10 6 0.1746 -2.4081 -1.0783 11 6 -0.4820 -3.5887 -1.3400 12 6 -0.0107 -4.7752 -0.8066 13 6 1.1350 -4.8020 -0.0156 14 6 1.8131 -3.6401 0.2478 15 6 3.0692 -3.5935 1.0768 16 6 3.1891 -4.8391 1.9537 17 7 2.9210 -6.0140 1.1077 18 6 3.8718 -6.9395 0.8715 19 8 5.0091 -6.7516 1.2508 20 6 3.5255 -8.1973 0.1424 21 8 2.3694 -8.4380 -0.1370 22 7 4.4973 -9.0642 -0.2050 23 6 4.1578 -10.2974 -0.9192 24 1 3.2025 -10.6878 -0.5685 25 6 4.1090 -10.0467 -2.4085 26 6 5.1879 -10.4890 -2.9952 27 6 6.1358 -11.1090 -1.9950 28 6 5.2734 -11.3524 -0.7347 29 6 1.5776 -6.1361 0.5321 30 1 -0.4851 0.8400 -0.0004 31 1 -0.1929 -1.4789 -1.4882 32 1 -1.3673 -3.5886 -1.9586 33 1 -0.5373 -5.6959 -1.0106 34 1 3.0465 -2.7085 1.7125 35 1 3.9335 -3.5366 0.4151 36 1 2.4598 -4.7926 2.7624 37 1 4.1954 -4.9044 2.3677 38 1 5.4213 -8.8719 0.0186 39 1 3.2893 -9.5645 -2.9203 40 1 5.3781 -10.4208 -4.0561 41 1 6.5260 -12.0526 -2.3761 42 1 6.9521 -10.4228 -1.7698 43 1 5.8453 -11.1620 0.1735 44 1 4.8615 -12.3616 -0.7314 45 1 0.8802 -6.4603 1.3046 46 1 1.5933 -6.8713 -0.2725 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332794141.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:04 Heat of formation + Delta-G solvation = -18.760469 kcal Electronic energy + Delta-G solvation = -29189.564941 eV Core-core repulsion = 25237.264992 eV Total energy + Delta-G solvation = -3952.299948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.88243 -39.46063 -38.23424 -37.77763 -35.70186 -33.77134 -33.61972 -31.92806 -30.13074 -29.37377 -28.94211 -27.93490 -25.61970 -25.08023 -23.97589 -22.48639 -21.07599 -20.65950 -20.27870 -19.08803 -18.86178 -17.46115 -17.02044 -16.82965 -16.30818 -15.93471 -15.83782 -15.28546 -14.96704 -14.54027 -14.38510 -14.16550 -13.99472 -13.43084 -13.38752 -12.98689 -12.64262 -12.55559 -12.42206 -12.32463 -11.91380 -11.83064 -11.74588 -11.61044 -11.48825 -11.43666 -11.23394 -11.19132 -10.91367 -10.84642 -10.46216 -10.16313 -9.81370 -9.49849 -9.39262 -9.28667 -9.21923 -9.01514 -8.37617 -7.29802 -7.22262 -6.73702 -4.38970 1.52828 1.80921 2.57307 2.76017 2.90458 3.06353 3.09375 3.19368 3.32717 3.67500 3.91846 4.16276 4.29052 4.44970 4.60478 4.72728 4.95277 5.06725 5.34881 5.43388 5.45599 5.47570 5.50323 5.62919 5.68518 5.75600 5.79723 5.90287 5.97786 6.06480 6.20980 6.24564 6.35724 6.42982 6.47453 6.53171 6.67319 6.76103 6.87850 7.05327 7.08559 7.20958 7.34602 7.52088 7.60460 7.80348 7.88358 8.03253 8.06287 8.13156 8.25647 8.61606 8.87238 8.95188 10.19399 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018384 B = 0.002654 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.675223 B =10547.659923 C =10942.910552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.079 0.921 9 C 0.111 3.889 10 C -0.161 4.161 11 C -0.105 4.105 12 C -0.230 4.230 13 C -0.078 4.078 14 C -0.178 4.178 15 C -0.067 4.067 16 C 0.110 3.890 17 N -0.567 5.567 18 C 0.506 3.494 19 O -0.537 6.537 20 C 0.511 3.489 21 O -0.508 6.508 22 N -0.694 5.694 23 C 0.162 3.838 24 H 0.098 0.902 25 C -0.175 4.175 26 C -0.151 4.151 27 C -0.106 4.106 28 C -0.132 4.132 29 C 0.132 3.868 30 H 0.279 0.721 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.411 0.589 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.373 -16.956 -1.009 18.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.490 4.490 8 H 0.097 0.903 9 C 0.109 3.891 10 C -0.181 4.181 11 C -0.123 4.123 12 C -0.250 4.250 13 C -0.078 4.078 14 C -0.180 4.180 15 C -0.105 4.105 16 C -0.012 4.012 17 N -0.298 5.298 18 C 0.288 3.712 19 O -0.415 6.415 20 C 0.293 3.707 21 O -0.383 6.383 22 N -0.347 5.347 23 C 0.058 3.942 24 H 0.116 0.884 25 C -0.194 4.194 26 C -0.170 4.170 27 C -0.143 4.143 28 C -0.170 4.170 29 C 0.011 3.989 30 H 0.090 0.910 31 H 0.137 0.863 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.247 0.753 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.929 -16.859 -0.951 18.655 hybrid contribution 0.462 1.098 -0.061 1.192 sum 8.391 -15.761 -1.012 17.884 Atomic orbital electron populations 1.69804 1.07471 1.29032 1.35952 1.25892 0.94763 1.01200 0.92387 0.86320 0.80447 0.80737 0.79268 1.19391 1.20351 1.18611 1.19584 0.96585 0.90570 1.42252 0.90319 1.17589 0.91550 0.91347 0.88642 1.21293 0.98789 0.96678 1.01327 1.20607 0.98577 0.93395 0.99734 1.20183 1.00028 0.96839 1.07934 1.19186 0.96581 0.92547 0.99503 1.19233 0.99740 0.93162 1.05822 1.20414 0.96488 0.96137 0.97443 1.21898 1.02109 0.84212 0.92942 1.47996 1.12868 1.21908 1.47070 1.19863 0.85266 0.84578 0.81459 1.90710 1.19340 1.78620 1.52874 1.20324 0.85696 0.84981 0.79719 1.90623 1.18961 1.74849 1.53881 1.45829 1.10989 1.20849 1.57030 1.20817 0.99838 0.83765 0.89803 0.88403 1.23612 0.99276 1.01068 0.95404 1.23374 0.95265 0.98905 0.99461 1.21459 0.98015 1.00966 0.93870 1.22748 0.96518 0.98927 0.98798 1.21308 0.80627 0.97655 0.99301 0.90964 0.86274 0.89319 0.89308 0.89840 0.92584 0.90677 0.89393 0.75254 0.85339 0.85473 0.90594 0.90321 0.89855 0.89318 0.91273 0.85878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.30 10.84 55.55 0.60 -19.70 16 2 C 0.07 1.84 5.21 -17.34 -0.09 1.75 16 3 Si 0.91 18.49 29.58 -169.99 -5.03 13.46 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.46 -11.77 8.01 -37.74 -0.30 -12.08 16 8 H 0.08 1.94 6.87 -52.48 -0.36 1.58 16 9 C 0.11 2.88 5.58 -106.67 -0.59 2.28 16 10 C -0.16 -4.16 8.64 -38.98 -0.34 -4.50 16 11 C -0.10 -2.45 10.03 -39.76 -0.40 -2.85 16 12 C -0.23 -5.12 9.62 -39.16 -0.38 -5.50 16 13 C -0.08 -1.71 5.82 -104.59 -0.61 -2.32 16 14 C -0.18 -4.18 5.82 -103.91 -0.60 -4.78 16 15 C -0.07 -1.37 4.95 -28.05 -0.14 -1.51 16 16 C 0.11 1.93 6.43 -3.74 -0.02 1.90 16 17 N -0.57 -10.17 2.94 -174.86 -0.51 -10.68 16 18 C 0.51 8.58 7.77 -11.59 -0.09 8.49 16 19 O -0.54 -9.60 16.01 5.50 0.09 -9.52 16 20 C 0.51 7.64 7.73 -11.58 -0.09 7.55 16 21 O -0.51 -8.39 12.98 5.50 0.07 -8.32 16 22 N -0.69 -7.99 5.11 -54.32 -0.28 -8.27 16 23 C 0.16 1.56 3.20 -68.02 -0.22 1.34 16 24 H 0.10 1.02 7.65 -51.93 -0.40 0.62 16 25 C -0.17 -1.73 10.39 -35.70 -0.37 -2.10 16 26 C -0.15 -1.22 10.78 -35.70 -0.38 -1.61 16 27 C -0.11 -0.69 6.81 -26.83 -0.18 -0.87 16 28 C -0.13 -0.87 6.79 -25.00 -0.17 -1.04 16 29 C 0.13 2.47 5.56 -5.03 -0.03 2.45 16 30 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 31 H 0.12 3.18 6.17 -52.48 -0.32 2.85 16 32 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 33 H 0.09 1.78 8.05 -52.49 -0.42 1.35 16 34 H 0.08 1.70 7.04 -51.93 -0.37 1.34 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.09 1.45 7.11 -51.93 -0.37 1.08 16 38 H 0.41 4.27 8.06 -40.82 -0.33 3.94 16 39 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 40 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.49 8.03 -51.93 -0.42 0.08 16 44 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.12 2.31 4.80 -52.61 -0.25 2.06 16 LS Contribution 373.00 15.07 5.62 5.62 Total: -1.00 -28.87 373.00 -10.62 -39.49 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -6.18 Total: 11.31 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -5.01 Total: -13.40 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: -0.19 Total: -38.65 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.16 Total: -17.83 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.87 -10.62 -39.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332794141.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.727 kcal (2) G-P(sol) polarization free energy of solvation -28.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds