Wall clock time and date at job start Sat Apr 11 2020 06:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86795 * 120.00029 * 2 1 4 4 H 1.48495 * 109.47359 * 274.99827 * 3 2 1 5 5 H 1.48500 * 109.47241 * 34.99602 * 3 2 1 6 6 H 1.48501 * 109.47417 * 154.99239 * 3 2 1 7 7 C 1.39949 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99778 * 147.14635 * 7 2 1 9 9 C 1.41402 * 119.99840 * 327.15443 * 7 2 1 10 10 C 1.40437 * 119.96649 * 340.69539 * 9 7 2 11 11 C 1.37603 * 119.53876 * 180.22196 * 10 9 7 12 12 C 1.38372 * 119.99280 * 0.17677 * 11 10 9 13 13 C 1.39246 * 121.04808 * 359.92262 * 12 11 10 14 14 C 1.37090 * 119.98409 * 359.53537 * 13 12 11 15 15 C 1.50569 * 122.99233 * 180.97175 * 14 13 12 16 16 C 1.52786 * 110.87589 * 339.69291 * 15 14 13 17 17 N 1.47234 * 107.85392 * 47.40977 * 16 15 14 18 18 C 1.34780 * 121.34161 * 115.96138 * 17 16 15 19 19 O 1.21347 * 120.00001 * 353.17438 * 18 17 16 20 20 C 1.49454 * 120.00132 * 173.17311 * 18 17 16 21 21 O 1.21344 * 119.99861 * 353.71993 * 20 18 17 22 22 N 1.34778 * 119.99731 * 173.71527 * 20 18 17 23 23 C 1.46498 * 119.99540 * 179.97438 * 22 20 18 24 24 H 1.09000 * 110.34736 * 35.84362 * 23 22 20 25 25 C 1.51101 * 110.39158 * 273.54776 * 23 22 20 26 26 C 1.30527 * 111.10786 * 224.75317 * 25 23 22 27 27 C 1.51103 * 111.10106 * 0.02562 * 26 25 23 28 28 C 1.54632 * 104.72869 * 16.43564 * 27 26 25 29 29 C 1.46669 * 117.32265 * 295.98090 * 17 16 15 30 30 H 0.97002 * 120.00060 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.23190 * 0.19936 * 10 9 7 32 32 H 1.08008 * 120.00329 * 180.19171 * 11 10 9 33 33 H 1.07994 * 119.47913 * 179.97438 * 12 11 10 34 34 H 1.09005 * 109.19708 * 100.05292 * 15 14 13 35 35 H 1.09002 * 109.20251 * 219.33187 * 15 14 13 36 36 H 1.09005 * 109.78529 * 166.99216 * 16 15 14 37 37 H 1.08998 * 109.78682 * 287.81840 * 16 15 14 38 38 H 0.96998 * 119.99756 * 0.02562 * 22 20 18 39 39 H 1.07998 * 124.44053 * 44.73779 * 25 23 22 40 40 H 1.07997 * 124.44458 * 180.02562 * 26 25 23 41 41 H 1.09004 * 110.38333 * 135.25121 * 27 26 25 42 42 H 1.09000 * 110.38260 * 257.62171 * 27 26 25 43 43 H 1.08996 * 111.03826 * 217.33638 * 28 27 26 44 44 H 1.08996 * 111.03953 * 93.39699 * 28 27 26 45 45 H 1.08995 * 109.43113 * 284.27661 * 29 17 16 46 46 H 1.08999 * 109.42651 * 164.42616 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3841 2.1074 -1.3947 5 1 1.4964 2.6199 0.8030 6 1 3.5885 1.4120 0.5919 7 6 2.0080 -1.2120 0.0005 8 1 2.9584 -1.2869 -0.5068 9 6 1.4705 -2.3384 0.6652 10 6 0.4779 -2.1678 1.6439 11 6 -0.0357 -3.2697 2.2885 12 6 0.4289 -4.5344 1.9734 13 6 1.4141 -4.7173 1.0065 14 6 1.9326 -3.6352 0.3435 15 6 2.9835 -3.7565 -0.7280 16 6 3.7213 -5.0899 -0.6184 17 7 2.7134 -6.1525 -0.4674 18 6 2.5592 -7.1106 -1.4028 19 8 3.1696 -7.0407 -2.4492 20 6 1.6365 -8.2590 -1.1512 21 8 1.1142 -8.3907 -0.0639 22 7 1.3845 -9.1483 -2.1321 23 6 0.4805 -10.2744 -1.8853 24 1 -0.3330 -9.9700 -1.2267 25 6 1.2378 -11.4356 -1.2844 26 6 0.9042 -12.5606 -1.8560 27 6 -0.1309 -12.3371 -2.9339 28 6 -0.0782 -10.8186 -3.2208 29 6 1.8834 -6.1263 0.7416 30 1 -0.4850 0.8401 -0.0004 31 1 0.1204 -1.1787 1.8892 32 1 -0.8016 -3.1474 3.0403 33 1 0.0202 -5.3934 2.4847 34 1 2.5074 -3.6897 -1.7063 35 1 3.6992 -2.9412 -0.6221 36 1 4.3071 -5.2628 -1.5212 37 1 4.3779 -5.0779 0.2516 38 1 1.8023 -9.0431 -3.0012 39 1 1.9605 -11.3464 -0.4868 40 1 1.3141 -13.5246 -1.5930 41 1 0.1260 -12.9021 -3.8300 42 1 -1.1201 -12.6217 -2.5752 43 1 -1.0744 -10.4228 -3.4182 44 1 0.5987 -10.5997 -4.0466 45 1 2.4685 -6.4792 1.5908 46 1 1.0194 -6.7760 0.6023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332794142.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:06 Heat of formation + Delta-G solvation = -18.659738 kcal Electronic energy + Delta-G solvation = -29043.479156 eV Core-core repulsion = 25091.183576 eV Total energy + Delta-G solvation = -3952.295580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.84721 -39.40950 -38.23437 -37.77148 -35.71091 -33.92899 -33.70411 -31.95591 -30.16737 -29.39045 -28.96736 -27.85716 -25.59187 -25.04724 -23.91737 -22.40539 -21.32255 -20.63586 -20.26442 -19.07486 -18.83684 -17.45113 -17.08939 -16.86285 -16.26852 -16.12766 -15.69694 -15.29562 -15.04987 -14.43891 -14.41560 -14.19854 -13.75098 -13.49310 -13.35711 -12.95129 -12.68182 -12.57413 -12.53158 -12.31327 -12.04130 -11.79094 -11.76003 -11.65930 -11.63164 -11.49183 -11.42475 -11.18742 -10.93068 -10.66269 -10.49494 -10.27624 -9.76215 -9.48563 -9.38939 -9.32393 -9.12333 -8.88590 -8.35622 -7.45300 -7.22279 -6.93774 -4.33639 1.54938 1.85102 2.52214 2.74657 2.90968 3.03711 3.06304 3.22276 3.34019 3.65747 3.87137 4.16791 4.29926 4.45609 4.48928 4.69881 4.97117 5.03529 5.32216 5.40828 5.44616 5.47224 5.49863 5.65556 5.65988 5.74211 5.80901 5.89735 6.00356 6.07114 6.16385 6.22677 6.35729 6.43855 6.46277 6.54634 6.66597 6.76459 6.90702 7.03156 7.07607 7.16202 7.31567 7.53490 7.59118 7.81854 7.89673 7.99477 8.07078 8.14913 8.23246 8.57250 8.82605 8.94929 10.01349 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020962 B = 0.002517 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.403275 B =11123.283630 C =11526.898050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.089 3.911 3 Si 0.894 3.106 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.468 4.468 8 H 0.085 0.915 9 C 0.117 3.883 10 C -0.185 4.185 11 C -0.094 4.094 12 C -0.245 4.245 13 C -0.068 4.068 14 C -0.189 4.189 15 C -0.065 4.065 16 C 0.109 3.891 17 N -0.567 5.567 18 C 0.506 3.494 19 O -0.536 6.536 20 C 0.511 3.489 21 O -0.508 6.508 22 N -0.697 5.697 23 C 0.162 3.838 24 H 0.105 0.895 25 C -0.169 4.169 26 C -0.161 4.161 27 C -0.100 4.100 28 C -0.131 4.131 29 C 0.131 3.869 30 H 0.283 0.717 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.412 0.588 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.362 -17.315 -4.449 17.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.133 4.133 3 Si 0.717 3.283 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.496 4.496 8 H 0.103 0.897 9 C 0.115 3.885 10 C -0.204 4.204 11 C -0.112 4.112 12 C -0.265 4.265 13 C -0.068 4.068 14 C -0.190 4.190 15 C -0.103 4.103 16 C -0.012 4.012 17 N -0.298 5.298 18 C 0.288 3.712 19 O -0.415 6.415 20 C 0.292 3.708 21 O -0.384 6.384 22 N -0.350 5.350 23 C 0.058 3.942 24 H 0.122 0.878 25 C -0.188 4.188 26 C -0.179 4.179 27 C -0.137 4.137 28 C -0.168 4.168 29 C 0.010 3.990 30 H 0.094 0.906 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.249 0.751 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.082 -17.204 -4.242 17.752 hybrid contribution 0.402 0.977 -0.155 1.067 sum 1.484 -16.227 -4.397 16.877 Atomic orbital electron populations 1.69940 1.08135 1.29812 1.31118 1.25935 0.94306 1.01496 0.91562 0.86545 0.81529 0.81039 0.79191 1.19491 1.19932 1.18095 1.19576 1.05566 0.93748 1.30684 0.89737 1.17488 0.90090 0.90897 0.90039 1.21006 1.02543 0.97171 0.99727 1.20524 0.98608 0.93274 0.98816 1.20088 1.04773 0.96069 1.05552 1.19175 0.97602 0.92291 0.97780 1.19093 1.04807 0.92533 1.02586 1.20385 0.96997 0.94623 0.98254 1.21896 0.90097 0.86831 1.02398 1.47982 1.35582 1.25312 1.20956 1.19865 0.83510 0.83651 0.84148 1.90712 1.48694 1.77485 1.24596 1.20335 0.82085 0.83578 0.84779 1.90622 1.50365 1.73852 1.23514 1.45878 1.47457 1.25783 1.15853 1.20996 0.91810 0.84359 0.97012 0.87755 1.23599 1.00276 0.94647 1.00263 1.23260 0.98236 0.98479 0.97959 1.21353 0.98788 0.95506 0.98080 1.22806 1.02262 0.95473 0.96308 1.21330 0.95796 0.96972 0.84928 0.90634 0.87555 0.89447 0.89396 0.92220 0.90351 0.89408 0.90817 0.75132 0.85615 0.85492 0.90666 0.90109 0.89714 0.90056 0.91292 0.85801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.39 11.61 55.55 0.65 -18.75 16 2 C 0.09 2.17 4.79 -17.34 -0.08 2.08 16 3 Si 0.89 18.00 29.66 -169.99 -5.04 12.96 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.47 -11.91 8.34 -37.74 -0.31 -12.22 16 8 H 0.08 2.05 6.21 -52.49 -0.33 1.72 16 9 C 0.12 3.04 5.61 -106.67 -0.60 2.44 16 10 C -0.19 -4.76 8.79 -38.99 -0.34 -5.10 16 11 C -0.09 -2.20 10.03 -39.76 -0.40 -2.60 16 12 C -0.25 -5.50 9.63 -39.16 -0.38 -5.88 16 13 C -0.07 -1.50 5.82 -104.59 -0.61 -2.11 16 14 C -0.19 -4.45 5.82 -103.91 -0.60 -5.05 16 15 C -0.07 -1.33 5.24 -28.06 -0.15 -1.47 16 16 C 0.11 1.90 6.43 -3.75 -0.02 1.88 16 17 N -0.57 -10.24 2.94 -174.88 -0.51 -10.76 16 18 C 0.51 8.70 7.77 -11.58 -0.09 8.61 16 19 O -0.54 -9.73 16.01 5.50 0.09 -9.64 16 20 C 0.51 7.75 7.73 -11.58 -0.09 7.66 16 21 O -0.51 -8.53 12.97 5.50 0.07 -8.46 16 22 N -0.70 -8.20 5.14 -54.32 -0.28 -8.48 16 23 C 0.16 1.61 3.20 -68.02 -0.22 1.40 16 24 H 0.10 1.17 7.65 -51.93 -0.40 0.77 16 25 C -0.17 -1.60 10.39 -35.70 -0.37 -1.98 16 26 C -0.16 -1.21 10.78 -35.70 -0.38 -1.60 16 27 C -0.10 -0.63 6.81 -26.83 -0.18 -0.81 16 28 C -0.13 -0.93 6.87 -25.00 -0.17 -1.10 16 29 C 0.13 2.46 5.57 -5.03 -0.03 2.43 16 30 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 31 H 0.11 2.80 6.33 -52.49 -0.33 2.47 16 32 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 33 H 0.09 1.78 8.05 -52.49 -0.42 1.36 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.08 1.55 6.39 -51.93 -0.33 1.22 16 36 H 0.09 1.44 7.11 -51.93 -0.37 1.07 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.41 4.36 7.87 -40.82 -0.32 4.04 16 39 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.53 7.80 -51.93 -0.40 0.13 16 45 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.12 2.36 4.78 -52.71 -0.25 2.11 16 LS Contribution 372.76 15.07 5.62 5.62 Total: -1.00 -28.99 372.76 -10.54 -39.53 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -6.10 Total: 11.40 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -5.03 Total: -13.43 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: -0.15 Total: -37.99 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.16 Total: -18.10 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.04 Total: 12.96 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.99 -10.54 -39.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332794142.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.875 kcal (2) G-P(sol) polarization free energy of solvation -28.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds