Wall clock time and date at job start Sat Apr 11 2020 06:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00365 * 2 1 4 4 H 1.48499 * 109.47678 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47057 * 300.00052 * 3 2 1 6 6 H 1.48511 * 109.47229 * 59.99542 * 3 2 1 7 7 C 1.37880 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00024 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00039 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47040 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46980 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.46796 * 179.97438 * 11 10 9 13 13 C 1.34774 * 119.99774 * 180.02562 * 12 11 10 14 14 O 1.21349 * 120.00092 * 359.97438 * 13 12 11 15 15 C 1.49448 * 120.00372 * 180.02562 * 13 12 11 16 16 O 1.21357 * 119.99446 * 0.02562 * 15 13 12 17 17 N 1.34774 * 120.00372 * 180.02562 * 15 13 12 18 18 C 1.46506 * 119.99970 * 180.02562 * 17 15 13 19 19 H 1.08997 * 109.16928 * 35.66249 * 18 17 15 20 20 C 1.52424 * 109.12200 * 276.34317 * 18 17 15 21 21 C 1.53155 * 110.12975 * 167.18165 * 20 18 17 22 22 S 1.81928 * 108.60659 * 64.61600 * 21 20 18 23 23 C 1.81475 * 101.92300 * 308.47643 * 22 21 20 24 24 C 1.53229 * 113.49377 * 181.10453 * 23 22 21 25 25 C 1.53899 * 86.89690 * 139.78376 * 24 23 22 26 26 C 1.53217 * 113.49870 * 279.18609 * 23 22 21 27 27 C 1.52687 * 112.25676 * 50.13531 * 23 22 21 28 28 H 0.97004 * 119.99985 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47326 * 59.99431 * 9 7 2 30 30 H 1.09008 * 109.46755 * 299.99356 * 9 7 2 31 31 H 1.08995 * 109.47178 * 59.99766 * 10 9 7 32 32 H 1.08998 * 109.47036 * 299.99519 * 10 9 7 33 33 H 1.08998 * 109.46611 * 59.99852 * 11 10 9 34 34 H 1.08998 * 109.47120 * 299.99806 * 11 10 9 35 35 H 0.96996 * 120.00206 * 359.97438 * 12 11 10 36 36 H 0.96996 * 120.00021 * 359.97438 * 17 15 13 37 37 H 1.08999 * 109.37772 * 46.97753 * 20 18 17 38 38 H 1.09001 * 109.25412 * 287.30320 * 20 18 17 39 39 H 1.08999 * 109.61200 * 304.88349 * 21 20 18 40 40 H 1.09000 * 109.61345 * 184.35459 * 21 20 18 41 41 H 1.08999 * 113.64500 * 254.28527 * 24 23 22 42 42 H 1.09008 * 113.64301 * 25.28380 * 24 23 22 43 43 H 1.09008 * 113.59580 * 220.41335 * 25 24 23 44 44 H 1.08996 * 113.67263 * 89.57877 * 25 24 23 45 45 H 1.09008 * 113.64330 * 334.72053 * 26 23 22 46 46 H 1.08998 * 113.64564 * 105.62039 * 26 23 22 47 47 H 1.09002 * 109.42607 * 60.96218 * 27 23 22 48 48 H 1.09002 * 109.42481 * 180.85096 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 7 2.4321 -6.1006 0.0006 13 6 1.9829 -7.3713 0.0005 14 8 0.7898 -7.5930 0.0013 15 6 2.9539 -8.5073 0.0004 16 8 4.1471 -8.2855 0.0009 17 7 2.5046 -9.7780 -0.0002 18 6 3.4567 -10.8915 0.0003 19 1 4.3245 -10.6202 0.6013 20 6 3.9032 -11.1674 -1.4307 21 6 5.1205 -12.0967 -1.4332 22 16 4.6219 -13.7082 -0.7517 23 6 3.8261 -13.2264 0.8064 24 6 3.3186 -14.4169 1.6268 25 6 3.8295 -13.6698 2.8715 26 6 4.8194 -12.9493 1.9396 27 6 2.7890 -12.1233 0.6091 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8904 31 1 2.8719 -3.6044 0.8904 32 1 2.8718 -3.6044 -0.8895 33 1 0.8532 -5.0450 -0.8886 34 1 0.8538 -5.0446 0.8914 35 1 3.3858 -5.9234 -0.0005 36 1 1.5510 -9.9552 -0.0003 37 1 4.1657 -10.2270 -1.9153 38 1 3.0870 -11.6399 -1.9772 39 1 5.9100 -11.6672 -0.8165 40 1 5.4798 -12.2264 -2.4540 41 1 2.2353 -14.5349 1.6018 42 1 3.8518 -15.3459 1.4250 43 1 4.3119 -14.3188 3.6025 44 1 3.0891 -13.0063 3.3183 45 1 5.7700 -13.4703 1.8248 46 1 4.9416 -11.8898 2.1645 47 1 2.0048 -12.4783 -0.0595 48 1 2.3523 -11.8598 1.5725 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354567844.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:29 Heat of formation + Delta-G solvation = -72.685132 kcal Electronic energy + Delta-G solvation = -26699.031163 eV Core-core repulsion = 22879.836817 eV Total energy + Delta-G solvation = -3819.194346 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.96781 -39.96923 -38.64767 -36.70660 -35.65242 -33.50724 -33.08699 -31.28424 -30.31680 -27.47577 -26.45630 -26.33008 -24.44911 -24.09787 -22.69358 -21.29692 -20.82242 -20.35314 -19.34331 -18.54680 -17.39061 -17.14418 -16.39676 -16.11160 -16.02860 -15.72220 -15.31032 -15.11874 -14.99424 -14.46807 -14.41536 -14.22160 -13.92258 -13.65335 -13.39505 -13.18045 -13.09423 -12.88836 -12.34603 -12.20099 -11.99668 -11.92363 -11.84131 -11.80618 -11.62265 -11.18448 -11.04497 -10.95216 -10.79821 -10.62426 -10.60253 -10.09741 -9.94068 -9.82855 -9.61896 -9.41887 -9.14779 -9.03770 -8.40725 -8.09734 -6.05265 -4.08264 1.31565 1.33245 2.03974 2.19461 3.13679 3.28340 3.36034 3.39698 3.49918 3.73350 3.95260 4.13656 4.17967 4.27984 4.35780 4.41633 4.43176 4.51182 4.73207 4.79727 4.93704 5.05501 5.19005 5.20764 5.27343 5.30855 5.31557 5.40193 5.43662 5.49040 5.54786 5.56527 5.64851 5.65762 5.81803 5.90668 6.03826 6.21226 6.50113 6.63754 6.82312 6.91624 7.32457 7.59013 7.62983 7.70194 7.92953 7.98075 8.34191 8.98430 9.56269 11.06009 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028357 B = 0.001652 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.161359 B =16948.426492 C =17149.600983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.690 5.690 13 C 0.500 3.500 14 O -0.525 6.525 15 C 0.511 3.489 16 O -0.518 6.518 17 N -0.700 5.700 18 C 0.140 3.860 19 H 0.094 0.906 20 C -0.134 4.134 21 C -0.077 4.077 22 S -0.255 6.255 23 C -0.044 4.044 24 C -0.107 4.107 25 C -0.137 4.137 26 C -0.128 4.128 27 C -0.107 4.107 28 H 0.261 0.739 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.411 0.589 36 H 0.414 0.586 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.246 -31.764 1.850 32.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.342 5.342 13 C 0.279 3.721 14 O -0.402 6.402 15 C 0.292 3.708 16 O -0.393 6.393 17 N -0.353 5.353 18 C 0.035 3.965 19 H 0.112 0.888 20 C -0.174 4.174 21 C -0.226 4.226 22 S -0.025 6.025 23 C -0.154 4.154 24 C -0.145 4.145 25 C -0.176 4.176 26 C -0.168 4.168 27 C -0.147 4.147 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.247 0.753 36 H 0.250 0.750 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.126 0.874 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.114 0.886 46 H 0.093 0.907 47 H 0.105 0.895 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.264 -32.643 1.357 33.701 hybrid contribution 0.253 2.210 0.339 2.251 sum 8.517 -30.433 1.696 31.648 Atomic orbital electron populations 1.69973 1.06056 1.26625 1.50606 1.25032 0.94874 0.99357 0.95231 0.86515 0.80074 0.83669 0.77607 1.19730 1.20986 1.20990 1.21237 0.93093 0.90862 1.50888 0.92510 1.19040 0.93801 0.90800 0.97732 1.21931 0.99885 0.92937 1.01322 1.21859 0.91727 0.84699 1.02568 1.46076 1.12252 1.04981 1.70894 1.19974 0.88435 0.84504 0.79175 1.90766 1.15955 1.84679 1.48838 1.20397 0.88850 0.84394 0.77208 1.90765 1.16214 1.84740 1.47579 1.45785 1.11417 1.04490 1.73647 1.20971 0.93086 0.85477 0.96938 0.88803 1.22109 0.97724 1.00579 0.96939 1.23412 1.00171 0.94276 1.04695 1.86922 1.75353 1.14666 1.25509 1.23838 0.98693 0.99533 0.93365 1.22736 1.01677 0.96049 0.94076 1.22879 0.99068 0.99459 0.96214 1.23238 0.97644 1.01809 0.94074 1.21745 0.97469 0.92647 1.02791 0.92960 0.96185 0.96178 0.92422 0.92416 0.91057 0.91047 0.75306 0.74965 0.89837 0.90100 0.89374 0.87419 0.90242 0.88974 0.90608 0.89688 0.88628 0.90727 0.89536 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.11 1.90 5.67 -4.04 -0.02 1.88 16 12 N -0.69 -9.99 5.55 -60.73 -0.34 -10.33 16 13 C 0.50 7.12 7.89 -11.59 -0.09 7.03 16 14 O -0.53 -8.56 16.48 5.50 0.09 -8.47 16 15 C 0.51 6.22 7.72 -11.59 -0.09 6.13 16 16 O -0.52 -7.20 16.14 5.49 0.09 -7.11 16 17 N -0.70 -6.39 5.05 -54.64 -0.28 -6.67 16 18 C 0.14 1.07 2.16 -68.34 -0.15 0.92 16 19 H 0.09 0.84 6.38 -51.93 -0.33 0.51 16 20 C -0.13 -1.00 5.26 -26.95 -0.14 -1.15 16 21 C -0.08 -0.53 6.47 37.24 0.24 -0.29 16 22 S -0.26 -1.93 21.59 -107.50 -2.32 -4.25 16 23 C -0.04 -0.27 0.98 -90.55 -0.09 -0.35 16 24 C -0.11 -0.54 7.27 -26.14 -0.19 -0.73 16 25 C -0.14 -0.64 7.74 -25.81 -0.20 -0.84 16 26 C -0.13 -0.73 7.06 -26.17 -0.18 -0.92 16 27 C -0.11 -0.63 4.37 -27.01 -0.12 -0.75 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.41 5.42 7.94 -40.82 -0.32 5.10 16 36 H 0.41 3.37 8.06 -40.82 -0.33 3.04 16 37 H 0.08 0.74 8.01 -51.93 -0.42 0.33 16 38 H 0.08 0.58 8.06 -51.93 -0.42 0.16 16 39 H 0.09 0.62 8.12 -51.93 -0.42 0.20 16 40 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.36 8.10 -51.93 -0.42 -0.06 16 42 H 0.09 0.49 8.09 -51.92 -0.42 0.07 16 43 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 44 H 0.08 0.38 7.66 -51.93 -0.40 -0.02 16 45 H 0.10 0.56 8.09 -51.92 -0.42 0.14 16 46 H 0.07 0.47 7.15 -51.93 -0.37 0.10 16 47 H 0.09 0.49 8.09 -51.93 -0.42 0.07 16 48 H 0.09 0.47 7.38 -51.93 -0.38 0.09 16 LS Contribution 398.68 15.07 6.01 6.01 Total: -1.00 -31.45 398.68 -10.75 -42.20 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -8.00 Total: 2.39 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -1.72 Total: -4.36 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.12 Total: -42.76 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.18 Total: -15.58 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.93 SS G_CDS: -2.32 Total: -4.25 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.45 -10.75 -42.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354567844.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.482 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds