Wall clock time and date at job start Sat Apr 11 2020 06:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00102 * 2 1 4 4 H 1.48501 * 109.47231 * 240.00420 * 3 2 1 5 5 H 1.48505 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47260 * 119.99845 * 3 2 1 7 7 C 1.38795 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00171 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47178 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.47025 * 125.64375 * 0.02562 * 13 11 10 15 15 C 1.54327 * 107.27046 * 181.02591 * 14 13 11 16 16 C 1.55162 * 102.94028 * 22.19447 * 15 14 13 17 17 H 1.09004 * 111.00359 * 82.57333 * 16 15 14 18 18 C 1.52998 * 111.00416 * 206.38723 * 16 15 14 19 19 N 1.46499 * 109.46946 * 185.00330 * 18 16 15 20 20 C 1.34776 * 119.99952 * 179.97438 * 19 18 16 21 21 O 1.21284 * 119.99998 * 359.97438 * 20 19 18 22 22 C 1.50701 * 120.00251 * 179.97438 * 20 19 18 23 23 C 1.52994 * 109.47255 * 179.97438 * 22 20 19 24 24 C 1.53780 * 113.61710 * 272.49698 * 23 22 20 25 25 C 1.53784 * 87.08418 * 220.02121 * 24 23 22 26 26 C 1.53782 * 87.07896 * 25.43030 * 25 24 23 27 27 C 1.47423 * 125.65106 * 179.71993 * 13 11 10 28 28 H 0.97005 * 119.99806 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 30 30 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 31 31 H 1.08997 * 109.88721 * 300.44164 * 14 13 11 32 32 H 1.09002 * 109.88145 * 61.45818 * 14 13 11 33 33 H 1.08993 * 110.72304 * 140.55572 * 15 14 13 34 34 H 1.09003 * 110.71948 * 263.83844 * 15 14 13 35 35 H 1.09002 * 109.47319 * 304.99916 * 18 16 15 36 36 H 1.09000 * 109.47630 * 65.00147 * 18 16 15 37 37 H 0.96996 * 120.00032 * 359.97438 * 19 18 16 38 38 H 1.09002 * 109.46888 * 300.00344 * 22 20 19 39 39 H 1.09000 * 109.46693 * 59.99737 * 22 20 19 40 40 H 1.09002 * 112.85262 * 43.81079 * 23 22 20 41 41 H 1.08997 * 113.61319 * 334.56932 * 24 23 22 42 42 H 1.08999 * 113.61147 * 105.47210 * 24 23 22 43 43 H 1.09003 * 113.61193 * 270.88453 * 25 24 23 44 44 H 1.08997 * 113.61917 * 139.98205 * 25 24 23 45 45 H 1.08997 * 113.61464 * 220.01709 * 26 25 24 46 46 H 1.09007 * 113.68985 * 89.13143 * 26 25 24 47 47 H 1.09001 * 110.35984 * 274.74376 * 27 13 11 48 48 H 1.08995 * 110.36572 * 37.06219 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9874 -5.3027 -0.0030 12 8 0.7911 -5.5023 -0.0021 13 7 2.8441 -6.3431 -0.0037 14 6 4.3111 -6.2450 -0.0032 15 6 4.8665 -7.6846 -0.0308 16 6 3.6848 -8.5019 -0.6164 17 1 3.6704 -8.4430 -1.7047 18 6 3.7403 -9.9578 -0.1496 19 7 2.6834 -10.7243 -0.8141 20 6 2.5402 -12.0392 -0.5552 21 8 3.2867 -12.5880 0.2274 22 6 1.4526 -12.8276 -1.2383 23 6 1.5090 -14.2839 -0.7726 24 6 2.4615 -15.1599 -1.6034 25 6 1.4006 -16.2690 -1.5054 26 6 0.3620 -15.1503 -1.3190 27 6 2.4656 -7.7679 0.0013 28 1 -0.4850 0.8401 0.0004 29 1 3.1238 -3.7309 -0.8925 30 1 3.1252 -3.7317 0.8875 31 1 4.6466 -5.7013 -0.8863 32 1 4.6480 -5.7324 0.8978 33 1 5.7392 -7.7489 -0.6805 34 1 5.1084 -8.0240 0.9765 35 1 4.7114 -10.3836 -0.4022 36 1 3.5953 -9.9992 0.9299 37 1 2.0866 -10.2855 -1.4403 38 1 0.4816 -12.4021 -0.9849 39 1 1.5970 -12.7859 -2.3179 40 1 1.6533 -14.3789 0.3037 41 1 2.6179 -14.7939 -2.6181 42 1 3.3928 -15.4000 -1.0906 43 1 1.5164 -16.9076 -0.6296 44 1 1.2729 -16.8340 -2.4286 45 1 -0.4015 -15.3827 -0.5766 46 1 -0.0565 -14.7808 -2.2552 47 1 2.2904 -8.1102 1.0212 48 1 1.5778 -7.9266 -0.6108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354798850.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:36 Heat of formation + Delta-G solvation = -66.015548 kcal Electronic energy + Delta-G solvation = -26095.253284 eV Core-core repulsion = 22276.348153 eV Total energy + Delta-G solvation = -3818.905131 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.46023 -39.82954 -38.64453 -37.48080 -35.04755 -32.45111 -32.32168 -30.90630 -29.70634 -28.90742 -26.03322 -25.92153 -25.42110 -23.90291 -22.89360 -21.13265 -20.47315 -19.73695 -19.35244 -17.77078 -17.39340 -16.86261 -16.55834 -16.14424 -16.00360 -15.48119 -15.12638 -14.81987 -14.81741 -14.48911 -14.15511 -13.93312 -13.89053 -13.43907 -13.22855 -12.83887 -12.82393 -12.68647 -12.50715 -12.30816 -12.24904 -11.84961 -11.82645 -11.67237 -11.31466 -11.08046 -11.05875 -11.04841 -11.02330 -10.78421 -10.70587 -10.56873 -10.06005 -9.84496 -9.47569 -9.39597 -9.07642 -8.56503 -8.26436 -6.52668 -6.23221 -3.94345 2.36423 2.81273 2.87480 3.01443 3.22180 3.24333 3.27864 3.58084 4.08301 4.16788 4.19550 4.22529 4.24889 4.32341 4.42838 4.48849 4.64566 4.88077 4.91875 4.95572 5.02090 5.03658 5.11696 5.11912 5.19860 5.32205 5.33257 5.36531 5.40933 5.47900 5.51441 5.52263 5.55569 5.59004 5.67347 5.69471 5.71744 5.86471 5.89381 5.91013 6.07866 6.11113 6.15674 6.35850 7.14926 7.57225 7.61340 7.91922 8.33181 8.50597 9.21873 10.84146 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029710 B = 0.001612 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.225701 B =17360.276614 C =18112.660957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.147 4.147 11 C 0.548 3.452 12 O -0.516 6.516 13 N -0.627 5.627 14 C 0.102 3.898 15 C -0.121 4.121 16 C -0.117 4.117 17 H 0.093 0.907 18 C 0.132 3.868 19 N -0.734 5.734 20 C 0.513 3.487 21 O -0.540 6.540 22 C -0.134 4.134 23 C -0.095 4.095 24 C -0.135 4.135 25 C -0.143 4.143 26 C -0.139 4.139 27 C 0.113 3.887 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.402 0.598 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.067 0.933 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.411 -28.011 -4.262 29.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.390 6.390 13 N -0.365 5.365 14 C -0.022 4.022 15 C -0.160 4.160 16 C -0.136 4.136 17 H 0.111 0.889 18 C 0.008 3.992 19 N -0.386 5.386 20 C 0.300 3.700 21 O -0.416 6.416 22 C -0.174 4.174 23 C -0.114 4.114 24 C -0.172 4.172 25 C -0.181 4.181 26 C -0.176 4.176 27 C -0.010 4.010 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.237 0.763 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.100 0.900 47 H 0.085 0.915 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.943 -28.499 -3.683 29.563 hybrid contribution 1.770 1.658 -0.316 2.446 sum 8.714 -26.841 -3.999 28.502 Atomic orbital electron populations 1.70007 1.05959 1.27587 1.46707 1.24985 0.95025 0.99008 0.94484 0.86224 0.79245 0.81222 0.78806 1.19931 1.20783 1.19928 1.22816 0.94862 0.91609 1.59173 0.90977 1.85393 1.04939 0.96350 1.96729 1.23510 1.06479 0.94936 1.04810 1.20046 0.85667 0.85495 0.75081 1.90708 1.14939 1.85145 1.48192 1.48501 1.06560 1.05601 1.75850 1.21997 0.80481 0.97285 1.02404 1.22621 0.97373 0.93641 1.02324 1.22692 0.96156 0.93391 1.01370 0.88853 1.21280 0.91228 0.89017 0.97678 1.46093 1.35542 1.09668 1.47308 1.20746 0.85474 0.81798 0.81969 1.90701 1.45470 1.69792 1.35685 1.21729 0.98326 0.95921 1.01395 1.22345 0.96848 0.91178 1.01002 1.22946 0.97778 0.96567 0.99933 1.22797 0.96862 0.96450 1.01957 1.22990 0.96525 0.96761 1.01356 1.22249 0.97177 0.80769 1.00825 0.92108 0.89297 0.89281 0.91123 0.91060 0.89564 0.90028 0.90907 0.90974 0.76323 0.88548 0.88799 0.88216 0.90407 0.91297 0.90220 0.91531 0.91382 0.90026 0.91466 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -2.99 5.35 36.01 0.19 -2.79 16 11 C 0.55 10.43 7.87 -10.98 -0.09 10.34 16 12 O -0.52 -11.82 16.12 5.56 0.09 -11.73 16 13 N -0.63 -8.64 3.32 -170.38 -0.57 -9.21 16 14 C 0.10 1.01 6.48 -3.06 -0.02 0.99 16 15 C -0.12 -0.82 6.42 -24.89 -0.16 -0.98 16 16 C -0.12 -0.84 3.06 -88.35 -0.27 -1.11 16 17 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 18 C 0.13 0.97 5.13 -4.04 -0.02 0.95 16 19 N -0.73 -5.15 5.50 -60.29 -0.33 -5.49 16 20 C 0.51 4.49 7.83 -10.99 -0.09 4.41 16 21 O -0.54 -6.80 15.76 5.55 0.09 -6.71 16 22 C -0.13 -0.80 5.54 -27.89 -0.15 -0.96 16 23 C -0.10 -0.66 3.15 -89.81 -0.28 -0.94 16 24 C -0.13 -0.90 7.63 -25.92 -0.20 -1.10 16 25 C -0.14 -0.82 8.08 -25.92 -0.21 -1.03 16 26 C -0.14 -0.76 7.64 -25.92 -0.20 -0.96 16 27 C 0.11 1.23 6.33 -2.41 -0.02 1.21 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 30 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.51 8.04 -51.93 -0.42 0.09 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.61 7.96 -51.93 -0.41 0.20 16 37 H 0.40 2.06 8.47 -40.82 -0.35 1.71 16 38 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.41 7.84 -51.93 -0.41 0.00 16 40 H 0.10 0.86 7.67 -51.93 -0.40 0.47 16 41 H 0.08 0.46 7.89 -51.93 -0.41 0.05 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.38 8.10 -51.92 -0.42 -0.04 16 47 H 0.07 0.74 7.91 -51.93 -0.41 0.33 16 48 H 0.08 0.89 8.03 -51.93 -0.42 0.48 16 LS Contribution 406.63 15.07 6.13 6.13 Total: -1.00 -36.33 406.63 -10.66 -46.99 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -8.26 Total: -2.15 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.31 Total: -4.89 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: -0.16 Total: -40.00 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.18 Total: -18.44 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.33 -10.66 -46.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354798850.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.022 kcal (2) G-P(sol) polarization free energy of solvation -36.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds