Wall clock time and date at job start Sat Apr 11 2020 06:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00102 * 2 1 4 4 H 1.48501 * 109.47231 * 240.00420 * 3 2 1 5 5 H 1.48505 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47260 * 119.99845 * 3 2 1 7 7 C 1.38795 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00171 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47178 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.47025 * 125.64375 * 0.02562 * 13 11 10 15 15 C 1.54327 * 107.27046 * 181.02591 * 14 13 11 16 16 C 1.55162 * 102.94028 * 22.19447 * 15 14 13 17 17 H 1.09004 * 111.00359 * 82.57333 * 16 15 14 18 18 C 1.52998 * 111.00416 * 206.38723 * 16 15 14 19 19 N 1.46499 * 109.46946 * 185.00330 * 18 16 15 20 20 C 1.34776 * 119.99952 * 179.97438 * 19 18 16 21 21 O 1.21284 * 119.99998 * 359.97438 * 20 19 18 22 22 C 1.50701 * 120.00251 * 179.97438 * 20 19 18 23 23 C 1.52994 * 109.47255 * 179.97438 * 22 20 19 24 24 C 1.53780 * 113.61710 * 272.49698 * 23 22 20 25 25 C 1.53784 * 87.08418 * 220.02121 * 24 23 22 26 26 C 1.53782 * 87.07896 * 25.43030 * 25 24 23 27 27 C 1.47423 * 125.65106 * 179.71993 * 13 11 10 28 28 H 0.97005 * 119.99806 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 30 30 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 31 31 H 1.08997 * 109.88721 * 300.44164 * 14 13 11 32 32 H 1.09002 * 109.88145 * 61.45818 * 14 13 11 33 33 H 1.08993 * 110.72304 * 140.55572 * 15 14 13 34 34 H 1.09003 * 110.71948 * 263.83844 * 15 14 13 35 35 H 1.09002 * 109.47319 * 304.99916 * 18 16 15 36 36 H 1.09000 * 109.47630 * 65.00147 * 18 16 15 37 37 H 0.96996 * 120.00032 * 359.97438 * 19 18 16 38 38 H 1.09002 * 109.46888 * 300.00344 * 22 20 19 39 39 H 1.09000 * 109.46693 * 59.99737 * 22 20 19 40 40 H 1.09002 * 112.85262 * 43.81079 * 23 22 20 41 41 H 1.08997 * 113.61319 * 334.56932 * 24 23 22 42 42 H 1.08999 * 113.61147 * 105.47210 * 24 23 22 43 43 H 1.09003 * 113.61193 * 270.88453 * 25 24 23 44 44 H 1.08997 * 113.61917 * 139.98205 * 25 24 23 45 45 H 1.08997 * 113.61464 * 220.01709 * 26 25 24 46 46 H 1.09007 * 113.68985 * 89.13143 * 26 25 24 47 47 H 1.09001 * 110.35984 * 274.74376 * 27 13 11 48 48 H 1.08995 * 110.36572 * 37.06219 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9874 -5.3027 -0.0030 12 8 0.7911 -5.5023 -0.0021 13 7 2.8441 -6.3431 -0.0037 14 6 4.3111 -6.2450 -0.0032 15 6 4.8665 -7.6846 -0.0308 16 6 3.6848 -8.5019 -0.6164 17 1 3.6704 -8.4430 -1.7047 18 6 3.7403 -9.9578 -0.1496 19 7 2.6834 -10.7243 -0.8141 20 6 2.5402 -12.0392 -0.5552 21 8 3.2867 -12.5880 0.2274 22 6 1.4526 -12.8276 -1.2383 23 6 1.5090 -14.2839 -0.7726 24 6 2.4615 -15.1599 -1.6034 25 6 1.4006 -16.2690 -1.5054 26 6 0.3620 -15.1503 -1.3190 27 6 2.4656 -7.7679 0.0013 28 1 -0.4850 0.8401 0.0004 29 1 3.1238 -3.7309 -0.8925 30 1 3.1252 -3.7317 0.8875 31 1 4.6466 -5.7013 -0.8863 32 1 4.6480 -5.7324 0.8978 33 1 5.7392 -7.7489 -0.6805 34 1 5.1084 -8.0240 0.9765 35 1 4.7114 -10.3836 -0.4022 36 1 3.5953 -9.9992 0.9299 37 1 2.0866 -10.2855 -1.4403 38 1 0.4816 -12.4021 -0.9849 39 1 1.5970 -12.7859 -2.3179 40 1 1.6533 -14.3789 0.3037 41 1 2.6179 -14.7939 -2.6181 42 1 3.3928 -15.4000 -1.0906 43 1 1.5164 -16.9076 -0.6296 44 1 1.2729 -16.8340 -2.4286 45 1 -0.4015 -15.3827 -0.5766 46 1 -0.0565 -14.7808 -2.2552 47 1 2.2904 -8.1102 1.0212 48 1 1.5778 -7.9266 -0.6108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354798850.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:35 Heat of formation + Delta-G solvation = -90.084317 kcal Electronic energy + Delta-G solvation = -26096.296984 eV Core-core repulsion = 22276.348153 eV Total energy + Delta-G solvation = -3819.948831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.26637 -40.80405 -39.29209 -38.58434 -35.87006 -34.59353 -33.28787 -31.58102 -30.86632 -29.89552 -27.72286 -26.72159 -26.42679 -24.61380 -23.64839 -21.82241 -21.15018 -20.68693 -20.22990 -19.56411 -18.18771 -17.95076 -17.59589 -16.91543 -16.88516 -16.73270 -16.48166 -16.21287 -15.72120 -15.49755 -15.29997 -14.95566 -14.62577 -14.53733 -14.31792 -13.94025 -13.83034 -13.47427 -13.43552 -13.27441 -13.17063 -12.99232 -12.86833 -12.76861 -12.64012 -12.38102 -12.29106 -12.04901 -11.74404 -11.69022 -11.51129 -11.23072 -11.13333 -11.05340 -11.00153 -10.74059 -10.30055 -10.06598 -9.72146 -8.69076 -8.35050 -6.14132 1.23366 1.44015 1.44779 1.53729 1.54963 1.70125 2.07438 2.24588 2.27020 2.99117 3.21191 3.42368 3.50768 3.65596 3.75250 3.76881 3.83435 3.90015 4.01515 4.11988 4.19521 4.24281 4.31504 4.37504 4.43908 4.50399 4.57868 4.59178 4.73098 4.75336 4.77820 4.82408 4.89149 4.92894 4.95913 5.03429 5.05974 5.11237 5.18375 5.24548 5.36675 5.40678 5.41526 5.47798 5.65742 6.18812 6.35806 6.56997 7.05916 7.08746 7.29421 8.73953 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029710 B = 0.001612 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.225701 B =17360.276614 C =18112.660957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.120 4.120 11 C 0.545 3.455 12 O -0.567 6.567 13 N -0.618 5.618 14 C 0.089 3.911 15 C -0.111 4.111 16 C -0.096 4.096 17 H 0.108 0.892 18 C 0.136 3.864 19 N -0.726 5.726 20 C 0.509 3.491 21 O -0.584 6.584 22 C -0.129 4.129 23 C -0.102 4.102 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.131 4.131 27 C 0.106 3.894 28 H 0.271 0.729 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.413 0.587 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.096 0.904 47 H 0.064 0.936 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.679 -28.289 -5.464 30.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.271 4.271 11 C 0.333 3.667 12 O -0.446 6.446 13 N -0.353 5.353 14 C -0.033 4.033 15 C -0.149 4.149 16 C -0.115 4.115 17 H 0.126 0.874 18 C 0.012 3.988 19 N -0.378 5.378 20 C 0.297 3.703 21 O -0.464 6.464 22 C -0.168 4.168 23 C -0.121 4.121 24 C -0.175 4.175 25 C -0.180 4.180 26 C -0.168 4.168 27 C -0.016 4.016 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.133 0.867 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.250 0.750 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.115 0.885 47 H 0.083 0.917 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.256 -28.803 -4.901 30.648 hybrid contribution 1.131 1.612 0.084 1.971 sum 10.387 -27.191 -4.818 29.503 Atomic orbital electron populations 1.70177 1.07995 1.28709 1.47835 1.26125 0.95956 1.03297 0.93627 0.85003 0.77815 0.75637 0.79528 1.18549 1.20376 1.18688 1.23162 0.95338 0.91909 1.59164 0.89899 1.85574 1.10511 0.99261 1.97050 1.23307 1.03407 0.94049 1.06359 1.19772 0.85461 0.86031 0.75389 1.90685 1.17064 1.85779 1.51089 1.48445 1.07992 1.05649 1.73181 1.22379 0.77791 0.99872 1.03240 1.22654 0.97666 0.90969 1.03607 1.22561 0.94384 0.92719 1.01867 0.87431 1.21213 0.91584 0.88929 0.97057 1.46072 1.35456 1.09292 1.47025 1.21247 0.85461 0.82185 0.81378 1.90685 1.47274 1.70727 1.37733 1.21768 0.97913 0.94780 1.02357 1.22308 0.97856 0.92218 0.99677 1.22979 0.97116 0.97182 1.00206 1.22805 0.96499 0.96406 1.02305 1.22976 0.95978 0.95970 1.01890 1.22468 0.98786 0.79365 1.01028 0.91960 0.87433 0.87715 0.90021 0.90520 0.86728 0.89166 0.90304 0.92162 0.75025 0.87066 0.86491 0.90729 0.89277 0.93196 0.90659 0.90488 0.91335 0.88514 0.91731 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.81 13.22 21.65 0.29 -55.52 16 2 C 0.01 0.84 5.49 84.86 0.47 1.31 16 3 Si 1.00 43.19 29.55 68.60 2.03 45.21 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 7 C -0.55 -31.22 9.50 67.95 0.65 -30.58 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 10 C -0.12 -4.83 5.35 71.24 0.38 -4.45 16 11 C 0.55 20.70 7.87 87.66 0.69 21.39 16 12 O -0.57 -26.82 16.12 -3.02 -0.05 -26.87 16 13 N -0.62 -16.13 3.32 -811.34 -2.70 -18.82 16 14 C 0.09 1.50 6.48 86.73 0.56 2.06 16 15 C -0.11 -1.10 6.42 31.79 0.20 -0.89 16 16 C -0.10 -1.12 3.06 -9.32 -0.03 -1.15 16 17 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 18 C 0.14 1.72 5.13 86.38 0.44 2.16 16 19 N -0.73 -8.97 5.50 -463.06 -2.55 -11.51 16 20 C 0.51 8.44 7.83 87.66 0.69 9.13 16 21 O -0.58 -14.79 15.76 -3.04 -0.05 -14.84 16 22 C -0.13 -1.34 5.54 29.85 0.17 -1.17 16 23 C -0.10 -1.35 3.15 -10.27 -0.03 -1.39 16 24 C -0.14 -1.77 7.63 31.12 0.24 -1.53 16 25 C -0.14 -1.50 8.08 31.12 0.25 -1.25 16 26 C -0.13 -1.26 7.64 31.12 0.24 -1.02 16 27 C 0.11 2.16 6.33 86.93 0.55 2.71 16 28 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 29 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 30 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.09 0.81 8.04 -2.39 -0.02 0.79 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.06 0.94 7.96 -2.39 -0.02 0.92 16 37 H 0.41 3.34 8.47 -92.71 -0.79 2.55 16 38 H 0.11 0.84 8.14 -2.39 -0.02 0.83 16 39 H 0.12 0.70 7.84 -2.39 -0.02 0.68 16 40 H 0.07 1.37 7.67 -2.39 -0.02 1.35 16 41 H 0.09 0.92 7.89 -2.39 -0.02 0.90 16 42 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.10 0.66 8.10 -2.38 -0.02 0.64 16 47 H 0.06 1.38 7.91 -2.39 -0.02 1.36 16 48 H 0.07 1.54 8.03 -2.39 -0.02 1.52 16 Total: -1.00 -82.88 406.63 1.43 -81.45 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.16 Total: 15.16 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 5.46 Total: -4.67 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -4.96 Total: -85.86 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -0.10 Total: -41.70 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -82.88 1.43 -81.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354798850.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.632 kcal (2) G-P(sol) polarization free energy of solvation -82.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds