Wall clock time and date at job start Sat Apr 11 2020 06:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86790 * 120.00390 * 2 1 4 4 H 1.48498 * 109.47434 * 240.00070 * 3 2 1 5 5 H 1.48508 * 109.47009 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47318 * 119.99898 * 3 2 1 7 7 C 1.37881 * 119.99575 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99705 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00148 * 359.97438 * 7 2 1 10 10 O 1.42901 * 113.25460 * 312.95089 * 9 7 2 11 11 C 1.53510 * 114.16896 * 180.02562 * 9 7 2 12 12 N 1.47485 * 87.93084 * 220.13656 * 11 9 7 13 13 C 1.46899 * 110.99765 * 138.70449 * 12 11 9 14 14 C 1.53001 * 109.46973 * 170.00305 * 13 12 11 15 15 C 1.50702 * 109.47388 * 179.97438 * 14 13 12 16 16 O 1.21292 * 119.99534 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00186 * 180.02562 * 15 14 13 18 18 C 1.39612 * 120.00024 * 185.51721 * 17 15 14 19 19 C 1.37821 * 120.29922 * 24.86948 * 18 17 15 20 20 C 1.39158 * 120.75590 * 179.97438 * 19 18 17 21 21 C 1.36174 * 121.07957 * 0.06202 * 20 19 18 22 22 C 1.40513 * 119.95131 * 359.96040 * 21 20 19 23 23 C 1.40578 * 121.20571 * 180.02562 * 22 21 20 24 24 C 1.36096 * 119.66181 * 179.97438 * 23 22 21 25 25 C 1.39346 * 120.98041 * 359.97438 * 24 23 22 26 26 C 1.36152 * 120.95732 * 0.02562 * 25 24 23 27 27 C 1.40371 * 119.67452 * 359.97438 * 26 25 24 28 28 C 1.47476 * 87.83435 * 27.01149 * 12 11 9 29 29 H 0.96999 * 119.99419 * 359.97438 * 1 2 3 30 30 H 0.96698 * 114.00241 * 47.04863 * 10 9 7 31 31 H 1.09004 * 113.47897 * 105.37101 * 11 9 7 32 32 H 1.09000 * 113.53578 * 334.90928 * 11 9 7 33 33 H 1.08989 * 109.47613 * 50.00240 * 13 12 11 34 34 H 1.09000 * 109.46820 * 289.99585 * 13 12 11 35 35 H 1.09002 * 109.47601 * 59.99816 * 14 13 12 36 36 H 1.09006 * 109.47031 * 299.99673 * 14 13 12 37 37 H 0.97004 * 120.00012 * 5.51118 * 17 15 14 38 38 H 1.08000 * 119.62418 * 359.97438 * 19 18 17 39 39 H 1.08002 * 119.46237 * 180.02562 * 20 19 18 40 40 H 1.07997 * 120.02111 * 180.22795 * 21 20 19 41 41 H 1.08005 * 120.17011 * 359.95704 * 23 22 21 42 42 H 1.07996 * 119.51098 * 179.97438 * 24 23 22 43 43 H 1.07997 * 119.52307 * 179.97438 * 25 24 23 44 44 H 1.08010 * 120.16381 * 180.02562 * 26 25 24 45 45 H 1.09000 * 113.47816 * 87.75680 * 28 12 11 46 46 H 1.09003 * 113.47444 * 218.22308 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 0.1945 -2.5407 0.9608 11 6 2.1495 -3.7438 -0.0005 12 7 1.2048 -4.3602 -0.9506 13 6 1.9203 -5.0902 -2.0056 14 6 0.9230 -5.9162 -2.8205 15 6 1.6569 -6.6647 -3.9033 16 8 2.8593 -6.5484 -4.0127 17 7 0.9771 -7.4623 -4.7506 18 6 1.6674 -8.2441 -5.6788 19 6 2.9721 -8.6181 -5.4393 20 6 3.6689 -9.3977 -6.3576 21 6 3.0840 -9.8109 -7.5158 22 6 1.7555 -9.4509 -7.7983 23 6 1.1258 -9.8633 -8.9855 24 6 -0.1625 -9.4969 -9.2270 25 6 -0.8698 -8.7176 -8.3136 26 6 -0.2918 -8.3002 -7.1537 27 6 1.0355 -8.6586 -6.8703 28 6 0.8516 -2.9993 -1.3959 29 1 -0.4849 0.8401 0.0004 30 1 -0.3700 -1.7555 0.9591 31 1 2.1889 -4.2510 0.9635 32 1 3.1381 -3.5669 -0.4243 33 1 2.6571 -5.7536 -1.5529 34 1 2.4247 -4.3800 -2.6608 35 1 0.1861 -5.2529 -3.2734 36 1 0.4185 -6.6265 -2.1654 37 1 0.0082 -7.4933 -4.7156 38 1 3.4593 -8.3026 -4.5285 39 1 4.6904 -9.6791 -6.1485 40 1 3.6395 -10.4185 -8.2148 41 1 1.6616 -10.4677 -9.7025 42 1 -0.6438 -9.8147 -10.1400 43 1 -1.8910 -8.4400 -8.5293 44 1 -0.8521 -7.6969 -6.4545 45 1 1.4935 -2.6227 -2.1923 46 1 -0.2091 -2.8756 -1.6144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363776296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:42 Heat of formation + Delta-G solvation = 2.528751 kcal Electronic energy + Delta-G solvation = -28034.873141 eV Core-core repulsion = 24083.496362 eV Total energy + Delta-G solvation = -3951.376779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.19734 -39.77496 -39.02114 -36.66374 -35.27160 -34.53515 -32.34940 -32.04656 -31.45876 -30.54790 -28.93516 -27.23863 -25.06953 -24.86136 -23.72808 -23.44644 -22.43235 -21.07658 -20.29867 -18.69376 -18.27499 -18.00154 -17.28294 -16.73240 -16.34585 -15.96022 -15.81779 -15.11411 -14.95301 -14.55353 -14.27566 -14.24191 -14.13456 -13.84143 -13.72466 -13.67225 -13.24898 -12.99622 -12.77856 -12.34804 -11.95185 -11.93597 -11.74547 -11.46385 -11.43262 -11.32791 -11.26828 -11.02364 -10.87407 -10.73008 -10.59712 -10.27697 -9.95367 -9.85108 -9.53338 -9.27768 -8.86654 -8.65863 -8.22192 -7.92878 -7.73633 -6.28326 -4.37655 0.26104 0.76314 1.68307 2.45721 2.76106 2.85070 3.20961 3.26025 3.28994 3.87461 4.24269 4.35153 4.43860 4.54861 4.57484 4.72930 4.90755 4.93411 4.95184 5.03204 5.12710 5.13684 5.22442 5.36893 5.42171 5.59717 5.61355 5.72097 5.85968 5.89303 5.96543 6.00131 6.04318 6.14105 6.18705 6.20887 6.25830 6.33811 6.37895 6.42744 6.57669 6.68154 6.81228 7.01277 7.10056 7.15756 7.34516 7.75548 7.88860 7.95179 8.01380 8.64483 9.32446 9.66883 10.77782 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019959 B = 0.001960 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.570317 B =14281.497087 C =14595.017782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.066 0.934 9 C 0.247 3.753 10 O -0.570 6.570 11 C 0.006 3.994 12 N -0.475 5.475 13 C 0.033 3.967 14 C -0.127 4.127 15 C 0.515 3.485 16 O -0.513 6.513 17 N -0.671 5.671 18 C 0.162 3.838 19 C -0.139 4.139 20 C -0.087 4.087 21 C -0.135 4.135 22 C -0.033 4.033 23 C -0.107 4.107 24 C -0.115 4.115 25 C -0.119 4.119 26 C -0.105 4.105 27 C -0.070 4.070 28 C -0.023 4.023 29 H 0.272 0.728 30 H 0.390 0.610 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.411 0.589 38 H 0.148 0.852 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.060 0.940 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.814 -19.352 -16.788 25.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.572 4.572 8 H 0.084 0.916 9 C 0.206 3.794 10 O -0.383 6.383 11 C -0.123 4.123 12 N -0.197 5.197 13 C -0.097 4.097 14 C -0.168 4.168 15 C 0.304 3.696 16 O -0.388 6.388 17 N -0.315 5.315 18 C 0.066 3.934 19 C -0.160 4.160 20 C -0.106 4.106 21 C -0.154 4.154 22 C -0.034 4.034 23 C -0.125 4.125 24 C -0.134 4.134 25 C -0.137 4.137 26 C -0.124 4.124 27 C -0.071 4.071 28 C -0.153 4.153 29 H 0.082 0.918 30 H 0.246 0.754 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.248 0.752 38 H 0.166 0.834 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.078 0.922 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.392 -20.142 -16.417 25.988 hybrid contribution 0.288 1.862 -0.754 2.030 sum -0.104 -18.280 -17.171 25.080 Atomic orbital electron populations 1.69285 1.06108 1.27934 1.50660 1.25066 0.95008 0.99708 0.93377 0.86445 0.79543 0.81938 0.78888 1.20044 1.20999 1.19900 1.21553 0.93693 0.90547 1.51450 0.91577 1.19346 0.85100 0.90651 0.84341 1.86026 1.45275 1.48072 1.58895 1.24046 0.95355 0.96362 0.96518 1.68817 1.27125 1.13891 1.09881 1.22373 0.94840 0.97918 0.94528 1.21553 0.99967 0.99938 0.95306 1.21233 0.88204 0.78129 0.82011 1.90672 1.14782 1.62396 1.70938 1.43615 1.10884 1.42423 1.34610 1.17725 0.93127 0.93622 0.88922 1.21381 0.93896 0.98930 1.01773 1.20761 0.99872 0.96321 0.93598 1.20939 0.93976 1.02176 0.98341 1.17888 0.94073 0.97270 0.94125 1.21028 0.95286 1.00124 0.96078 1.20856 0.94783 0.98260 0.99451 1.20807 1.00182 0.98438 0.94311 1.20845 0.93714 0.99855 0.97940 1.17801 0.94865 1.01056 0.93420 1.24783 1.00801 0.87709 1.01974 0.91778 0.75432 0.91014 0.91670 0.91092 0.93287 0.88489 0.87766 0.75201 0.83423 0.85608 0.85622 0.85463 0.85959 0.85856 0.85977 0.92205 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.93 11.02 55.43 0.61 -23.31 16 2 C 0.07 1.84 5.39 -17.82 -0.10 1.75 16 3 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.53 -14.23 8.70 -34.44 -0.30 -14.53 16 8 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.25 6.24 1.56 -91.24 -0.14 6.10 16 10 O -0.57 -15.35 13.53 -35.23 -0.48 -15.82 16 11 C 0.01 0.13 7.09 -7.55 -0.05 0.08 16 12 N -0.47 -9.65 6.33 -244.64 -1.55 -11.20 16 13 C 0.03 0.56 4.11 -3.82 -0.02 0.55 16 14 C -0.13 -1.68 6.03 -27.88 -0.17 -1.85 16 15 C 0.52 6.87 7.63 -10.99 -0.08 6.79 16 16 O -0.51 -8.49 13.16 5.55 0.07 -8.42 16 17 N -0.67 -7.26 5.16 -9.64 -0.05 -7.31 16 18 C 0.16 1.93 6.44 -83.38 -0.54 1.40 16 19 C -0.14 -1.73 8.70 -39.39 -0.34 -2.07 16 20 C -0.09 -0.89 9.94 -39.98 -0.40 -1.29 16 21 C -0.14 -1.27 9.75 -39.47 -0.38 -1.66 16 22 C -0.03 -0.34 5.74 -106.85 -0.61 -0.95 16 23 C -0.11 -0.88 9.77 -39.47 -0.39 -1.26 16 24 C -0.12 -0.87 9.95 -39.94 -0.40 -1.27 16 25 C -0.12 -0.94 9.95 -39.92 -0.40 -1.34 16 26 C -0.11 -0.95 9.46 -39.53 -0.37 -1.33 16 27 C -0.07 -0.76 5.75 -106.70 -0.61 -1.37 16 28 C -0.02 -0.53 7.13 -7.55 -0.05 -0.58 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.39 10.64 6.33 45.56 0.29 10.93 16 31 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.07 1.37 7.87 -51.93 -0.41 0.96 16 33 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 34 H 0.05 0.90 7.26 -51.93 -0.38 0.52 16 35 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.41 3.19 7.25 -40.82 -0.30 2.89 16 38 H 0.15 2.04 5.75 -52.49 -0.30 1.74 16 39 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 42 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 43 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.12 0.87 6.70 -52.48 -0.35 0.51 16 45 H 0.06 1.35 7.38 -51.93 -0.38 0.97 16 46 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 378.71 15.07 5.71 5.71 Total: -1.00 -30.75 378.71 -11.66 -42.41 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -5.60 Total: 15.45 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -5.36 Total: -12.85 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: -0.99 Total: -41.82 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.40 Total: -24.24 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.75 -11.66 -42.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363776296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.938 kcal (2) G-P(sol) polarization free energy of solvation -30.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds