Wall clock time and date at job start Sat Apr 11 2020 06:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86790 * 120.00390 * 2 1 4 4 H 1.48498 * 109.47434 * 240.00070 * 3 2 1 5 5 H 1.48508 * 109.47009 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47318 * 119.99898 * 3 2 1 7 7 C 1.37881 * 119.99575 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99705 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00148 * 359.97438 * 7 2 1 10 10 O 1.42901 * 113.25460 * 312.95089 * 9 7 2 11 11 C 1.53510 * 114.16896 * 180.02562 * 9 7 2 12 12 N 1.47485 * 87.93084 * 220.13656 * 11 9 7 13 13 C 1.46899 * 110.99765 * 138.70449 * 12 11 9 14 14 C 1.53001 * 109.46973 * 170.00305 * 13 12 11 15 15 C 1.50702 * 109.47388 * 179.97438 * 14 13 12 16 16 O 1.21292 * 119.99534 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00186 * 180.02562 * 15 14 13 18 18 C 1.39612 * 120.00024 * 185.51721 * 17 15 14 19 19 C 1.37821 * 120.29922 * 24.86948 * 18 17 15 20 20 C 1.39158 * 120.75590 * 179.97438 * 19 18 17 21 21 C 1.36174 * 121.07957 * 0.06202 * 20 19 18 22 22 C 1.40513 * 119.95131 * 359.96040 * 21 20 19 23 23 C 1.40578 * 121.20571 * 180.02562 * 22 21 20 24 24 C 1.36096 * 119.66181 * 179.97438 * 23 22 21 25 25 C 1.39346 * 120.98041 * 359.97438 * 24 23 22 26 26 C 1.36152 * 120.95732 * 0.02562 * 25 24 23 27 27 C 1.40371 * 119.67452 * 359.97438 * 26 25 24 28 28 C 1.47476 * 87.83435 * 27.01149 * 12 11 9 29 29 H 0.96999 * 119.99419 * 359.97438 * 1 2 3 30 30 H 0.96698 * 114.00241 * 47.04863 * 10 9 7 31 31 H 1.09004 * 113.47897 * 105.37101 * 11 9 7 32 32 H 1.09000 * 113.53578 * 334.90928 * 11 9 7 33 33 H 1.08989 * 109.47613 * 50.00240 * 13 12 11 34 34 H 1.09000 * 109.46820 * 289.99585 * 13 12 11 35 35 H 1.09002 * 109.47601 * 59.99816 * 14 13 12 36 36 H 1.09006 * 109.47031 * 299.99673 * 14 13 12 37 37 H 0.97004 * 120.00012 * 5.51118 * 17 15 14 38 38 H 1.08000 * 119.62418 * 359.97438 * 19 18 17 39 39 H 1.08002 * 119.46237 * 180.02562 * 20 19 18 40 40 H 1.07997 * 120.02111 * 180.22795 * 21 20 19 41 41 H 1.08005 * 120.17011 * 359.95704 * 23 22 21 42 42 H 1.07996 * 119.51098 * 179.97438 * 24 23 22 43 43 H 1.07997 * 119.52307 * 179.97438 * 25 24 23 44 44 H 1.08010 * 120.16381 * 180.02562 * 26 25 24 45 45 H 1.09000 * 113.47816 * 87.75680 * 28 12 11 46 46 H 1.09003 * 113.47444 * 218.22308 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 0.1945 -2.5407 0.9608 11 6 2.1495 -3.7438 -0.0005 12 7 1.2048 -4.3602 -0.9506 13 6 1.9203 -5.0902 -2.0056 14 6 0.9230 -5.9162 -2.8205 15 6 1.6569 -6.6647 -3.9033 16 8 2.8593 -6.5484 -4.0127 17 7 0.9771 -7.4623 -4.7506 18 6 1.6674 -8.2441 -5.6788 19 6 2.9721 -8.6181 -5.4393 20 6 3.6689 -9.3977 -6.3576 21 6 3.0840 -9.8109 -7.5158 22 6 1.7555 -9.4509 -7.7983 23 6 1.1258 -9.8633 -8.9855 24 6 -0.1625 -9.4969 -9.2270 25 6 -0.8698 -8.7176 -8.3136 26 6 -0.2918 -8.3002 -7.1537 27 6 1.0355 -8.6586 -6.8703 28 6 0.8516 -2.9993 -1.3959 29 1 -0.4849 0.8401 0.0004 30 1 -0.3700 -1.7555 0.9591 31 1 2.1889 -4.2510 0.9635 32 1 3.1381 -3.5669 -0.4243 33 1 2.6571 -5.7536 -1.5529 34 1 2.4247 -4.3800 -2.6608 35 1 0.1861 -5.2529 -3.2734 36 1 0.4185 -6.6265 -2.1654 37 1 0.0082 -7.4933 -4.7156 38 1 3.4593 -8.3026 -4.5285 39 1 4.6904 -9.6791 -6.1485 40 1 3.6395 -10.4185 -8.2148 41 1 1.6616 -10.4677 -9.7025 42 1 -0.6438 -9.8147 -10.1400 43 1 -1.8910 -8.4400 -8.5293 44 1 -0.8521 -7.6969 -6.4545 45 1 1.4935 -2.6227 -2.1923 46 1 -0.2091 -2.8756 -1.6144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363776296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:42 Heat of formation + Delta-G solvation = -18.574783 kcal Electronic energy + Delta-G solvation = -28035.788259 eV Core-core repulsion = 24083.496362 eV Total energy + Delta-G solvation = -3952.291897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.06280 -41.03714 -40.39630 -37.43093 -36.42669 -36.12072 -34.11565 -33.50669 -32.41297 -31.24657 -29.86390 -28.85374 -26.77535 -26.56043 -24.57488 -24.16861 -23.51479 -22.26223 -21.30049 -20.54200 -19.26405 -19.08060 -18.81068 -17.72300 -17.23284 -17.07698 -16.87106 -16.72220 -16.50989 -15.89461 -15.78261 -15.27225 -15.12850 -14.89115 -14.79501 -14.68461 -14.37869 -14.26378 -13.80520 -13.60313 -13.48274 -13.31950 -13.11129 -12.97722 -12.75877 -12.55412 -12.38985 -12.29815 -12.17591 -12.08660 -11.92669 -11.70688 -11.65766 -11.16908 -10.89788 -10.64581 -10.28993 -10.10341 -9.73533 -9.59039 -8.50077 -8.26620 -6.43681 -0.45283 0.04343 0.91433 1.42689 1.43657 1.51136 1.51969 1.83549 2.12340 2.36557 2.94066 3.15100 3.17578 3.61204 3.71042 3.78513 3.85291 3.93219 3.94358 4.11868 4.22725 4.24382 4.32585 4.34880 4.37167 4.47476 4.49779 4.54128 4.58980 4.69062 4.77416 4.88508 4.90843 4.93547 4.99804 5.14065 5.17508 5.31881 5.38720 5.39080 5.42501 5.47756 5.55873 5.63972 5.74695 5.90707 5.96157 6.07975 6.24313 6.28799 6.61290 6.95633 7.29070 7.56369 8.78505 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019959 B = 0.001960 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.570317 B =14281.497087 C =14595.017782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.028 3.972 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.272 1.272 7 C -0.559 4.559 8 H 0.063 0.937 9 C 0.219 3.781 10 O -0.581 6.581 11 C 0.011 3.989 12 N -0.467 5.467 13 C 0.035 3.965 14 C -0.117 4.117 15 C 0.519 3.481 16 O -0.551 6.551 17 N -0.656 5.656 18 C 0.141 3.859 19 C -0.159 4.159 20 C -0.104 4.104 21 C -0.127 4.127 22 C -0.054 4.054 23 C -0.112 4.112 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.124 4.124 27 C -0.084 4.084 28 C -0.011 4.011 29 H 0.275 0.725 30 H 0.384 0.616 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.035 0.965 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.425 0.575 38 H 0.127 0.873 39 H 0.141 0.859 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.147 0.853 44 H 0.136 0.864 45 H 0.057 0.943 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.488 -20.337 -18.964 27.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.172 4.172 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.197 1.197 7 C -0.597 4.597 8 H 0.081 0.919 9 C 0.178 3.822 10 O -0.393 6.393 11 C -0.118 4.118 12 N -0.189 5.189 13 C -0.094 4.094 14 C -0.157 4.157 15 C 0.308 3.692 16 O -0.429 6.429 17 N -0.301 5.301 18 C 0.046 3.954 19 C -0.180 4.180 20 C -0.122 4.122 21 C -0.146 4.146 22 C -0.055 4.055 23 C -0.129 4.129 24 C -0.135 4.135 25 C -0.135 4.135 26 C -0.142 4.142 27 C -0.086 4.086 28 C -0.140 4.140 29 H 0.085 0.915 30 H 0.239 0.761 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.127 0.873 36 H 0.142 0.858 37 H 0.265 0.735 38 H 0.144 0.856 39 H 0.159 0.841 40 H 0.172 0.828 41 H 0.170 0.830 42 H 0.168 0.832 43 H 0.165 0.835 44 H 0.153 0.847 45 H 0.075 0.925 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.095 -21.161 -18.608 28.200 hybrid contribution 0.445 2.076 -0.174 2.130 sum -0.650 -19.085 -18.782 26.785 Atomic orbital electron populations 1.69353 1.07074 1.28785 1.50622 1.25800 0.95864 1.02680 0.92889 0.85472 0.78368 0.78157 0.78817 1.19694 1.20305 1.19703 1.21808 0.93801 0.91775 1.52357 0.91880 1.19697 0.85491 0.91630 0.85377 1.86007 1.45709 1.47777 1.59829 1.23972 0.95447 0.95122 0.97224 1.68757 1.27130 1.12673 1.10378 1.22342 0.95646 0.97655 0.93767 1.21426 0.99007 1.00040 0.95225 1.21149 0.87648 0.78184 0.82190 1.90669 1.16323 1.63856 1.72033 1.43380 1.11509 1.41440 1.33741 1.17876 0.93312 0.94438 0.89782 1.21386 0.94572 1.00241 1.01823 1.20949 1.00709 0.96669 0.93882 1.21285 0.93914 1.01281 0.98093 1.18257 0.94627 0.97606 0.94991 1.21353 0.95808 1.00104 0.95664 1.21263 0.94607 0.97355 1.00247 1.21195 1.01261 0.97392 0.93613 1.21079 0.93274 1.00728 0.99108 1.18014 0.95862 1.01525 0.93198 1.24526 1.00095 0.88909 1.00483 0.91475 0.76083 0.90844 0.90955 0.90896 0.94639 0.87337 0.85810 0.73519 0.85554 0.84074 0.82812 0.82989 0.83167 0.83504 0.84653 0.92516 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.07 11.02 21.45 0.24 -48.83 16 2 C 0.03 1.45 5.39 84.66 0.46 1.90 16 3 Si 0.97 41.66 29.54 68.60 2.03 43.68 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.56 -30.09 8.70 25.60 0.22 -29.87 16 8 H 0.06 3.33 7.81 -2.91 -0.02 3.31 16 9 C 0.22 11.20 1.56 -11.20 -0.02 11.18 16 10 O -0.58 -31.78 13.53 -148.98 -2.02 -33.79 16 11 C 0.01 0.50 7.09 83.57 0.59 1.09 16 12 N -0.47 -18.89 6.33 -928.28 -5.88 -24.77 16 13 C 0.04 1.19 4.11 86.30 0.35 1.55 16 14 C -0.12 -3.00 6.03 29.85 0.18 -2.82 16 15 C 0.52 13.89 7.63 87.66 0.67 14.56 16 16 O -0.55 -18.85 13.16 -3.07 -0.04 -18.89 16 17 N -0.66 -14.04 5.16 -302.81 -1.56 -15.60 16 18 C 0.14 3.41 6.44 38.51 0.25 3.66 16 19 C -0.16 -4.13 8.70 22.39 0.19 -3.93 16 20 C -0.10 -2.13 9.94 22.01 0.22 -1.92 16 21 C -0.13 -2.23 9.75 22.34 0.22 -2.01 16 22 C -0.05 -1.03 5.74 -21.30 -0.12 -1.15 16 23 C -0.11 -1.52 9.77 22.34 0.22 -1.30 16 24 C -0.12 -1.38 9.95 22.04 0.22 -1.16 16 25 C -0.12 -1.52 9.95 22.05 0.22 -1.30 16 26 C -0.12 -2.04 9.46 22.30 0.21 -1.83 16 27 C -0.08 -1.78 5.75 -21.21 -0.12 -1.90 16 28 C -0.01 -0.48 7.13 83.57 0.60 0.12 16 29 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 30 H 0.38 21.44 6.33 -74.06 -0.47 20.97 16 31 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 32 H 0.07 3.05 7.87 -2.39 -0.02 3.03 16 33 H 0.07 2.46 8.04 -2.39 -0.02 2.44 16 34 H 0.04 1.31 7.26 -2.39 -0.02 1.29 16 35 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.12 2.71 8.14 -2.38 -0.02 2.69 16 37 H 0.43 6.20 7.25 -92.71 -0.67 5.53 16 38 H 0.13 3.76 5.75 -2.91 -0.02 3.75 16 39 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 42 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 43 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 44 H 0.14 1.70 6.70 -2.91 -0.02 1.68 16 45 H 0.06 2.60 7.38 -2.39 -0.02 2.58 16 46 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -67.04 378.71 -2.80 -69.84 By element: Atomic # 1 Polarization: 43.62 SS G_CDS: -0.12 Total: 43.50 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 4.56 Total: -15.14 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -7.21 Total: -89.20 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: -2.06 Total: -52.69 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -67.04 -2.80 -69.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363776296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.261 kcal (2) G-P(sol) polarization free energy of solvation -67.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds