Wall clock time and date at job start Sat Apr 11 2020 06:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31156 * 1 3 3 Cl 1.73606 * 120.00114 * 2 1 4 4 C 1.50703 * 120.00175 * 179.97438 * 2 1 3 5 5 N 1.46496 * 109.46940 * 90.91524 * 4 2 1 6 6 C 1.36738 * 127.13756 * 272.61501 * 5 4 2 7 7 C 1.50704 * 126.34746 * 0.02562 * 6 5 4 8 8 C 1.53004 * 117.49638 * 188.62029 * 7 6 5 9 9 C 1.53004 * 60.00090 * 252.51176 * 8 7 6 10 10 N 1.30300 * 107.30990 * 179.97438 * 6 5 4 11 11 N 1.28536 * 110.04799 * 359.72791 * 10 6 5 12 12 C 1.31217 * 109.85839 * 0.45119 * 11 10 6 13 13 N 1.38583 * 126.47083 * 179.82142 * 12 11 10 14 14 C 1.46896 * 110.99888 * 20.81501 * 13 12 11 15 15 C 1.50703 * 109.46897 * 72.30550 * 14 13 12 16 16 H 1.07995 * 120.00276 * 5.31683 * 15 14 13 17 17 C 1.37883 * 119.99873 * 185.31977 * 15 14 13 18 18 N 1.31513 * 119.99699 * 173.96563 * 17 15 14 19 19 Si 1.86798 * 120.00072 * 353.96584 * 17 15 14 20 20 H 1.48501 * 109.46962 * 90.00248 * 19 17 15 21 21 H 1.48498 * 109.46983 * 209.99964 * 19 17 15 22 22 H 1.48496 * 109.47217 * 330.00451 * 19 17 15 23 23 C 1.46897 * 110.99996 * 256.86526 * 13 12 11 24 24 C 1.52998 * 109.47183 * 189.99963 * 23 13 12 25 25 O 1.42900 * 109.47076 * 65.00083 * 24 23 13 26 26 C 1.42899 * 114.00163 * 180.02562 * 25 24 23 27 27 H 1.07996 * 120.00223 * 180.02562 * 1 2 3 28 28 H 1.08004 * 119.99718 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46917 * 330.92053 * 4 2 1 30 30 H 1.08997 * 109.47287 * 210.91419 * 4 2 1 31 31 H 1.08996 * 115.55154 * 334.33017 * 7 6 5 32 32 H 1.08998 * 117.50075 * 0.02562 * 8 7 6 33 33 H 1.09003 * 117.49219 * 145.02553 * 8 7 6 34 34 H 1.09002 * 117.49889 * 252.51818 * 9 8 7 35 35 H 1.08997 * 117.51900 * 107.48419 * 9 8 7 36 36 H 1.08995 * 109.47378 * 192.29939 * 14 13 12 37 37 H 1.08995 * 109.47420 * 312.30786 * 14 13 12 38 38 H 0.97003 * 120.00018 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.47228 * 69.99593 * 23 13 12 40 40 H 1.09001 * 109.47206 * 309.99937 * 23 13 12 41 41 H 1.09005 * 109.47374 * 184.99804 * 24 23 13 42 42 H 1.09000 * 109.47346 * 305.00043 * 24 23 13 43 43 H 1.09002 * 109.47100 * 300.00264 * 26 25 24 44 44 H 1.09009 * 109.47079 * 59.99656 * 26 25 24 45 45 H 1.08999 * 109.47652 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1796 1.5035 0.0000 4 6 2.0651 -1.3051 0.0006 5 7 2.3284 -1.7175 -1.3803 6 6 1.5106 -2.4537 -2.1921 7 6 0.1528 -3.0002 -1.8332 8 6 -0.5036 -3.9663 -2.8216 9 6 -1.0390 -2.5404 -2.6754 10 7 2.1223 -2.5941 -3.3340 11 7 3.2598 -1.9964 -3.3009 12 6 3.4402 -1.4463 -2.1233 13 7 4.5482 -0.7217 -1.7136 14 6 5.2982 -0.2091 -2.8680 15 6 4.5241 0.9120 -3.5122 16 1 3.6134 1.2711 -3.0563 17 6 4.9786 1.4792 -4.6839 18 7 4.2450 2.3738 -5.3092 19 14 6.6365 0.9770 -5.3831 20 1 6.4575 -0.1758 -6.3019 21 1 7.2251 2.1180 -6.1293 22 1 7.5446 0.5895 -4.2739 23 6 5.4117 -1.5286 -0.8411 24 6 6.4806 -0.6328 -0.2119 25 8 5.8561 0.3201 0.6507 26 6 6.7711 1.2109 1.2919 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9354 0.0004 29 1 1.4690 -2.0686 0.5004 30 1 3.0103 -1.1787 0.5285 31 1 -0.0186 -3.1731 -0.7708 32 1 0.0467 -4.2068 -3.7312 33 1 -1.1070 -4.7751 -2.4093 34 1 -1.9945 -2.4112 -2.1670 35 1 -0.8411 -1.8423 -3.4888 36 1 6.2673 0.1628 -2.5356 37 1 5.4454 -1.0113 -3.5910 38 1 4.5648 2.7731 -6.1333 39 1 5.8927 -2.3106 -1.4286 40 1 4.8098 -1.9835 -0.0544 41 1 7.1743 -1.2448 0.3645 42 1 7.0247 -0.1093 -0.9981 43 1 7.4712 0.6374 1.8994 44 1 7.3210 1.7726 0.5366 45 1 6.2192 1.9026 1.9284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001390883170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:47 Heat of formation + Delta-G solvation = 102.713068 kcal Electronic energy + Delta-G solvation = -28984.082488 eV Core-core repulsion = 25066.909929 eV Total energy + Delta-G solvation = -3917.172559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.41028 -38.16531 -37.15402 -36.82123 -36.21003 -35.11479 -32.46680 -32.08231 -30.27731 -28.80784 -27.29712 -26.75385 -25.75923 -23.75702 -22.58078 -22.38966 -21.95899 -20.69822 -19.51878 -19.37174 -17.25450 -16.88012 -16.38573 -16.18422 -15.98143 -15.35930 -15.34745 -14.92665 -14.67149 -14.48390 -14.11001 -13.96107 -13.52608 -13.12742 -12.57113 -12.31820 -12.18808 -12.11963 -11.94966 -11.86501 -11.75336 -11.49643 -11.45024 -10.94068 -10.87958 -10.79419 -10.60789 -10.55713 -10.53442 -10.40565 -9.96206 -9.77027 -9.60750 -9.38657 -9.28139 -9.06679 -8.74756 -8.40258 -7.44697 -5.92900 -3.87541 1.67462 2.25097 2.53934 2.84478 3.36789 3.41210 3.42281 3.44530 3.98653 4.01241 4.29765 4.48210 4.52252 4.54053 4.67465 4.84695 4.89448 5.01624 5.15632 5.22048 5.32724 5.38923 5.47284 5.49962 5.54390 5.57761 5.64596 5.67979 5.73181 5.86597 5.88264 5.95144 6.00757 6.07378 6.17730 6.22776 6.31437 6.45237 6.67688 6.99114 7.14978 7.36722 7.49688 7.77091 8.02221 8.68276 9.17300 9.45634 9.68051 11.20920 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008864 B = 0.005622 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3158.250171 B = 4979.269420 C = 6249.525115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.087 4.087 3 Cl -0.045 7.045 4 C 0.155 3.845 5 N -0.477 5.477 6 C 0.183 3.817 7 C -0.077 4.077 8 C -0.151 4.151 9 C -0.160 4.160 10 N -0.281 5.281 11 N -0.302 5.302 12 C 0.400 3.600 13 N -0.435 5.435 14 C 0.171 3.829 15 C -0.493 4.493 16 H 0.079 0.921 17 C 0.074 3.926 18 N -0.898 5.898 19 Si 0.870 3.130 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.270 1.270 23 C 0.060 3.940 24 C 0.066 3.934 25 O -0.368 6.368 26 C 0.034 3.966 27 H 0.118 0.882 28 H 0.115 0.885 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.037 0.963 37 H 0.015 0.985 38 H 0.261 0.739 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.062 0.938 43 H 0.032 0.968 44 H 0.041 0.959 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.132 -9.575 16.452 19.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 Cl -0.017 7.017 4 C 0.031 3.969 5 N -0.172 5.172 6 C -0.083 4.083 7 C -0.098 4.098 8 C -0.189 4.189 9 C -0.198 4.198 10 N -0.120 5.120 11 N -0.144 5.144 12 C 0.045 3.955 13 N -0.159 5.159 14 C 0.046 3.954 15 C -0.531 4.531 16 H 0.097 0.903 17 C -0.128 4.128 18 N -0.537 5.537 19 Si 0.697 3.303 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.195 1.195 23 C -0.068 4.068 24 C -0.011 4.011 25 O -0.286 6.286 26 C -0.063 4.063 27 H 0.136 0.864 28 H 0.133 0.867 29 H 0.120 0.880 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.055 0.945 37 H 0.033 0.967 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.050 0.950 44 H 0.059 0.941 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.055 -9.328 15.151 18.497 hybrid contribution 1.270 0.080 0.462 1.354 sum -3.785 -9.249 15.613 18.538 Atomic orbital electron populations 1.24041 0.93858 1.03625 0.98574 1.23393 0.94098 0.89463 1.04511 1.98456 1.77064 1.29782 1.96374 1.20787 1.02564 0.92577 0.80962 1.46070 1.15110 1.42984 1.13077 1.23401 0.95531 1.00412 0.88953 1.19909 0.86501 1.05938 0.97408 1.22986 1.02102 0.92778 1.01066 1.23069 0.95878 0.98481 1.02383 1.73918 1.02464 1.18451 1.17212 1.74739 1.11046 1.12536 1.16112 1.22458 0.89533 0.95793 0.87727 1.58732 1.05273 1.30039 1.21885 1.20335 0.93526 0.96005 0.85519 1.20774 1.10209 1.15259 1.06874 0.90299 1.24767 0.96814 0.95156 0.96035 1.69901 1.36989 1.29297 1.17548 0.86940 0.85235 0.78406 0.79707 1.20020 1.21323 1.19524 1.22182 0.94748 0.94084 0.95763 1.22601 0.94355 0.91028 0.93161 1.87992 1.32787 1.46607 1.61262 1.22667 0.93844 0.93246 0.96568 0.86381 0.86676 0.88010 0.86936 0.86743 0.87230 0.88304 0.88219 0.87994 0.94525 0.96716 0.92861 0.92602 0.91009 0.93279 0.91975 0.94980 0.94080 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 14.03 28.97 0.41 -1.44 16 2 C -0.09 -1.22 6.08 -36.07 -0.22 -1.44 16 3 Cl -0.05 -0.79 28.99 -51.86 -1.50 -2.29 16 4 C 0.15 2.06 6.19 -5.19 -0.03 2.03 16 5 N -0.48 -8.29 2.79 -115.36 -0.32 -8.61 16 6 C 0.18 3.19 7.59 -154.01 -1.17 2.02 16 7 C -0.08 -0.93 5.77 -91.76 -0.53 -1.46 16 8 C -0.15 -1.65 10.15 -26.73 -0.27 -1.92 16 9 C -0.16 -1.79 10.23 -26.73 -0.27 -2.06 16 10 N -0.28 -6.09 11.79 32.99 0.39 -5.70 16 11 N -0.30 -7.30 11.05 30.31 0.33 -6.96 16 12 C 0.40 8.54 6.37 -318.87 -2.03 6.51 16 13 N -0.43 -9.06 4.43 -175.89 -0.78 -9.84 16 14 C 0.17 4.18 3.45 -4.98 -0.02 4.17 16 15 C -0.49 -14.43 9.35 -34.44 -0.32 -14.75 16 16 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 17 C 0.07 2.21 5.47 -17.82 -0.10 2.11 16 18 N -0.90 -28.60 13.96 55.43 0.77 -27.83 16 19 Si 0.87 22.24 27.43 -169.99 -4.66 17.58 16 20 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.27 -6.44 6.65 56.52 0.38 -6.06 16 23 C 0.06 0.98 5.15 -3.83 -0.02 0.96 16 24 C 0.07 0.97 6.02 37.16 0.22 1.20 16 25 O -0.37 -5.79 10.65 -35.23 -0.38 -6.16 16 26 C 0.03 0.42 11.01 101.05 1.11 1.53 16 27 H 0.12 1.03 7.80 -52.49 -0.41 0.63 16 28 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 29 H 0.10 0.95 7.44 -51.93 -0.39 0.57 16 30 H 0.11 1.52 6.76 -51.93 -0.35 1.17 16 31 H 0.11 1.03 7.60 -51.93 -0.39 0.63 16 32 H 0.11 1.43 7.92 -51.93 -0.41 1.01 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.04 0.87 5.08 -51.93 -0.26 0.61 16 37 H 0.01 0.39 6.77 -51.93 -0.35 0.04 16 38 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 39 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 40 H 0.07 1.03 6.80 -51.93 -0.35 0.68 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 1.02 6.10 -51.93 -0.32 0.70 16 43 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.04 0.52 8.14 -51.92 -0.42 0.10 16 45 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 390.61 15.07 5.89 5.89 Total: -1.00 -36.56 390.61 -10.12 -46.69 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.62 Total: -0.21 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -3.24 Total: -2.55 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 0.40 Total: -58.94 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.38 Total: -6.16 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.66 Total: 17.58 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.56 -10.12 -46.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001390883170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.400 kcal (2) G-P(sol) polarization free energy of solvation -36.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds