Wall clock time and date at job start Sat Apr 11 2020 06:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31156 * 1 3 3 Cl 1.73606 * 120.00114 * 2 1 4 4 C 1.50703 * 120.00175 * 179.97438 * 2 1 3 5 5 N 1.46496 * 109.46940 * 90.91524 * 4 2 1 6 6 C 1.36738 * 127.13756 * 272.61501 * 5 4 2 7 7 C 1.50704 * 126.34746 * 0.02562 * 6 5 4 8 8 C 1.53004 * 117.49638 * 188.62029 * 7 6 5 9 9 C 1.53004 * 60.00090 * 252.51176 * 8 7 6 10 10 N 1.30300 * 107.30990 * 179.97438 * 6 5 4 11 11 N 1.28536 * 110.04799 * 359.72791 * 10 6 5 12 12 C 1.31217 * 109.85839 * 0.45119 * 11 10 6 13 13 N 1.38583 * 126.47083 * 179.82142 * 12 11 10 14 14 C 1.46896 * 110.99888 * 20.81501 * 13 12 11 15 15 C 1.50703 * 109.46897 * 72.30550 * 14 13 12 16 16 H 1.07995 * 120.00276 * 5.31683 * 15 14 13 17 17 C 1.37883 * 119.99873 * 185.31977 * 15 14 13 18 18 N 1.31513 * 119.99699 * 173.96563 * 17 15 14 19 19 Si 1.86798 * 120.00072 * 353.96584 * 17 15 14 20 20 H 1.48501 * 109.46962 * 90.00248 * 19 17 15 21 21 H 1.48498 * 109.46983 * 209.99964 * 19 17 15 22 22 H 1.48496 * 109.47217 * 330.00451 * 19 17 15 23 23 C 1.46897 * 110.99996 * 256.86526 * 13 12 11 24 24 C 1.52998 * 109.47183 * 189.99963 * 23 13 12 25 25 O 1.42900 * 109.47076 * 65.00083 * 24 23 13 26 26 C 1.42899 * 114.00163 * 180.02562 * 25 24 23 27 27 H 1.07996 * 120.00223 * 180.02562 * 1 2 3 28 28 H 1.08004 * 119.99718 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46917 * 330.92053 * 4 2 1 30 30 H 1.08997 * 109.47287 * 210.91419 * 4 2 1 31 31 H 1.08996 * 115.55154 * 334.33017 * 7 6 5 32 32 H 1.08998 * 117.50075 * 0.02562 * 8 7 6 33 33 H 1.09003 * 117.49219 * 145.02553 * 8 7 6 34 34 H 1.09002 * 117.49889 * 252.51818 * 9 8 7 35 35 H 1.08997 * 117.51900 * 107.48419 * 9 8 7 36 36 H 1.08995 * 109.47378 * 192.29939 * 14 13 12 37 37 H 1.08995 * 109.47420 * 312.30786 * 14 13 12 38 38 H 0.97003 * 120.00018 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.47228 * 69.99593 * 23 13 12 40 40 H 1.09001 * 109.47206 * 309.99937 * 23 13 12 41 41 H 1.09005 * 109.47374 * 184.99804 * 24 23 13 42 42 H 1.09000 * 109.47346 * 305.00043 * 24 23 13 43 43 H 1.09002 * 109.47100 * 300.00264 * 26 25 24 44 44 H 1.09009 * 109.47079 * 59.99656 * 26 25 24 45 45 H 1.08999 * 109.47652 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1796 1.5035 0.0000 4 6 2.0651 -1.3051 0.0006 5 7 2.3284 -1.7175 -1.3803 6 6 1.5106 -2.4537 -2.1921 7 6 0.1528 -3.0002 -1.8332 8 6 -0.5036 -3.9663 -2.8216 9 6 -1.0390 -2.5404 -2.6754 10 7 2.1223 -2.5941 -3.3340 11 7 3.2598 -1.9964 -3.3009 12 6 3.4402 -1.4463 -2.1233 13 7 4.5482 -0.7217 -1.7136 14 6 5.2982 -0.2091 -2.8680 15 6 4.5241 0.9120 -3.5122 16 1 3.6134 1.2711 -3.0563 17 6 4.9786 1.4792 -4.6839 18 7 4.2450 2.3738 -5.3092 19 14 6.6365 0.9770 -5.3831 20 1 6.4575 -0.1758 -6.3019 21 1 7.2251 2.1180 -6.1293 22 1 7.5446 0.5895 -4.2739 23 6 5.4117 -1.5286 -0.8411 24 6 6.4806 -0.6328 -0.2119 25 8 5.8561 0.3201 0.6507 26 6 6.7711 1.2109 1.2919 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9354 0.0004 29 1 1.4690 -2.0686 0.5004 30 1 3.0103 -1.1787 0.5285 31 1 -0.0186 -3.1731 -0.7708 32 1 0.0467 -4.2068 -3.7312 33 1 -1.1070 -4.7751 -2.4093 34 1 -1.9945 -2.4112 -2.1670 35 1 -0.8411 -1.8423 -3.4888 36 1 6.2673 0.1628 -2.5356 37 1 5.4454 -1.0113 -3.5910 38 1 4.5648 2.7731 -6.1333 39 1 5.8927 -2.3106 -1.4286 40 1 4.8098 -1.9835 -0.0544 41 1 7.1743 -1.2448 0.3645 42 1 7.0247 -0.1093 -0.9981 43 1 7.4712 0.6374 1.8994 44 1 7.3210 1.7726 0.5366 45 1 6.2192 1.9026 1.9284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001390883170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:46 Heat of formation + Delta-G solvation = 78.918403 kcal Electronic energy + Delta-G solvation = -28985.114302 eV Core-core repulsion = 25066.909929 eV Total energy + Delta-G solvation = -3918.204373 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.85750 -39.49103 -38.19065 -37.96484 -37.50990 -36.35023 -34.65287 -33.31388 -31.62045 -30.59969 -28.81066 -27.92158 -26.88109 -25.06029 -24.39795 -23.41889 -23.12067 -21.93992 -20.84233 -20.64750 -19.08861 -18.40594 -17.56992 -17.46702 -17.31246 -16.72564 -16.55302 -16.25609 -15.95176 -15.77374 -15.47278 -15.13944 -15.07191 -14.48667 -14.42133 -13.81102 -13.58700 -13.26296 -13.12784 -13.01776 -12.90406 -12.82126 -12.66354 -12.41064 -12.32016 -12.25090 -11.99095 -11.87580 -11.81023 -11.79389 -11.58780 -11.44607 -11.22727 -10.94802 -10.75350 -10.43595 -10.25224 -10.16053 -9.01904 -8.24959 -6.24008 0.57747 0.95720 1.29370 1.35098 1.41191 1.47185 1.57451 1.95846 2.35045 2.82256 2.96876 3.01658 3.09586 3.39598 3.52645 3.66292 3.91524 3.92868 4.00416 4.08919 4.13016 4.28348 4.32605 4.42916 4.47082 4.58003 4.61702 4.64856 4.68714 4.77966 4.85491 4.87070 4.92498 4.98839 5.00500 5.06679 5.12236 5.22999 5.29888 5.36484 5.50634 5.75026 5.82659 6.35708 6.44471 6.47889 6.77815 7.34972 7.95326 8.92854 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008864 B = 0.005622 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3158.250171 B = 4979.269420 C = 6249.525115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.121 4.121 3 Cl -0.092 7.092 4 C 0.152 3.848 5 N -0.471 5.471 6 C 0.203 3.797 7 C -0.087 4.087 8 C -0.143 4.143 9 C -0.154 4.154 10 N -0.333 5.333 11 N -0.362 5.362 12 C 0.385 3.615 13 N -0.438 5.438 14 C 0.186 3.814 15 C -0.487 4.487 16 H 0.028 0.972 17 C 0.009 3.991 18 N -0.950 5.950 19 Si 0.938 3.062 20 H -0.279 1.279 21 H -0.280 1.280 22 H -0.239 1.239 23 C 0.056 3.944 24 C 0.069 3.931 25 O -0.393 6.393 26 C 0.030 3.970 27 H 0.159 0.841 28 H 0.117 0.883 29 H 0.154 0.846 30 H 0.108 0.892 31 H 0.163 0.837 32 H 0.078 0.922 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.000 1.000 38 H 0.263 0.737 39 H 0.061 0.939 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.042 0.958 43 H 0.060 0.940 44 H 0.031 0.969 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.795 -12.003 19.430 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.148 4.148 3 Cl -0.063 7.063 4 C 0.030 3.970 5 N -0.166 5.166 6 C -0.065 4.065 7 C -0.107 4.107 8 C -0.181 4.181 9 C -0.192 4.192 10 N -0.171 5.171 11 N -0.205 5.205 12 C 0.028 3.972 13 N -0.162 5.162 14 C 0.060 3.940 15 C -0.526 4.526 16 H 0.046 0.954 17 C -0.188 4.188 18 N -0.592 5.592 19 Si 0.762 3.238 20 H -0.205 1.205 21 H -0.205 1.205 22 H -0.162 1.162 23 C -0.070 4.070 24 C -0.008 4.008 25 O -0.312 6.312 26 C -0.066 4.066 27 H 0.176 0.824 28 H 0.135 0.865 29 H 0.172 0.828 30 H 0.126 0.874 31 H 0.181 0.819 32 H 0.096 0.904 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.018 0.982 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.049 0.951 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.713 -11.769 18.177 22.395 hybrid contribution 1.231 0.804 -0.377 1.518 sum -4.482 -10.964 17.800 21.381 Atomic orbital electron populations 1.24471 0.92866 1.05629 0.93911 1.23574 0.94835 0.88077 1.08362 1.98443 1.78269 1.32792 1.96843 1.21173 1.03453 0.93574 0.78771 1.46262 1.13688 1.42297 1.14364 1.24436 0.96517 0.97971 0.87540 1.20397 0.83560 1.06597 1.00152 1.23055 1.01610 0.93762 0.99671 1.23107 0.97023 0.97842 1.01274 1.73784 1.02760 1.20562 1.19976 1.74564 1.12941 1.14616 1.18340 1.22511 0.90671 0.96018 0.88019 1.58644 1.05657 1.31521 1.20395 1.19958 0.93692 0.93851 0.86545 1.20910 1.08677 1.16149 1.06815 0.95372 1.25718 1.01207 0.95235 0.96604 1.70073 1.39422 1.31296 1.18395 0.85840 0.80506 0.77861 0.79577 1.20479 1.20500 1.16202 1.22393 0.94961 0.94189 0.95488 1.22608 0.93997 0.91076 0.93138 1.87957 1.34365 1.47312 1.61530 1.22813 0.94000 0.93303 0.96521 0.82382 0.86461 0.82824 0.87367 0.81935 0.90368 0.84228 0.84022 0.91906 0.93130 0.98229 0.92847 0.92097 0.88837 0.89217 0.93938 0.92102 0.95050 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 14.03 67.63 0.95 -1.57 16 2 C -0.12 -3.20 6.08 25.49 0.16 -3.05 16 3 Cl -0.09 -3.25 28.99 -2.72 -0.08 -3.33 16 4 C 0.15 3.63 6.19 85.63 0.53 4.16 16 5 N -0.47 -15.92 2.79 -518.90 -1.45 -17.37 16 6 C 0.20 6.87 7.59 137.64 1.04 7.92 16 7 C -0.09 -1.77 5.77 -11.54 -0.07 -1.84 16 8 C -0.14 -2.69 10.15 30.60 0.31 -2.38 16 9 C -0.15 -2.97 10.23 30.60 0.31 -2.66 16 10 N -0.33 -14.88 11.79 -49.53 -0.58 -15.46 16 11 N -0.36 -18.28 11.05 -58.00 -0.64 -18.93 16 12 C 0.39 16.77 6.37 260.11 1.66 18.43 16 13 N -0.44 -18.54 4.43 -710.38 -3.15 -21.69 16 14 C 0.19 9.33 3.45 85.56 0.30 9.63 16 15 C -0.49 -29.93 9.35 25.60 0.24 -29.70 16 16 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 17 C 0.01 0.55 5.47 84.66 0.46 1.01 16 18 N -0.95 -63.56 13.96 21.45 0.30 -63.26 16 19 Si 0.94 47.10 27.43 68.60 1.88 48.98 16 20 H -0.28 -14.13 7.11 99.48 0.71 -13.42 16 21 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 22 H -0.24 -10.66 6.65 99.48 0.66 -10.00 16 23 C 0.06 1.78 5.15 86.30 0.44 2.22 16 24 C 0.07 1.92 6.02 71.98 0.43 2.35 16 25 O -0.39 -11.91 10.65 -148.98 -1.59 -13.49 16 26 C 0.03 0.70 11.01 113.37 1.25 1.95 16 27 H 0.16 1.77 7.80 -2.91 -0.02 1.75 16 28 H 0.12 2.25 8.06 -2.91 -0.02 2.23 16 29 H 0.15 2.02 7.44 -2.39 -0.02 2.01 16 30 H 0.11 2.71 6.76 -2.39 -0.02 2.69 16 31 H 0.16 1.77 7.60 -2.39 -0.02 1.75 16 32 H 0.08 2.00 7.92 -2.39 -0.02 1.99 16 33 H 0.14 1.51 8.14 -2.39 -0.02 1.50 16 34 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.05 2.40 5.08 -2.39 -0.01 2.39 16 37 H 0.00 -0.01 6.77 -2.39 -0.02 -0.02 16 38 H 0.26 16.45 8.31 -92.71 -0.77 15.68 16 39 H 0.06 1.86 8.12 -2.39 -0.02 1.84 16 40 H 0.09 2.51 6.80 -2.39 -0.02 2.50 16 41 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.04 1.34 6.10 -2.39 -0.01 1.33 16 43 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -89.72 390.61 3.66 -86.06 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.95 Total: 11.98 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 8.02 Total: 6.49 kcal Atomic # 7 Polarization: -131.17 SS G_CDS: -5.52 Total: -136.70 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -1.59 Total: -13.49 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.88 Total: 48.98 kcal Atomic # 17 Polarization: -3.25 SS G_CDS: -0.08 Total: -3.33 kcal Total: -89.72 3.66 -86.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001390883170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.981 kcal (2) G-P(sol) polarization free energy of solvation -89.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds