Wall clock time and date at job start Sat Apr 11 2020 06:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00500 * 2 1 4 4 C 1.52997 * 109.47499 * 270.00352 * 3 2 1 5 5 N 1.46901 * 109.46928 * 179.97438 * 4 3 2 6 6 C 1.46904 * 110.99496 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.46761 * 179.97438 * 6 5 4 8 8 O 1.21286 * 120.00064 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99582 * 179.97438 * 7 6 5 10 10 C 1.37094 * 119.99414 * 180.02562 * 9 7 6 11 11 H 1.08000 * 120.00802 * 0.02562 * 10 9 7 12 12 C 1.38955 * 119.99819 * 179.97438 * 10 9 7 13 13 N 1.31407 * 119.99852 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99985 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.46770 * 60.00420 * 14 12 10 16 16 H 1.48500 * 109.46813 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47224 * 300.00472 * 14 12 10 18 18 C 1.34782 * 119.99639 * 180.02562 * 2 1 3 19 19 O 1.21281 * 119.99870 * 180.02562 * 18 2 1 20 20 C 1.50695 * 119.99779 * 359.97438 * 18 2 1 21 21 C 1.53001 * 109.46788 * 180.02562 * 20 18 2 22 22 H 1.08996 * 110.66703 * 56.48124 * 21 20 18 23 23 C 1.54236 * 110.60660 * 179.40768 * 21 20 18 24 24 C 1.51315 * 103.55147 * 118.51776 * 23 21 20 25 25 O 1.21235 * 125.39508 * 180.02562 * 24 23 21 26 26 N 1.33875 * 109.21241 * 0.02562 * 24 23 21 27 27 C 1.33884 * 114.46988 * 359.97438 * 26 24 23 28 28 O 1.21228 * 125.39038 * 179.97438 * 27 26 24 29 29 H 1.09004 * 109.47272 * 269.99885 * 1 2 3 30 30 H 1.09011 * 109.46832 * 29.99366 * 1 2 3 31 31 H 1.09000 * 109.47520 * 149.99359 * 1 2 3 32 32 H 1.09000 * 109.46780 * 30.00290 * 3 2 1 33 33 H 1.09007 * 109.47276 * 149.99978 * 3 2 1 34 34 H 1.09000 * 109.47053 * 299.99770 * 4 3 2 35 35 H 1.09004 * 109.47130 * 60.00089 * 4 3 2 36 36 H 1.00894 * 111.00250 * 56.05069 * 5 4 3 37 37 H 1.09000 * 109.47366 * 299.99480 * 6 5 4 38 38 H 1.08995 * 109.47229 * 59.99940 * 6 5 4 39 39 H 0.96993 * 120.00215 * 0.02562 * 9 7 6 40 40 H 0.96996 * 120.00239 * 180.02562 * 13 12 10 41 41 H 1.09003 * 109.47331 * 60.00636 * 20 18 2 42 42 H 1.09000 * 109.47303 * 300.00201 * 20 18 2 43 43 H 1.08995 * 110.60911 * 237.03231 * 23 21 20 44 44 H 1.09001 * 110.60231 * 0.02562 * 23 21 20 45 45 H 0.96993 * 122.76850 * 180.26726 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7104 -1.4424 5 7 3.1866 2.9829 -1.4423 6 6 3.4493 3.4391 -2.8138 7 6 4.2016 4.7444 -2.7734 8 8 4.4909 5.2449 -1.7072 9 7 4.5538 5.3549 -3.9223 10 6 5.2386 6.5420 -3.8855 11 1 5.4962 6.9878 -2.9362 12 6 5.6022 7.1712 -5.0699 13 7 5.2892 6.6286 -6.2251 14 14 6.5347 8.7891 -5.0199 15 1 7.8225 8.5962 -4.3062 16 1 6.8007 9.2500 -6.4063 17 1 5.7216 9.8073 -4.3077 18 6 2.1388 -1.1673 -0.0005 19 8 3.3516 -1.1673 -0.0001 20 6 1.3852 -2.4723 -0.0005 21 6 2.3794 -3.6352 -0.0005 22 1 3.0574 -3.5617 0.8497 23 6 1.6348 -4.9859 0.0144 24 6 2.0685 -5.6441 -1.2772 25 8 1.7104 -6.7360 -1.6636 26 7 2.9103 -4.8298 -1.9256 27 6 3.1558 -3.6726 -1.2987 28 8 3.8851 -2.7942 -1.7063 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3634 -0.8899 -0.5139 32 1 1.6085 2.0283 0.5139 33 1 3.1500 1.1383 0.5139 34 1 3.0416 0.9508 -1.9563 35 1 1.5001 1.8409 -1.9563 36 1 4.0441 2.9056 -0.9162 37 1 4.0455 2.6918 -3.3374 38 1 2.5037 3.5812 -3.3368 39 1 4.3228 4.9544 -4.7749 40 1 5.5433 7.0676 -7.0519 41 1 0.7582 -2.5298 -0.8903 42 1 0.7588 -2.5302 0.8897 43 1 1.9425 -5.5841 0.8720 44 1 0.5562 -4.8292 0.0214 45 1 3.3063 -5.0575 -2.7813 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493815088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:05 Heat of formation + Delta-G solvation = -128.374010 kcal Electronic energy + Delta-G solvation = -28824.596598 eV Core-core repulsion = 24456.694187 eV Total energy + Delta-G solvation = -4367.902411 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.31313 -40.12608 -38.89980 -38.24092 -36.46782 -36.25806 -34.96268 -34.09700 -33.76309 -31.21767 -30.41629 -28.86130 -27.08137 -26.18664 -25.24169 -23.85632 -22.39421 -22.13183 -21.17760 -19.52310 -19.09800 -18.34616 -17.85390 -17.49102 -17.16581 -16.69916 -16.39634 -16.09309 -15.85150 -15.47754 -15.17147 -14.70393 -14.52431 -14.44663 -14.34202 -13.96878 -13.77421 -13.52552 -13.42610 -13.29754 -13.19677 -12.99436 -12.68181 -12.56987 -12.20374 -12.00569 -11.81153 -11.48287 -11.46462 -11.14347 -11.08135 -10.93173 -10.71561 -10.41766 -10.38904 -10.18357 -9.97030 -9.46829 -8.93880 -8.41669 -8.03863 -7.92608 -6.38314 -3.79104 1.06691 2.26439 2.30759 2.39618 2.64758 3.22776 3.27946 3.32685 3.50012 3.65370 3.75274 3.94875 4.04616 4.15958 4.27779 4.45253 4.53054 4.68839 4.75150 4.84591 4.97026 5.00431 5.02230 5.20413 5.22424 5.25754 5.31374 5.32103 5.53712 5.53847 5.80301 5.89573 5.92277 6.03507 6.18031 6.22914 6.32920 6.85783 7.09127 7.22129 7.44911 7.58194 7.68123 7.94672 8.09504 8.64903 9.21018 9.57845 10.09480 10.79451 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019649 B = 0.001806 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.634697 B =15496.974088 C =16385.304839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.617 5.617 3 C 0.119 3.881 4 C 0.046 3.954 5 N -0.667 5.667 6 C 0.052 3.948 7 C 0.442 3.558 8 O -0.583 6.583 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.903 5.903 14 Si 0.932 3.068 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.500 3.500 19 O -0.504 6.504 20 C -0.126 4.126 21 C -0.110 4.110 22 H 0.133 0.867 23 C -0.155 4.155 24 C 0.530 3.470 25 O -0.489 6.489 26 N -0.685 5.685 27 C 0.520 3.480 28 O -0.436 6.436 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.032 0.968 35 H 0.068 0.932 36 H 0.351 0.649 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.099 0.901 42 H 0.113 0.887 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.270 -25.239 12.315 31.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.352 5.352 3 C -0.004 4.004 4 C -0.085 4.085 5 N -0.300 5.300 6 C -0.080 4.080 7 C 0.227 3.773 8 O -0.467 6.467 9 N -0.201 5.201 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.759 3.241 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.287 3.713 19 O -0.378 6.378 20 C -0.167 4.167 21 C -0.132 4.132 22 H 0.151 0.849 23 C -0.195 4.195 24 C 0.318 3.682 25 O -0.361 6.361 26 N -0.352 5.352 27 C 0.305 3.695 28 O -0.302 6.302 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.170 0.830 37 H 0.062 0.938 38 H 0.103 0.897 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.117 0.883 42 H 0.132 0.868 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -13.782 -24.469 12.638 30.796 hybrid contribution 1.028 -0.155 -1.487 1.814 sum -12.754 -24.624 11.151 29.889 Atomic orbital electron populations 1.21851 0.79428 1.03488 1.02004 1.47795 1.06995 1.06126 1.74291 1.21399 0.98213 0.83653 0.97096 1.22253 0.98944 0.90645 0.96685 1.60035 1.28420 1.27817 1.13683 1.21652 1.00182 0.96098 0.90107 1.19796 0.85153 0.87295 0.85033 1.90515 1.59280 1.67281 1.29642 1.41852 1.50069 1.21376 1.06770 1.19662 1.30987 0.97725 0.94518 0.87951 1.25271 0.98208 0.99893 0.94645 1.69605 1.47121 1.40180 0.97481 0.85904 0.79825 0.81371 0.77028 1.19916 1.21006 1.19895 1.20448 0.88354 0.85171 0.77341 1.90847 1.13172 1.86827 1.46956 1.21647 0.98121 0.91247 1.05638 1.21850 0.98110 0.94541 0.98726 0.84908 1.22603 1.03941 0.95583 0.97328 1.20753 0.76965 0.84018 0.86472 1.90832 1.55294 1.18813 1.71131 1.44890 1.45113 1.20132 1.25044 1.20687 0.81553 0.80656 0.86556 1.90949 1.33039 1.37628 1.68633 0.92249 0.90492 0.91249 0.89388 0.89684 0.94963 0.91344 0.82974 0.93809 0.89695 0.77456 0.91847 0.88317 0.86847 0.85682 0.85834 0.74543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.34 10.24 59.84 0.61 0.96 16 2 N -0.62 -5.31 2.87 -181.57 -0.52 -5.83 16 3 C 0.12 1.33 5.67 -4.04 -0.02 1.31 16 4 C 0.05 0.61 6.01 -3.82 -0.02 0.59 16 5 N -0.67 -11.41 6.13 -115.05 -0.70 -12.11 16 6 C 0.05 0.99 6.17 -4.97 -0.03 0.95 16 7 C 0.44 10.84 7.82 -10.98 -0.09 10.76 16 8 O -0.58 -16.29 15.78 5.55 0.09 -16.20 16 9 N -0.56 -14.77 5.29 -10.96 -0.06 -14.82 16 10 C -0.30 -8.55 9.68 -14.93 -0.14 -8.70 16 11 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -25.05 13.05 55.50 0.72 -24.33 16 14 Si 0.93 21.45 29.55 -169.99 -5.02 16.43 16 15 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 C 0.50 4.73 7.35 -10.99 -0.08 4.65 16 19 O -0.50 -7.11 13.15 -17.45 -0.23 -7.34 16 20 C -0.13 -0.54 3.59 -27.89 -0.10 -0.64 16 21 C -0.11 -0.52 2.72 -90.83 -0.25 -0.77 16 22 H 0.13 0.63 8.03 -51.93 -0.42 0.21 16 23 C -0.15 -0.35 6.67 -26.93 -0.18 -0.53 16 24 C 0.53 3.20 8.55 -11.09 -0.09 3.10 16 25 O -0.49 -4.69 18.02 5.60 0.10 -4.59 16 26 N -0.69 -4.43 5.48 -11.39 -0.06 -4.49 16 27 C 0.52 4.42 7.71 -11.09 -0.09 4.34 16 28 O -0.44 -5.98 15.43 -17.40 -0.27 -6.25 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.08 0.37 8.07 -51.92 -0.42 -0.05 16 31 H 0.07 0.17 6.44 -51.93 -0.33 -0.17 16 32 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.08 1.10 7.42 -51.93 -0.39 0.71 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.35 6.33 8.43 -39.30 -0.33 6.00 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 39 H 0.39 9.82 7.90 -40.82 -0.32 9.50 16 40 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.10 0.29 7.40 -51.93 -0.38 -0.10 16 42 H 0.11 0.11 8.11 -51.93 -0.42 -0.31 16 43 H 0.13 0.06 8.14 -51.93 -0.42 -0.36 16 44 H 0.12 0.01 7.74 -51.93 -0.40 -0.40 16 45 H 0.42 2.38 8.96 -40.82 -0.37 2.02 16 LS Contribution 384.63 15.07 5.80 5.80 Total: -1.00 -39.26 384.63 -6.99 -46.24 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -6.25 Total: 10.98 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: -0.58 Total: 16.51 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -0.62 Total: -61.58 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -0.31 Total: -34.38 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -39.26 -6.99 -46.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493815088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.130 kcal (2) G-P(sol) polarization free energy of solvation -39.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds