Wall clock time and date at job start Sat Apr 11 2020 06:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00500 * 2 1 4 4 C 1.52997 * 109.47499 * 270.00352 * 3 2 1 5 5 N 1.46901 * 109.46928 * 179.97438 * 4 3 2 6 6 C 1.46904 * 110.99496 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.46761 * 179.97438 * 6 5 4 8 8 O 1.21286 * 120.00064 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99582 * 179.97438 * 7 6 5 10 10 C 1.37094 * 119.99414 * 180.02562 * 9 7 6 11 11 H 1.08000 * 120.00802 * 0.02562 * 10 9 7 12 12 C 1.38955 * 119.99819 * 179.97438 * 10 9 7 13 13 N 1.31407 * 119.99852 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99985 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.46770 * 60.00420 * 14 12 10 16 16 H 1.48500 * 109.46813 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47224 * 300.00472 * 14 12 10 18 18 C 1.34782 * 119.99639 * 180.02562 * 2 1 3 19 19 O 1.21281 * 119.99870 * 180.02562 * 18 2 1 20 20 C 1.50695 * 119.99779 * 359.97438 * 18 2 1 21 21 C 1.53001 * 109.46788 * 180.02562 * 20 18 2 22 22 H 1.08996 * 110.66703 * 56.48124 * 21 20 18 23 23 C 1.54236 * 110.60660 * 179.40768 * 21 20 18 24 24 C 1.51315 * 103.55147 * 118.51776 * 23 21 20 25 25 O 1.21235 * 125.39508 * 180.02562 * 24 23 21 26 26 N 1.33875 * 109.21241 * 0.02562 * 24 23 21 27 27 C 1.33884 * 114.46988 * 359.97438 * 26 24 23 28 28 O 1.21228 * 125.39038 * 179.97438 * 27 26 24 29 29 H 1.09004 * 109.47272 * 269.99885 * 1 2 3 30 30 H 1.09011 * 109.46832 * 29.99366 * 1 2 3 31 31 H 1.09000 * 109.47520 * 149.99359 * 1 2 3 32 32 H 1.09000 * 109.46780 * 30.00290 * 3 2 1 33 33 H 1.09007 * 109.47276 * 149.99978 * 3 2 1 34 34 H 1.09000 * 109.47053 * 299.99770 * 4 3 2 35 35 H 1.09004 * 109.47130 * 60.00089 * 4 3 2 36 36 H 1.00894 * 111.00250 * 56.05069 * 5 4 3 37 37 H 1.09000 * 109.47366 * 299.99480 * 6 5 4 38 38 H 1.08995 * 109.47229 * 59.99940 * 6 5 4 39 39 H 0.96993 * 120.00215 * 0.02562 * 9 7 6 40 40 H 0.96996 * 120.00239 * 180.02562 * 13 12 10 41 41 H 1.09003 * 109.47331 * 60.00636 * 20 18 2 42 42 H 1.09000 * 109.47303 * 300.00201 * 20 18 2 43 43 H 1.08995 * 110.60911 * 237.03231 * 23 21 20 44 44 H 1.09001 * 110.60231 * 0.02562 * 23 21 20 45 45 H 0.96993 * 122.76850 * 180.26726 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7104 -1.4424 5 7 3.1866 2.9829 -1.4423 6 6 3.4493 3.4391 -2.8138 7 6 4.2016 4.7444 -2.7734 8 8 4.4909 5.2449 -1.7072 9 7 4.5538 5.3549 -3.9223 10 6 5.2386 6.5420 -3.8855 11 1 5.4962 6.9878 -2.9362 12 6 5.6022 7.1712 -5.0699 13 7 5.2892 6.6286 -6.2251 14 14 6.5347 8.7891 -5.0199 15 1 7.8225 8.5962 -4.3062 16 1 6.8007 9.2500 -6.4063 17 1 5.7216 9.8073 -4.3077 18 6 2.1388 -1.1673 -0.0005 19 8 3.3516 -1.1673 -0.0001 20 6 1.3852 -2.4723 -0.0005 21 6 2.3794 -3.6352 -0.0005 22 1 3.0574 -3.5617 0.8497 23 6 1.6348 -4.9859 0.0144 24 6 2.0685 -5.6441 -1.2772 25 8 1.7104 -6.7360 -1.6636 26 7 2.9103 -4.8298 -1.9256 27 6 3.1558 -3.6726 -1.2987 28 8 3.8851 -2.7942 -1.7063 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3634 -0.8899 -0.5139 32 1 1.6085 2.0283 0.5139 33 1 3.1500 1.1383 0.5139 34 1 3.0416 0.9508 -1.9563 35 1 1.5001 1.8409 -1.9563 36 1 4.0441 2.9056 -0.9162 37 1 4.0455 2.6918 -3.3374 38 1 2.5037 3.5812 -3.3368 39 1 4.3228 4.9544 -4.7749 40 1 5.5433 7.0676 -7.0519 41 1 0.7582 -2.5298 -0.8903 42 1 0.7588 -2.5302 0.8897 43 1 1.9425 -5.5841 0.8720 44 1 0.5562 -4.8292 0.0214 45 1 3.3063 -5.0575 -2.7813 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493815088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:04 Heat of formation + Delta-G solvation = -161.796171 kcal Electronic energy + Delta-G solvation = -28826.045892 eV Core-core repulsion = 24456.694187 eV Total energy + Delta-G solvation = -4369.351705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.84086 -40.81479 -40.18027 -39.57091 -37.49332 -36.94669 -36.20185 -35.69383 -34.54750 -33.30764 -31.35787 -29.50095 -28.03284 -27.17310 -26.24828 -25.30683 -23.35897 -22.64950 -21.77677 -21.15123 -20.06293 -19.85103 -18.93206 -18.11397 -17.88348 -17.77492 -17.29366 -17.07765 -16.86261 -16.57890 -16.48364 -15.94976 -15.71249 -15.46119 -15.28591 -15.03424 -14.97112 -14.76331 -14.29488 -13.96330 -13.88763 -13.74149 -13.55512 -13.47397 -13.37153 -13.06669 -12.98432 -12.87247 -12.69290 -12.45440 -12.16262 -12.13156 -12.03239 -11.70216 -11.52781 -11.38078 -11.01794 -10.68381 -10.42212 -10.05198 -9.60827 -9.46797 -8.48717 -5.98188 0.50975 1.38772 1.40397 1.52015 1.73606 1.75374 1.83529 2.00226 2.01941 2.28568 2.93995 3.16027 3.17666 3.24088 3.37787 3.52264 3.71492 3.86066 4.04491 4.13482 4.23758 4.28358 4.42145 4.46418 4.48147 4.54258 4.56643 4.66157 4.78976 4.82697 4.85758 4.93325 4.99598 5.05077 5.07090 5.38293 5.52455 5.67630 5.81219 6.02803 6.24508 6.34195 6.49378 6.56421 6.88586 7.08998 7.31286 7.51654 8.06614 8.68529 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019649 B = 0.001806 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.634697 B =15496.974088 C =16385.304839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.617 5.617 3 C 0.126 3.874 4 C 0.056 3.944 5 N -0.674 5.674 6 C 0.066 3.934 7 C 0.438 3.562 8 O -0.621 6.621 9 N -0.572 5.572 10 C -0.337 4.337 11 H 0.080 0.920 12 C -0.015 4.015 13 N -0.921 5.921 14 Si 0.997 3.003 15 H -0.272 1.272 16 H -0.269 1.269 17 H -0.270 1.270 18 C 0.487 3.513 19 O -0.562 6.562 20 C -0.118 4.118 21 C -0.104 4.104 22 H 0.134 0.866 23 C -0.133 4.133 24 C 0.531 3.469 25 O -0.526 6.526 26 N -0.685 5.685 27 C 0.517 3.483 28 O -0.499 6.499 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.011 0.989 35 H 0.086 0.914 36 H 0.342 0.658 37 H 0.055 0.945 38 H 0.109 0.891 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.120 0.880 42 H 0.161 0.839 43 H 0.153 0.847 44 H 0.161 0.839 45 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.975 -26.301 13.205 33.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.351 5.351 3 C 0.002 3.998 4 C -0.074 4.074 5 N -0.306 5.306 6 C -0.067 4.067 7 C 0.225 3.775 8 O -0.508 6.508 9 N -0.209 5.209 10 C -0.466 4.466 11 H 0.098 0.902 12 C -0.214 4.214 13 N -0.561 5.561 14 Si 0.820 3.180 15 H -0.197 1.197 16 H -0.194 1.194 17 H -0.195 1.195 18 C 0.276 3.724 19 O -0.439 6.439 20 C -0.158 4.158 21 C -0.126 4.126 22 H 0.151 0.849 23 C -0.172 4.172 24 C 0.321 3.679 25 O -0.401 6.401 26 N -0.350 5.350 27 C 0.305 3.695 28 O -0.370 6.370 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.029 0.971 35 H 0.104 0.896 36 H 0.160 0.840 37 H 0.073 0.927 38 H 0.127 0.873 39 H 0.230 0.770 40 H 0.088 0.912 41 H 0.138 0.862 42 H 0.179 0.821 43 H 0.170 0.830 44 H 0.179 0.821 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -16.564 -25.576 13.523 33.337 hybrid contribution 1.852 0.122 -1.780 2.572 sum -14.712 -25.454 11.743 31.658 Atomic orbital electron populations 1.22166 0.76491 1.04865 1.03843 1.47934 1.08695 1.04869 1.73636 1.21148 0.97928 0.85608 0.95160 1.22268 0.98523 0.88233 0.98424 1.60084 1.28101 1.29950 1.12443 1.21522 1.00484 0.93035 0.91620 1.20763 0.84258 0.88542 0.83926 1.90481 1.60622 1.68767 1.30896 1.41923 1.50324 1.21190 1.07459 1.19667 1.33258 0.99391 0.94285 0.90165 1.26109 0.98407 1.02990 0.93918 1.69670 1.47158 1.41342 0.97950 0.84941 0.78321 0.77079 0.77691 1.19745 1.19383 1.19484 1.21471 0.88107 0.86872 0.75918 1.90835 1.15928 1.87714 1.49461 1.21795 0.97719 0.87397 1.08844 1.21907 0.98121 0.96413 0.96138 0.84862 1.22703 1.05623 0.93306 0.95550 1.21423 0.75853 0.83255 0.87320 1.90824 1.56564 1.20433 1.72271 1.45021 1.44971 1.19926 1.25077 1.21429 0.80600 0.79864 0.87598 1.90924 1.35901 1.39775 1.70390 0.90127 0.90749 0.88349 0.88182 0.92228 0.97057 0.89597 0.83992 0.92683 0.87333 0.77003 0.91222 0.86173 0.82095 0.82973 0.82116 0.74879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.36 10.24 127.77 1.31 1.67 16 2 N -0.62 -9.51 2.87 -846.75 -2.43 -11.95 16 3 C 0.13 2.79 5.67 86.38 0.49 3.28 16 4 C 0.06 1.49 6.01 86.30 0.52 2.01 16 5 N -0.67 -23.31 6.13 -517.91 -3.17 -26.48 16 6 C 0.07 2.48 6.17 85.56 0.53 3.01 16 7 C 0.44 21.99 7.82 87.66 0.69 22.67 16 8 O -0.62 -35.85 15.78 -3.05 -0.05 -35.90 16 9 N -0.57 -30.65 5.29 -306.98 -1.62 -32.27 16 10 C -0.34 -19.71 9.68 84.04 0.81 -18.89 16 11 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 12 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 13 N -0.92 -50.90 13.05 21.66 0.28 -50.62 16 14 Si 1.00 43.85 29.55 68.60 2.03 45.88 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 16 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 C 0.49 8.57 7.35 87.65 0.64 9.21 16 19 O -0.56 -16.40 13.15 18.96 0.25 -16.15 16 20 C -0.12 -0.54 3.59 29.85 0.11 -0.44 16 21 C -0.10 -0.72 2.72 -10.93 -0.03 -0.75 16 22 H 0.13 1.00 8.03 -2.39 -0.02 0.98 16 23 C -0.13 -0.03 6.67 30.46 0.20 0.17 16 24 C 0.53 5.41 8.55 87.99 0.75 6.16 16 25 O -0.53 -9.45 18.02 -2.89 -0.05 -9.50 16 26 N -0.69 -8.64 5.48 -427.78 -2.34 -10.99 16 27 C 0.52 8.73 7.71 87.99 0.68 9.41 16 28 O -0.50 -14.58 15.43 19.12 0.29 -14.29 16 29 H 0.08 0.13 8.14 -2.38 -0.02 0.11 16 30 H 0.07 0.47 8.07 -2.38 -0.02 0.45 16 31 H 0.10 -0.04 6.44 -2.39 -0.02 -0.05 16 32 H 0.10 1.95 8.07 -2.39 -0.02 1.93 16 33 H 0.06 1.63 7.42 -2.38 -0.02 1.61 16 34 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.34 12.87 8.43 -89.70 -0.76 12.11 16 37 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 39 H 0.40 20.19 7.90 -92.71 -0.73 19.46 16 40 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 41 H 0.12 0.11 7.40 -2.39 -0.02 0.09 16 42 H 0.16 -0.72 8.11 -2.39 -0.02 -0.74 16 43 H 0.15 -0.62 8.14 -2.39 -0.02 -0.63 16 44 H 0.16 -1.02 7.74 -2.39 -0.02 -1.04 16 45 H 0.41 5.09 8.96 -92.71 -0.83 4.26 16 Total: -1.00 -91.75 384.63 -0.90 -92.65 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: -1.25 Total: 32.42 kcal Atomic # 6 Polarization: 30.02 SS G_CDS: 7.17 Total: 37.19 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -9.29 Total: -132.30 kcal Atomic # 8 Polarization: -76.28 SS G_CDS: 0.44 Total: -75.84 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -91.75 -0.90 -92.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493815088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.147 kcal (2) G-P(sol) polarization free energy of solvation -91.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds