Wall clock time and date at job start Sat Apr 11 2020 06:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99916 * 2 1 4 4 C 1.52998 * 109.47013 * 269.99691 * 3 2 1 5 5 N 1.46903 * 109.46562 * 179.97438 * 4 3 2 6 6 C 1.46903 * 110.99653 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47147 * 180.02562 * 6 5 4 8 8 O 1.21295 * 120.00219 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00104 * 179.97438 * 7 6 5 10 10 C 1.37099 * 119.99980 * 179.97438 * 9 7 6 11 11 H 1.07994 * 119.99882 * 0.02562 * 10 9 7 12 12 C 1.38950 * 119.99521 * 180.02562 * 10 9 7 13 13 N 1.31401 * 120.00530 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99622 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46911 * 59.99917 * 14 12 10 16 16 H 1.48501 * 109.47113 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46921 * 300.00244 * 14 12 10 18 18 C 1.34778 * 120.00172 * 179.97438 * 2 1 3 19 19 O 1.21280 * 120.00231 * 180.02562 * 18 2 1 20 20 C 1.50697 * 119.99576 * 0.02562 * 18 2 1 21 21 C 1.53008 * 109.46687 * 179.97438 * 20 18 2 22 22 H 1.08994 * 110.54410 * 307.84659 * 21 20 18 23 23 C 1.54231 * 110.60269 * 184.99765 * 21 20 18 24 24 C 1.51312 * 103.55315 * 241.48132 * 23 21 20 25 25 O 1.21237 * 125.39560 * 180.02562 * 24 23 21 26 26 N 1.33879 * 109.21201 * 0.02562 * 24 23 21 27 27 C 1.33875 * 114.47187 * 0.26907 * 26 24 23 28 28 O 1.21223 * 125.39810 * 179.70941 * 27 26 24 29 29 H 1.08993 * 109.47400 * 270.00117 * 1 2 3 30 30 H 1.09000 * 109.47304 * 30.00489 * 1 2 3 31 31 H 1.09004 * 109.46541 * 150.00096 * 1 2 3 32 32 H 1.09007 * 109.46680 * 30.00075 * 3 2 1 33 33 H 1.08996 * 109.47083 * 149.99127 * 3 2 1 34 34 H 1.08997 * 109.47161 * 299.99710 * 4 3 2 35 35 H 1.08994 * 109.46974 * 60.00071 * 4 3 2 36 36 H 1.00896 * 111.00568 * 56.04684 * 5 4 3 37 37 H 1.09000 * 109.47088 * 300.00370 * 6 5 4 38 38 H 1.08999 * 109.47130 * 60.00095 * 6 5 4 39 39 H 0.97000 * 119.99686 * 0.02562 * 9 7 6 40 40 H 0.97002 * 120.00417 * 180.02562 * 13 12 10 41 41 H 1.08994 * 109.47672 * 59.99820 * 20 18 2 42 42 H 1.09004 * 109.47527 * 299.99413 * 20 18 2 43 43 H 1.09000 * 110.60238 * 122.97085 * 23 21 20 44 44 H 1.08994 * 110.61026 * 0.02562 * 23 21 20 45 45 H 0.97001 * 122.76260 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1865 2.9829 -1.4424 6 6 3.4493 3.4391 -2.8138 7 6 4.2024 4.7437 -2.7736 8 8 4.4915 5.2445 -1.7074 9 7 4.5549 5.3541 -3.9224 10 6 5.2397 6.5413 -3.8858 11 1 5.4970 6.9871 -2.9364 12 6 5.6025 7.1707 -5.0702 13 7 5.2890 6.6285 -6.2253 14 14 6.5362 8.7880 -5.0203 15 1 7.8246 8.5939 -4.3078 16 1 6.8024 9.2488 -6.4067 17 1 5.7245 9.8063 -4.3068 18 6 2.1389 -1.1672 0.0005 19 8 3.3517 -1.1672 0.0010 20 6 1.3854 -2.4722 0.0005 21 6 2.3797 -3.6352 0.0005 22 1 3.1042 -3.5190 -0.8054 23 6 1.6393 -4.9823 -0.1252 24 6 1.9978 -5.7048 1.1550 25 8 1.6201 -6.8145 1.4644 26 7 2.7983 -4.9247 1.8918 27 6 3.0734 -3.7356 1.3416 28 8 3.7704 -2.8767 1.8377 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3632 -0.8901 -0.5139 32 1 1.6083 2.0284 0.5139 33 1 3.1498 1.1385 0.5139 34 1 3.0417 0.9508 -1.9562 35 1 1.5002 1.8407 -1.9563 36 1 4.0439 2.9059 -0.9161 37 1 4.0454 2.6918 -3.3374 38 1 2.5036 3.5811 -3.3369 39 1 4.3234 4.9538 -4.7751 40 1 5.5426 7.0678 -7.0522 41 1 0.7591 -2.5302 -0.8896 42 1 0.7584 -2.5299 0.8903 43 1 1.9975 -5.5374 -0.9922 44 1 0.5628 -4.8240 -0.1883 45 1 3.1466 -5.1968 2.7553 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493815089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:07 Heat of formation + Delta-G solvation = -129.422762 kcal Electronic energy + Delta-G solvation = -28589.472922 eV Core-core repulsion = 24221.525034 eV Total energy + Delta-G solvation = -4367.947889 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.34718 -40.14208 -38.95298 -38.26161 -36.50663 -36.28353 -34.98718 -34.12499 -33.78118 -31.23492 -30.43363 -28.87992 -27.09480 -26.21257 -25.26858 -23.87285 -22.43064 -22.13636 -21.22239 -19.54939 -19.11503 -18.38904 -17.87053 -17.52421 -17.15588 -16.78250 -16.37960 -16.10485 -15.88188 -15.51853 -15.20751 -14.74257 -14.55618 -14.43174 -14.39757 -13.97380 -13.80785 -13.60024 -13.42815 -13.26211 -13.23160 -13.02281 -12.66603 -12.60874 -12.19053 -11.98295 -11.88568 -11.50399 -11.48322 -11.16572 -11.08919 -10.94811 -10.77233 -10.43561 -10.42734 -10.19841 -10.02013 -9.48264 -8.95350 -8.43771 -8.06376 -7.94239 -6.39905 -3.80698 1.02275 2.22027 2.27199 2.38117 2.62891 3.21834 3.27143 3.31909 3.48521 3.63517 3.71892 3.93003 4.03054 4.14583 4.26046 4.45666 4.56844 4.65250 4.69819 4.86768 4.96465 4.98007 5.01986 5.20310 5.20839 5.24288 5.29408 5.31432 5.49009 5.51907 5.75649 5.85822 5.91745 6.00314 6.13126 6.21057 6.30877 6.80966 7.08135 7.19761 7.39635 7.56812 7.65348 7.92992 8.08002 8.63271 9.19597 9.56098 10.07773 10.77796 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027279 B = 0.001611 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.196724 B =17374.781899 C =17556.100420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.616 5.616 3 C 0.117 3.883 4 C 0.047 3.953 5 N -0.667 5.667 6 C 0.053 3.947 7 C 0.441 3.559 8 O -0.583 6.583 9 N -0.564 5.564 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.504 3.496 19 O -0.509 6.509 20 C -0.127 4.127 21 C -0.111 4.111 22 H 0.135 0.865 23 C -0.155 4.155 24 C 0.531 3.469 25 O -0.488 6.488 26 N -0.685 5.685 27 C 0.524 3.476 28 O -0.444 6.444 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.352 0.648 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.114 0.886 42 H 0.098 0.902 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.263 -25.209 9.536 30.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.351 5.351 3 C -0.005 4.005 4 C -0.083 4.083 5 N -0.300 5.300 6 C -0.080 4.080 7 C 0.226 3.774 8 O -0.467 6.467 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.290 3.710 19 O -0.383 6.383 20 C -0.167 4.167 21 C -0.133 4.133 22 H 0.153 0.847 23 C -0.195 4.195 24 C 0.319 3.681 25 O -0.360 6.360 26 N -0.351 5.351 27 C 0.309 3.691 28 O -0.310 6.310 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.171 0.829 37 H 0.062 0.938 38 H 0.103 0.897 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.132 0.868 42 H 0.116 0.884 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -13.800 -24.455 10.403 29.945 hybrid contribution 1.011 -0.165 -0.533 1.155 sum -12.789 -24.620 9.869 29.447 Atomic orbital electron populations 1.21856 0.79393 1.03545 1.01999 1.47785 1.07015 1.06124 1.74202 1.21418 0.98352 0.83671 0.97088 1.22242 0.98936 0.90556 0.96610 1.60015 1.28509 1.27835 1.13690 1.21647 1.00173 0.96103 0.90056 1.19802 0.85190 0.87331 0.85044 1.90524 1.59261 1.67242 1.29648 1.41852 1.50059 1.21380 1.06753 1.19666 1.31022 0.97728 0.94536 0.87951 1.25257 0.98171 0.99867 0.94629 1.69600 1.47120 1.40182 0.97482 0.85911 0.79837 0.81383 0.77037 1.19921 1.20995 1.19884 1.20416 0.88297 0.85159 0.77123 1.90821 1.13295 1.86874 1.47291 1.21651 0.98130 0.91265 1.05636 1.21876 0.98986 0.94596 0.97857 0.84681 1.22611 1.04335 0.95029 0.97513 1.20764 0.76436 0.84689 0.86256 1.90834 1.52778 1.17757 1.74615 1.44874 1.47530 1.18893 1.23827 1.20682 0.80316 0.80558 0.87495 1.90915 1.33417 1.40521 1.66177 0.92444 0.90387 0.91085 0.89399 0.89616 0.95151 0.91226 0.82907 0.93845 0.89655 0.77465 0.91844 0.86787 0.88352 0.85605 0.85789 0.74584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.34 10.24 59.85 0.61 0.95 16 2 N -0.62 -5.30 2.87 -181.57 -0.52 -5.82 16 3 C 0.12 1.31 5.67 -4.04 -0.02 1.29 16 4 C 0.05 0.60 6.01 -3.82 -0.02 0.58 16 5 N -0.67 -11.06 6.13 -115.06 -0.70 -11.77 16 6 C 0.05 0.96 6.17 -4.98 -0.03 0.93 16 7 C 0.44 10.62 7.82 -10.99 -0.09 10.53 16 8 O -0.58 -16.12 15.78 5.54 0.09 -16.03 16 9 N -0.56 -14.50 5.29 -10.96 -0.06 -14.56 16 10 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 11 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 14 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 15 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 C 0.50 4.76 7.36 -10.99 -0.08 4.68 16 19 O -0.51 -7.16 13.54 -15.66 -0.21 -7.37 16 20 C -0.13 -0.54 3.55 -27.88 -0.10 -0.64 16 21 C -0.11 -0.53 2.70 -90.82 -0.25 -0.78 16 22 H 0.14 0.71 7.89 -51.93 -0.41 0.30 16 23 C -0.16 -0.35 6.67 -26.94 -0.18 -0.53 16 24 C 0.53 3.00 8.55 -11.09 -0.09 2.91 16 25 O -0.49 -4.50 18.02 5.59 0.10 -4.40 16 26 N -0.68 -3.99 5.48 -11.39 -0.06 -4.05 16 27 C 0.52 4.17 7.71 -11.08 -0.09 4.09 16 28 O -0.44 -5.70 15.89 -15.61 -0.25 -5.94 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 31 H 0.07 0.14 6.44 -51.93 -0.33 -0.20 16 32 H 0.09 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.09 1.15 7.42 -51.93 -0.39 0.76 16 34 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.35 6.20 8.43 -39.29 -0.33 5.87 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.39 9.61 7.90 -40.82 -0.32 9.28 16 40 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.11 0.13 7.40 -51.93 -0.38 -0.25 16 42 H 0.10 0.27 8.08 -51.93 -0.42 -0.14 16 43 H 0.13 0.09 8.14 -51.93 -0.42 -0.34 16 44 H 0.12 0.00 7.74 -51.93 -0.40 -0.40 16 45 H 0.41 2.02 8.96 -40.82 -0.37 1.65 16 LS Contribution 385.27 15.07 5.81 5.81 Total: -1.00 -38.84 385.27 -6.93 -45.77 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -6.24 Total: 10.24 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: -0.58 Total: 15.89 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.62 Total: -60.17 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -0.27 Total: -33.74 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.84 -6.93 -45.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493815089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.655 kcal (2) G-P(sol) polarization free energy of solvation -38.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds