Wall clock time and date at job start Sat Apr 11 2020 06:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.46946 * 2 1 4 4 N 1.28432 * 125.18723 * 264.76904 * 3 2 1 5 5 C 1.30847 * 110.97927 * 180.02562 * 4 3 2 6 6 C 1.39802 * 107.87584 * 359.77884 * 5 4 3 7 7 Cl 1.73602 * 127.33934 * 180.26402 * 6 5 4 8 8 C 1.36750 * 125.18470 * 84.82047 * 3 2 1 9 9 C 1.47034 * 126.90557 * 359.92250 * 8 3 2 10 10 O 1.21639 * 119.99533 * 173.93174 * 9 8 3 11 11 N 1.34770 * 119.99639 * 353.93211 * 9 8 3 12 12 C 1.46505 * 119.99893 * 175.68149 * 11 9 8 13 13 C 1.53002 * 110.01396 * 65.22731 * 12 11 9 14 14 N 1.46496 * 109.47452 * 58.24460 * 13 12 11 15 15 C 1.36942 * 119.99972 * 174.91762 * 14 13 12 16 16 H 1.08002 * 119.99886 * 0.02562 * 15 14 13 17 17 C 1.38814 * 119.99598 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00350 * 359.72910 * 17 15 14 19 19 Si 1.86802 * 119.99400 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47507 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46751 * 120.00506 * 19 17 15 22 22 H 1.48504 * 109.47128 * 239.99966 * 19 17 15 23 23 C 1.54263 * 110.07705 * 186.64225 * 12 11 9 24 24 C 1.54886 * 104.19707 * 95.69628 * 23 12 11 25 25 C 1.54893 * 102.74769 * 37.94255 * 24 23 12 26 26 C 1.53874 * 110.03260 * 303.83564 * 12 11 9 27 27 H 1.09004 * 109.47061 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47493 * 299.99942 * 1 2 3 29 29 H 1.09007 * 109.47141 * 60.00279 * 1 2 3 30 30 H 1.09004 * 109.46994 * 240.00025 * 2 1 3 31 31 H 1.09000 * 109.46975 * 120.00367 * 2 1 3 32 32 H 1.08000 * 126.05881 * 180.02562 * 5 4 3 33 33 H 0.97001 * 120.00720 * 355.68302 * 11 9 8 34 34 H 1.09007 * 109.47054 * 298.24497 * 13 12 11 35 35 H 1.09006 * 109.46992 * 178.25188 * 13 12 11 36 36 H 0.96994 * 120.00071 * 354.92140 * 14 13 12 37 37 H 0.97002 * 120.00179 * 179.97438 * 18 17 15 38 38 H 1.09003 * 110.48860 * 214.37700 * 23 12 11 39 39 H 1.09004 * 110.48499 * 337.01763 * 23 12 11 40 40 H 1.09006 * 110.75516 * 279.63057 * 24 23 12 41 41 H 1.09000 * 110.75763 * 156.25735 * 24 23 12 42 42 H 1.08992 * 110.48834 * 203.38151 * 25 24 23 43 43 H 1.08999 * 110.48403 * 80.73412 * 25 24 23 44 44 H 1.09001 * 110.02878 * 359.95409 * 26 12 11 45 45 H 1.09003 * 110.03113 * 121.37607 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3552 2.0471 -1.0453 5 6 2.7509 3.2526 -0.7254 6 6 2.6563 3.3809 0.6635 7 17 3.0478 4.7749 1.6213 8 6 2.1858 2.1578 1.1131 9 6 1.9145 1.7741 2.5063 10 8 2.2124 2.5275 3.4136 11 7 1.3358 0.5877 2.7780 12 6 1.1515 0.1638 4.1682 13 6 0.1694 1.1000 4.8753 14 7 -1.1096 1.0960 4.1610 15 6 -2.1800 1.7820 4.6697 16 1 -2.0812 2.3264 5.5972 17 6 -3.3918 1.7786 3.9925 18 7 -3.5104 1.1204 2.8589 19 14 -4.8518 2.7151 4.6859 20 1 -4.4590 3.3729 5.9580 21 1 -5.2873 3.7461 3.7099 22 1 -5.9696 1.7712 4.9407 23 6 0.6262 -1.2859 4.2147 24 6 1.9002 -2.1457 4.4063 25 6 2.7524 -1.2837 5.3707 26 6 2.5034 0.1652 4.9033 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.0868 4.0147 -1.4129 33 1 1.0412 0.0143 2.0531 34 1 0.5759 2.1113 4.8870 35 1 0.0151 0.7586 5.8990 36 1 -1.1982 0.6073 3.3279 37 1 -4.3572 1.1178 2.3859 38 1 -0.0537 -1.4186 5.0563 39 1 0.1303 -1.5421 3.2784 40 1 2.4165 -2.2881 3.4569 41 1 1.6540 -3.1051 4.8611 42 1 3.8081 -1.5382 5.2780 43 1 2.4158 -1.4159 6.3989 44 1 3.2966 0.4805 4.2254 45 1 2.4598 0.8329 5.7638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495161848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:13 Heat of formation + Delta-G solvation = 56.139440 kcal Electronic energy + Delta-G solvation = -29270.420607 eV Core-core repulsion = 25351.228464 eV Total energy + Delta-G solvation = -3919.192143 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.70808 -40.06709 -37.52506 -36.43037 -35.17827 -34.31358 -32.97173 -31.26016 -30.50106 -29.92626 -28.69229 -27.99535 -24.63962 -24.29029 -23.10907 -22.24922 -21.62684 -20.82139 -20.12011 -19.21472 -17.96462 -17.12162 -16.35357 -16.10217 -15.87695 -15.17510 -15.08992 -14.69091 -14.45916 -14.29548 -14.09227 -13.61973 -13.44009 -13.21048 -13.03370 -12.92435 -12.71112 -12.24050 -11.89707 -11.72254 -11.67285 -11.64511 -11.51189 -11.19861 -11.01524 -10.96471 -10.84351 -10.72692 -10.53774 -10.46540 -10.40706 -10.02811 -9.73848 -9.63549 -9.33012 -8.85977 -8.78237 -8.61606 -6.86997 -5.76466 -3.02100 1.16966 1.88792 2.41329 2.68217 3.18380 3.40617 3.44165 3.50912 3.52445 4.19027 4.47946 4.58956 4.66968 4.70633 4.76913 4.85135 4.86157 4.99463 5.10675 5.34883 5.47125 5.51798 5.55625 5.60808 5.61106 5.63896 5.72090 5.81951 5.89381 5.96403 6.10824 6.11473 6.16680 6.24611 6.30733 6.43432 6.45988 6.50824 6.54599 6.85354 7.05006 7.62532 7.74063 7.83620 8.37561 8.43320 9.55245 10.12038 10.47930 11.46953 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008477 B = 0.005042 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3302.195194 B = 5551.682537 C = 6682.787814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.103 3.897 3 N -0.267 5.267 4 N -0.265 5.265 5 C 0.011 3.989 6 C -0.090 4.090 7 Cl -0.008 7.008 8 C -0.015 4.015 9 C 0.590 3.410 10 O -0.497 6.497 11 N -0.714 5.714 12 C 0.168 3.832 13 C 0.144 3.856 14 N -0.726 5.726 15 C -0.229 4.229 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.936 5.936 19 Si 0.904 3.096 20 H -0.281 1.281 21 H -0.293 1.293 22 H -0.293 1.293 23 C -0.118 4.118 24 C -0.126 4.126 25 C -0.124 4.124 26 C -0.118 4.118 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.194 0.806 33 H 0.394 0.606 34 H 0.040 0.960 35 H 0.029 0.971 36 H 0.379 0.621 37 H 0.252 0.748 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.226 -6.029 -5.535 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.017 4.017 3 N -0.057 5.057 4 N -0.097 5.097 5 C -0.166 4.166 6 C -0.128 4.128 7 Cl 0.020 6.980 8 C -0.144 4.144 9 C 0.374 3.626 10 O -0.369 6.369 11 N -0.371 5.371 12 C 0.082 3.918 13 C 0.015 3.985 14 N -0.370 5.370 15 C -0.360 4.360 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.586 5.586 19 Si 0.736 3.264 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.220 1.220 23 C -0.156 4.156 24 C -0.164 4.164 25 C -0.162 4.162 26 C -0.157 4.157 27 H 0.109 0.891 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.131 0.869 31 H 0.119 0.881 32 H 0.211 0.789 33 H 0.234 0.766 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.213 0.787 37 H 0.062 0.938 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 15.163 -6.130 -5.527 17.264 hybrid contribution -1.064 0.859 0.272 1.394 sum 14.099 -5.271 -5.255 15.943 Atomic orbital electron populations 1.22394 0.91640 1.04838 1.05517 1.22352 0.97184 0.76586 1.05539 1.45760 1.45209 1.12285 1.02472 1.73172 1.16440 1.06268 1.13819 1.23512 1.05315 0.94917 0.92857 1.21287 1.08822 0.90236 0.92502 1.98361 1.92164 1.36769 1.70683 1.21616 1.10107 0.93029 0.89658 1.16674 0.78599 0.81966 0.85368 1.90854 1.51463 1.50120 1.44445 1.46590 1.61507 1.19810 1.09191 1.21351 0.95300 0.94795 0.80333 1.21184 0.86123 0.97104 0.94042 1.42194 1.06451 1.61454 1.26894 1.19282 0.89214 1.23050 1.04498 0.91244 1.24658 0.97842 1.01149 0.97415 1.69634 1.24977 1.47104 1.16862 0.86143 0.82999 0.79182 0.78069 1.20609 1.22020 1.22003 1.22600 0.97286 0.92138 1.03549 1.22548 0.96222 0.98319 0.99267 1.22385 0.99418 0.94950 0.99425 1.22420 0.96007 0.96625 1.00622 0.89060 0.89788 0.90609 0.86864 0.88104 0.78932 0.76579 0.94191 0.95289 0.78725 0.93809 0.89129 0.91229 0.92016 0.91420 0.91968 0.91396 0.91467 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.17 9.56 37.16 0.36 -1.82 16 2 C 0.10 1.05 6.20 -4.04 -0.03 1.03 16 3 N -0.27 -3.65 3.35 -57.11 -0.19 -3.85 16 4 N -0.27 -3.67 11.89 30.61 0.36 -3.31 16 5 C 0.01 0.15 12.04 -17.39 -0.21 -0.06 16 6 C -0.09 -1.41 6.87 -38.88 -0.27 -1.67 16 7 Cl -0.01 -0.13 28.15 -51.86 -1.46 -1.59 16 8 C -0.02 -0.25 6.96 -81.99 -0.57 -0.82 16 9 C 0.59 10.37 6.84 -12.70 -0.09 10.28 16 10 O -0.50 -9.97 13.08 5.24 0.07 -9.90 16 11 N -0.71 -11.02 4.16 -47.75 -0.20 -11.22 16 12 C 0.17 2.65 0.56 -130.70 -0.07 2.57 16 13 C 0.14 2.97 4.66 -4.04 -0.02 2.95 16 14 N -0.73 -17.84 5.25 -59.90 -0.31 -18.15 16 15 C -0.23 -6.41 9.99 -15.06 -0.15 -6.56 16 16 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 17 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 18 N -0.94 -27.40 13.06 55.49 0.72 -26.67 16 19 Si 0.90 22.67 29.55 -169.99 -5.02 17.65 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 23 C -0.12 -1.61 5.59 -25.08 -0.14 -1.75 16 24 C -0.13 -1.34 6.91 -24.74 -0.17 -1.51 16 25 C -0.12 -1.37 6.83 -25.07 -0.17 -1.55 16 26 C -0.12 -1.65 5.21 -25.61 -0.13 -1.79 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 1.31 7.05 -51.93 -0.37 0.94 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.10 0.90 5.95 -51.93 -0.31 0.59 16 32 H 0.19 1.87 8.06 -52.49 -0.42 1.44 16 33 H 0.39 5.28 2.67 -40.82 -0.11 5.17 16 34 H 0.04 0.93 6.50 -51.93 -0.34 0.60 16 35 H 0.03 0.60 8.11 -51.93 -0.42 0.18 16 36 H 0.38 9.46 7.20 -40.82 -0.29 9.16 16 37 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.09 1.38 7.83 -51.93 -0.41 0.97 16 39 H 0.07 0.93 7.70 -51.93 -0.40 0.53 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.98 6.97 -51.93 -0.36 0.62 16 45 H 0.08 1.14 7.67 -51.93 -0.40 0.74 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -33.03 372.37 -8.51 -41.53 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -6.33 Total: 11.11 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.76 Total: -1.22 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: 0.38 Total: -63.20 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.07 Total: -9.90 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.46 Total: -1.59 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.03 -8.51 -41.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495161848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.674 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds