Wall clock time and date at job start Sat Apr 11 2020 06:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.46946 * 2 1 4 4 N 1.28432 * 125.18723 * 264.76904 * 3 2 1 5 5 C 1.30847 * 110.97927 * 180.02562 * 4 3 2 6 6 C 1.39802 * 107.87584 * 359.77884 * 5 4 3 7 7 Cl 1.73602 * 127.33934 * 180.26402 * 6 5 4 8 8 C 1.36750 * 125.18470 * 84.82047 * 3 2 1 9 9 C 1.47034 * 126.90557 * 359.92250 * 8 3 2 10 10 O 1.21639 * 119.99533 * 173.93174 * 9 8 3 11 11 N 1.34770 * 119.99639 * 353.93211 * 9 8 3 12 12 C 1.46505 * 119.99893 * 175.68149 * 11 9 8 13 13 C 1.53002 * 110.01396 * 65.22731 * 12 11 9 14 14 N 1.46496 * 109.47452 * 58.24460 * 13 12 11 15 15 C 1.36942 * 119.99972 * 174.91762 * 14 13 12 16 16 H 1.08002 * 119.99886 * 0.02562 * 15 14 13 17 17 C 1.38814 * 119.99598 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00350 * 359.72910 * 17 15 14 19 19 Si 1.86802 * 119.99400 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47507 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46751 * 120.00506 * 19 17 15 22 22 H 1.48504 * 109.47128 * 239.99966 * 19 17 15 23 23 C 1.54263 * 110.07705 * 186.64225 * 12 11 9 24 24 C 1.54886 * 104.19707 * 95.69628 * 23 12 11 25 25 C 1.54893 * 102.74769 * 37.94255 * 24 23 12 26 26 C 1.53874 * 110.03260 * 303.83564 * 12 11 9 27 27 H 1.09004 * 109.47061 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47493 * 299.99942 * 1 2 3 29 29 H 1.09007 * 109.47141 * 60.00279 * 1 2 3 30 30 H 1.09004 * 109.46994 * 240.00025 * 2 1 3 31 31 H 1.09000 * 109.46975 * 120.00367 * 2 1 3 32 32 H 1.08000 * 126.05881 * 180.02562 * 5 4 3 33 33 H 0.97001 * 120.00720 * 355.68302 * 11 9 8 34 34 H 1.09007 * 109.47054 * 298.24497 * 13 12 11 35 35 H 1.09006 * 109.46992 * 178.25188 * 13 12 11 36 36 H 0.96994 * 120.00071 * 354.92140 * 14 13 12 37 37 H 0.97002 * 120.00179 * 179.97438 * 18 17 15 38 38 H 1.09003 * 110.48860 * 214.37700 * 23 12 11 39 39 H 1.09004 * 110.48499 * 337.01763 * 23 12 11 40 40 H 1.09006 * 110.75516 * 279.63057 * 24 23 12 41 41 H 1.09000 * 110.75763 * 156.25735 * 24 23 12 42 42 H 1.08992 * 110.48834 * 203.38151 * 25 24 23 43 43 H 1.08999 * 110.48403 * 80.73412 * 25 24 23 44 44 H 1.09001 * 110.02878 * 359.95409 * 26 12 11 45 45 H 1.09003 * 110.03113 * 121.37607 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3552 2.0471 -1.0453 5 6 2.7509 3.2526 -0.7254 6 6 2.6563 3.3809 0.6635 7 17 3.0478 4.7749 1.6213 8 6 2.1858 2.1578 1.1131 9 6 1.9145 1.7741 2.5063 10 8 2.2124 2.5275 3.4136 11 7 1.3358 0.5877 2.7780 12 6 1.1515 0.1638 4.1682 13 6 0.1694 1.1000 4.8753 14 7 -1.1096 1.0960 4.1610 15 6 -2.1800 1.7820 4.6697 16 1 -2.0812 2.3264 5.5972 17 6 -3.3918 1.7786 3.9925 18 7 -3.5104 1.1204 2.8589 19 14 -4.8518 2.7151 4.6859 20 1 -4.4590 3.3729 5.9580 21 1 -5.2873 3.7461 3.7099 22 1 -5.9696 1.7712 4.9407 23 6 0.6262 -1.2859 4.2147 24 6 1.9002 -2.1457 4.4063 25 6 2.7524 -1.2837 5.3707 26 6 2.5034 0.1652 4.9033 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.0868 4.0147 -1.4129 33 1 1.0412 0.0143 2.0531 34 1 0.5759 2.1113 4.8870 35 1 0.0151 0.7586 5.8990 36 1 -1.1982 0.6073 3.3279 37 1 -4.3572 1.1178 2.3859 38 1 -0.0537 -1.4186 5.0563 39 1 0.1303 -1.5421 3.2784 40 1 2.4165 -2.2881 3.4569 41 1 1.6540 -3.1051 4.8611 42 1 3.8081 -1.5382 5.2780 43 1 2.4158 -1.4159 6.3989 44 1 3.2966 0.4805 4.2254 45 1 2.4598 0.8329 5.7638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495161848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:13 Heat of formation + Delta-G solvation = 34.898579 kcal Electronic energy + Delta-G solvation = -29271.341680 eV Core-core repulsion = 25351.228464 eV Total energy + Delta-G solvation = -3920.113216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.80920 -41.36302 -38.81210 -37.61562 -36.22068 -36.17206 -34.25967 -33.05398 -31.85364 -30.95336 -29.79986 -29.45293 -26.38426 -25.36197 -24.36916 -23.92787 -22.72357 -21.89331 -21.20154 -20.54669 -19.16650 -19.09435 -17.46823 -17.41861 -17.03474 -16.58126 -16.24373 -16.17858 -15.84965 -15.52007 -15.46008 -15.03365 -14.75105 -14.66468 -14.48723 -14.06221 -13.92441 -13.51640 -13.23143 -13.15165 -12.89897 -12.84039 -12.83245 -12.69235 -12.45735 -12.25468 -12.16681 -11.98053 -11.90937 -11.80275 -11.72785 -11.57431 -11.39274 -11.15752 -10.83021 -10.44264 -10.11432 -9.83385 -8.95196 -7.95986 -5.21196 -0.05165 0.79286 1.33261 1.43046 1.44892 1.53753 1.58965 1.90811 2.11335 2.53993 3.22410 3.36316 3.41298 3.53053 3.69258 3.77802 3.82970 3.91686 3.96650 4.13173 4.17679 4.27315 4.39420 4.51155 4.56115 4.61861 4.66590 4.68376 4.78178 4.83837 4.91715 5.07651 5.09440 5.10848 5.17332 5.20427 5.26064 5.33148 5.47490 5.48196 5.50561 5.61847 6.26656 6.36998 6.73179 7.06609 7.35005 8.08001 8.37288 9.26752 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008477 B = 0.005042 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3302.195194 B = 5551.682537 C = 6682.787814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.098 3.902 3 N -0.260 5.260 4 N -0.264 5.264 5 C 0.017 3.983 6 C -0.107 4.107 7 Cl -0.016 7.016 8 C -0.041 4.041 9 C 0.585 3.415 10 O -0.531 6.531 11 N -0.703 5.703 12 C 0.170 3.830 13 C 0.145 3.855 14 N -0.728 5.728 15 C -0.242 4.242 16 H 0.063 0.937 17 C -0.066 4.066 18 N -0.958 5.958 19 Si 0.964 3.036 20 H -0.274 1.274 21 H -0.297 1.297 22 H -0.287 1.287 23 C -0.116 4.116 24 C -0.113 4.113 25 C -0.117 4.117 26 C -0.113 4.113 27 H 0.118 0.882 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.149 0.851 31 H 0.115 0.885 32 H 0.227 0.773 33 H 0.404 0.596 34 H 0.010 0.990 35 H 0.028 0.972 36 H 0.377 0.623 37 H 0.250 0.750 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.067 -7.886 -6.481 19.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.020 4.020 3 N -0.051 5.051 4 N -0.096 5.096 5 C -0.160 4.160 6 C -0.146 4.146 7 Cl 0.012 6.988 8 C -0.170 4.170 9 C 0.369 3.631 10 O -0.406 6.406 11 N -0.360 5.360 12 C 0.084 3.916 13 C 0.018 3.982 14 N -0.371 5.371 15 C -0.374 4.374 16 H 0.081 0.919 17 C -0.259 4.259 18 N -0.608 5.608 19 Si 0.794 3.206 20 H -0.199 1.199 21 H -0.224 1.224 22 H -0.214 1.214 23 C -0.154 4.154 24 C -0.151 4.151 25 C -0.155 4.155 26 C -0.152 4.152 27 H 0.137 0.863 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.167 0.833 31 H 0.133 0.867 32 H 0.243 0.757 33 H 0.246 0.754 34 H 0.028 0.972 35 H 0.046 0.954 36 H 0.210 0.790 37 H 0.059 0.941 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.014 -8.022 -6.476 19.046 hybrid contribution -1.336 1.479 0.557 2.069 sum 14.678 -6.544 -5.919 17.126 Atomic orbital electron populations 1.22333 0.92757 1.05826 1.02873 1.22683 0.96070 0.75314 1.07982 1.46071 1.44387 1.13040 1.01563 1.73188 1.16296 1.06516 1.13620 1.24040 1.04335 0.95345 0.92259 1.21599 1.09339 0.90048 0.93585 1.98350 1.92220 1.37089 1.71104 1.21550 1.11605 0.94098 0.89727 1.16963 0.78250 0.82035 0.85805 1.90828 1.53050 1.51142 1.45606 1.46533 1.60654 1.19455 1.09403 1.21316 0.95121 0.94848 0.80273 1.21218 0.85670 0.96897 0.94457 1.42242 1.07059 1.60868 1.26935 1.19546 0.90432 1.23082 1.04360 0.91911 1.25347 1.00115 1.02404 0.97998 1.69752 1.25300 1.48116 1.17681 0.85219 0.80070 0.77885 0.77466 1.19931 1.22443 1.21426 1.22568 0.98754 0.91083 1.03020 1.22527 0.94045 0.98228 1.00261 1.22380 1.00944 0.92442 0.99727 1.22353 0.94492 0.98747 0.99619 0.86313 0.94064 0.91437 0.83324 0.86682 0.75681 0.75357 0.97243 0.95393 0.79038 0.94083 0.90850 0.90919 0.90098 0.89363 0.89805 0.90971 0.91998 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.00 9.56 71.98 0.69 -3.31 16 2 C 0.10 1.78 6.20 86.38 0.54 2.32 16 3 N -0.26 -6.78 3.35 -334.58 -1.12 -7.91 16 4 N -0.26 -6.83 11.89 -57.06 -0.68 -7.51 16 5 C 0.02 0.42 12.04 85.22 1.03 1.44 16 6 C -0.11 -3.33 6.87 22.72 0.16 -3.17 16 7 Cl -0.02 -0.51 28.15 -2.72 -0.08 -0.59 16 8 C -0.04 -1.32 6.96 40.76 0.28 -1.03 16 9 C 0.58 21.00 6.84 86.55 0.59 21.59 16 10 O -0.53 -22.25 13.08 -4.15 -0.05 -22.31 16 11 N -0.70 -21.77 4.16 -423.24 -1.76 -23.54 16 12 C 0.17 5.40 0.56 4.33 0.00 5.40 16 13 C 0.15 6.23 4.66 86.38 0.40 6.64 16 14 N -0.73 -36.83 5.25 -343.43 -1.80 -38.64 16 15 C -0.24 -13.85 9.99 84.03 0.84 -13.01 16 16 H 0.06 3.60 7.83 -2.91 -0.02 3.57 16 17 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 18 N -0.96 -56.64 13.06 21.65 0.28 -56.36 16 19 Si 0.96 47.04 29.55 68.60 2.03 49.06 16 20 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 C -0.12 -3.05 5.59 31.67 0.18 -2.87 16 24 C -0.11 -2.04 6.91 31.89 0.22 -1.82 16 25 C -0.12 -2.31 6.83 31.67 0.22 -2.10 16 26 C -0.11 -3.14 5.21 31.32 0.16 -2.97 16 27 H 0.12 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.04 1.29 7.05 -2.39 -0.02 1.27 16 29 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.15 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.12 1.77 5.95 -2.39 -0.01 1.75 16 32 H 0.23 3.83 8.06 -2.91 -0.02 3.81 16 33 H 0.40 10.59 2.67 -92.71 -0.25 10.34 16 34 H 0.01 0.48 6.50 -2.38 -0.02 0.46 16 35 H 0.03 1.20 8.11 -2.38 -0.02 1.18 16 36 H 0.38 19.27 7.20 -92.71 -0.67 18.60 16 37 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 38 H 0.07 2.19 7.83 -2.39 -0.02 2.17 16 39 H 0.07 1.85 7.70 -2.38 -0.02 1.83 16 40 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.06 1.79 6.97 -2.39 -0.02 1.77 16 45 H 0.06 1.82 7.67 -2.39 -0.02 1.80 16 Total: -1.00 -73.35 372.37 2.70 -70.66 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: 0.11 Total: 33.32 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 5.77 Total: 3.80 kcal Atomic # 7 Polarization: -128.86 SS G_CDS: -5.08 Total: -133.94 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.06 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.08 Total: -0.59 kcal Total: -73.35 2.70 -70.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495161848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.555 kcal (2) G-P(sol) polarization free energy of solvation -73.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds