Wall clock time and date at job start Sat Apr 11 2020 06:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28463 * 124.88585 * 2 1 4 4 C 1.31803 * 110.11071 * 180.18306 * 3 2 1 5 5 C 1.47719 * 126.50947 * 179.81896 * 4 3 2 6 6 O 1.21572 * 119.99902 * 173.32940 * 5 4 3 7 7 N 1.34770 * 120.00101 * 353.32884 * 5 4 3 8 8 C 1.46933 * 120.63133 * 354.81554 * 7 5 4 9 9 C 1.53196 * 108.76491 * 126.36272 * 8 7 5 10 10 C 1.53031 * 109.31128 * 54.65609 * 9 8 7 11 11 C 1.53041 * 109.53029 * 298.61370 * 10 9 8 12 12 H 1.09001 * 109.49971 * 301.42185 * 11 10 9 13 13 C 1.53004 * 109.50022 * 181.35334 * 11 10 9 14 14 C 1.53003 * 109.46917 * 174.99894 * 13 11 10 15 15 N 1.46502 * 109.46538 * 180.02562 * 14 13 11 16 16 C 1.36942 * 119.99729 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99485 * 359.97438 * 16 15 14 18 18 C 1.38807 * 119.99872 * 180.02562 * 16 15 14 19 19 N 1.31614 * 120.00487 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99712 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47332 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46991 * 119.99863 * 20 18 16 23 23 H 1.48500 * 109.47180 * 239.99782 * 20 18 16 24 24 C 1.46919 * 120.63398 * 174.79692 * 7 5 4 25 25 C 1.41499 * 106.97858 * 359.55708 * 4 3 2 26 26 C 1.35071 * 124.88299 * 179.68236 * 2 1 3 27 27 Cl 1.73598 * 126.40414 * 0.04243 * 26 2 1 28 28 H 1.08997 * 109.46963 * 270.31505 * 1 2 3 29 29 H 1.08992 * 109.47174 * 30.31706 * 1 2 3 30 30 H 1.09000 * 109.47038 * 150.31600 * 1 2 3 31 31 H 1.08996 * 109.58658 * 246.15753 * 8 7 5 32 32 H 1.09001 * 109.58369 * 6.58615 * 8 7 5 33 33 H 1.09002 * 109.50432 * 294.69774 * 9 8 7 34 34 H 1.09002 * 109.48592 * 174.60279 * 9 8 7 35 35 H 1.08999 * 109.46047 * 178.59988 * 10 9 8 36 36 H 1.08998 * 109.46105 * 58.62736 * 10 9 8 37 37 H 1.08991 * 109.47114 * 295.00527 * 13 11 10 38 38 H 1.09003 * 109.46243 * 55.00493 * 13 11 10 39 39 H 1.08998 * 109.47123 * 300.00042 * 14 13 11 40 40 H 1.08993 * 109.46882 * 60.00770 * 14 13 11 41 41 H 0.96998 * 120.00565 * 0.02562 * 15 14 13 42 42 H 0.97001 * 120.00624 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.59340 * 113.84165 * 24 7 5 44 44 H 1.09007 * 109.58669 * 353.41429 * 24 7 5 45 45 H 1.08001 * 127.26004 * 180.30413 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1997 1.0538 0.0000 4 6 3.4741 0.7176 -0.0040 5 6 4.6267 1.6416 -0.0090 6 8 5.7555 1.2059 0.1099 7 7 4.4270 2.9674 -0.1456 8 6 3.0818 3.4992 -0.4035 9 6 2.7640 4.5670 0.6479 10 6 3.8693 5.6254 0.6444 11 6 5.2045 4.9720 1.0083 12 1 5.1252 4.5041 1.9895 13 6 6.3030 6.0367 1.0375 14 6 7.6107 5.4070 1.5219 15 7 8.6622 6.4267 1.5505 16 6 9.9280 6.0937 1.9534 17 1 10.1508 5.0795 2.2504 18 6 10.9242 7.0599 1.9810 19 7 10.6525 8.2959 1.6194 20 14 12.6510 6.6054 2.5299 21 1 12.6953 5.1633 2.8813 22 1 13.6082 6.8764 1.4274 23 1 13.0221 7.4155 3.7179 24 6 5.5501 3.9085 -0.0389 25 6 3.5286 -0.6963 0.0038 26 6 2.2374 -1.1080 0.0061 27 17 1.6805 -2.7522 0.0142 28 1 -0.3633 0.0057 1.0276 29 1 -0.3633 0.8871 -0.5187 30 1 -0.3633 -0.8928 -0.5089 31 1 3.0493 3.9442 -1.3980 32 1 2.3513 2.6928 -0.3377 33 1 2.7078 4.1029 1.6326 34 1 1.8094 5.0371 0.4117 35 1 3.6331 6.3996 1.3744 36 1 3.9418 6.0715 -0.3475 37 1 6.4438 6.4411 0.0353 38 1 6.0130 6.8392 1.7158 39 1 7.4698 5.0027 2.5242 40 1 7.9005 4.6046 0.8437 41 1 8.4620 7.3376 1.2840 42 1 11.3488 8.9710 1.6384 43 1 5.7189 4.3870 -1.0036 44 1 6.4483 3.3723 0.2676 45 1 4.4127 -1.3166 0.0078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495371356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:20 Heat of formation + Delta-G solvation = 57.578735 kcal Electronic energy + Delta-G solvation = -27052.369818 eV Core-core repulsion = 23133.240087 eV Total energy + Delta-G solvation = -3919.129731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.24322 -40.05768 -37.73934 -37.43599 -35.30428 -34.14204 -33.36149 -32.08952 -31.13730 -30.50418 -28.38897 -27.23439 -25.72045 -24.13859 -22.98876 -22.51963 -21.93754 -20.79345 -20.25455 -19.45209 -17.88911 -17.17303 -16.98468 -16.86542 -16.03143 -15.29113 -14.88924 -14.78779 -14.60764 -14.54087 -14.09774 -13.72395 -13.67339 -13.49732 -13.38181 -13.22819 -13.09141 -12.93951 -12.69759 -12.54366 -12.38694 -11.94038 -11.51949 -11.20848 -11.06809 -10.99251 -10.81054 -10.67263 -10.41885 -10.36808 -10.15143 -10.01312 -9.81289 -9.66099 -9.56896 -9.47944 -8.77981 -8.62750 -6.82147 -5.68214 -2.96088 0.95184 1.03658 1.50918 1.96423 2.92158 3.17627 3.49956 3.55634 3.58367 3.73523 4.28623 4.44978 4.60727 4.64532 4.73735 4.75236 4.86778 4.88691 4.96294 5.05156 5.12253 5.27417 5.45628 5.53305 5.63791 5.70863 5.72313 5.79369 5.81847 5.85385 5.98266 6.05487 6.11403 6.15008 6.29557 6.38140 6.42624 6.51571 6.63237 6.97362 7.00617 7.20347 7.40225 7.80312 8.06992 8.51320 9.62203 10.21255 10.55950 11.55031 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019175 B = 0.002130 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.868639 B =13142.710566 C =14395.216060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.278 5.278 3 N -0.241 5.241 4 C 0.006 3.994 5 C 0.599 3.401 6 O -0.524 6.524 7 N -0.595 5.595 8 C 0.075 3.925 9 C -0.129 4.129 10 C -0.117 4.117 11 C -0.095 4.095 12 H 0.074 0.926 13 C -0.118 4.118 14 C 0.150 3.850 15 N -0.734 5.734 16 C -0.234 4.234 17 H 0.071 0.929 18 C -0.018 4.018 19 N -0.936 5.936 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.115 3.885 25 C -0.150 4.150 26 C 0.051 3.949 27 Cl 0.004 6.996 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.131 0.869 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.017 0.983 40 H 0.022 0.978 41 H 0.383 0.617 42 H 0.253 0.747 43 H 0.071 0.929 44 H 0.101 0.899 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.626 -18.478 -5.863 35.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.068 5.068 3 N -0.077 5.077 4 C -0.153 4.153 5 C 0.384 3.616 6 O -0.398 6.398 7 N -0.328 5.328 8 C -0.049 4.049 9 C -0.167 4.167 10 C -0.154 4.154 11 C -0.115 4.115 12 H 0.092 0.908 13 C -0.156 4.156 14 C 0.022 3.978 15 N -0.378 5.378 16 C -0.365 4.365 17 H 0.089 0.911 18 C -0.213 4.213 19 N -0.585 5.585 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.220 1.220 24 C -0.007 4.007 25 C -0.178 4.178 26 C -0.099 4.099 27 Cl 0.032 6.968 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.148 0.852 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.035 0.965 40 H 0.039 0.961 41 H 0.216 0.784 42 H 0.063 0.937 43 H 0.089 0.911 44 H 0.119 0.881 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -29.768 -18.076 -5.742 35.297 hybrid contribution 1.150 -0.614 0.238 1.325 sum -28.619 -18.690 -5.504 34.621 Atomic orbital electron populations 1.22323 0.72619 1.06019 1.05193 1.45746 1.08185 1.01775 1.51050 1.73375 1.03200 1.10699 1.20420 1.21918 0.90715 0.93743 1.08915 1.16887 0.86289 0.81271 0.77135 1.90845 1.22494 1.76416 1.50006 1.47950 1.09942 1.05097 1.69770 1.22656 0.84407 0.99622 0.98171 1.21853 0.98695 0.96561 0.99593 1.21619 0.94147 0.97595 1.02062 1.21462 0.95010 0.95882 0.99133 0.90800 1.21730 0.94584 0.97374 1.01948 1.20725 0.87344 0.92403 0.97287 1.42389 1.06492 1.08516 1.80439 1.19318 0.86481 0.94957 1.35789 0.91111 1.24740 0.98267 0.95651 1.02660 1.69671 1.32641 1.01370 1.54819 0.86112 0.84845 0.77476 0.77803 1.20511 1.21904 1.21951 1.21894 0.89261 0.90152 0.99353 1.21494 0.95512 0.93836 1.07004 1.21937 0.91153 0.83720 1.13118 1.98413 1.89626 1.11511 1.97293 0.89012 0.87712 0.88403 0.91889 0.85210 0.91709 0.91057 0.91546 0.91735 0.91754 0.91544 0.96503 0.96070 0.78378 0.93679 0.91088 0.88115 0.80745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.22 11.14 59.84 0.67 0.89 16 2 N -0.28 -2.08 3.70 -64.88 -0.24 -2.32 16 3 N -0.24 -2.34 8.36 33.42 0.28 -2.06 16 4 C 0.01 0.07 6.88 -82.76 -0.57 -0.49 16 5 C 0.60 8.72 7.70 -12.39 -0.10 8.63 16 6 O -0.52 -9.39 16.37 5.30 0.09 -9.30 16 7 N -0.60 -7.78 2.97 -173.92 -0.52 -8.30 16 8 C 0.07 0.75 6.33 -3.70 -0.02 0.73 16 9 C -0.13 -1.21 6.08 -26.61 -0.16 -1.37 16 10 C -0.12 -1.27 5.17 -26.69 -0.14 -1.41 16 11 C -0.10 -1.30 2.34 -90.49 -0.21 -1.51 16 12 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 13 C -0.12 -1.95 4.80 -26.73 -0.13 -2.08 16 14 C 0.15 3.19 6.02 -4.04 -0.02 3.17 16 15 N -0.73 -19.60 5.60 -59.91 -0.34 -19.93 16 16 C -0.23 -6.89 9.99 -15.06 -0.15 -7.05 16 17 H 0.07 2.04 7.83 -52.48 -0.41 1.63 16 18 C -0.02 -0.53 5.50 -17.43 -0.10 -0.63 16 19 N -0.94 -29.23 13.06 55.49 0.72 -28.50 16 20 Si 0.91 23.30 29.55 -169.99 -5.02 18.28 16 21 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 24 C 0.11 1.64 5.31 -3.71 -0.02 1.62 16 25 C -0.15 -1.56 10.80 -39.31 -0.42 -1.99 16 26 C 0.05 0.42 7.44 -17.10 -0.13 0.30 16 27 Cl 0.00 0.02 28.67 -51.86 -1.49 -1.46 16 28 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.10 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.10 0.12 7.71 -51.93 -0.40 -0.28 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.13 1.24 3.74 -111.20 -0.42 0.82 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.02 0.46 6.70 -51.93 -0.35 0.12 16 41 H 0.38 10.59 7.67 -40.82 -0.31 10.28 16 42 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.10 1.69 5.76 -51.93 -0.30 1.39 16 45 H 0.18 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 378.58 15.07 5.71 5.71 Total: -1.00 -35.27 378.58 -9.13 -44.40 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.82 Total: 4.68 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.50 Total: -1.18 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -0.09 Total: -61.11 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -5.02 Total: 18.28 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -1.49 Total: -1.46 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.27 -9.13 -44.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495371356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.977 kcal (2) G-P(sol) polarization free energy of solvation -35.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds