Wall clock time and date at job start Sat Apr 11 2020 06:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42900 * 109.46913 * 2 1 4 4 C 1.35353 * 117.00157 * 179.97438 * 3 2 1 5 5 N 1.30550 * 125.45047 * 180.02562 * 4 3 2 6 6 C 1.36325 * 108.38482 * 180.02562 * 5 4 3 7 7 C 1.47372 * 126.41212 * 179.97438 * 6 5 4 8 8 O 1.21623 * 119.99999 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00032 * 0.03109 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27569 * 9 7 6 11 11 H 1.09004 * 109.47372 * 34.71852 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72131 * 10 9 7 13 13 C 1.52999 * 109.46963 * 154.72290 * 10 9 7 14 14 N 1.46897 * 109.47028 * 304.99535 * 13 10 9 15 15 C 1.46900 * 110.99871 * 180.02562 * 14 13 10 16 16 C 1.50703 * 109.47363 * 180.02562 * 15 14 13 17 17 O 1.21296 * 119.99828 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00341 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99820 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00423 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99524 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00443 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99941 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47189 * 59.99533 * 23 21 19 25 25 H 1.48496 * 109.47218 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47025 * 300.00137 * 23 21 19 27 27 C 1.35917 * 107.17510 * 0.26466 * 6 5 4 28 28 O 1.34203 * 125.44320 * 0.02888 * 4 3 2 29 29 H 1.09004 * 109.46987 * 59.99905 * 1 2 3 30 30 H 1.09000 * 109.47054 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47509 * 300.00190 * 1 2 3 32 32 H 1.08999 * 109.47578 * 240.00551 * 2 1 3 33 33 H 1.08992 * 109.47362 * 119.99917 * 2 1 3 34 34 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 35 35 H 1.09009 * 109.47238 * 300.00198 * 12 10 9 36 36 H 1.08997 * 109.47293 * 60.00168 * 12 10 9 37 37 H 1.09003 * 109.47189 * 180.02562 * 12 10 9 38 38 H 1.08995 * 109.47415 * 64.99597 * 13 10 9 39 39 H 1.09008 * 109.47087 * 184.99936 * 13 10 9 40 40 H 1.00899 * 110.99995 * 303.95385 * 14 13 10 41 41 H 1.08997 * 109.47551 * 299.99854 * 15 14 13 42 42 H 1.08999 * 109.47259 * 60.00546 * 15 14 13 43 43 H 0.97001 * 120.00098 * 359.97438 * 18 16 15 44 44 H 0.96998 * 120.00302 * 180.02562 * 22 21 19 45 45 H 1.08003 * 126.45278 * 179.73332 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3481 1.5247 0.0005 5 7 3.9593 2.6783 0.0011 6 6 5.3038 2.4525 0.0009 7 6 6.3629 3.4773 0.0009 8 8 7.5323 3.1431 0.0003 9 7 6.0356 4.7847 0.0016 10 6 7.0885 5.8033 -0.0045 11 1 7.9339 5.4485 -0.5939 12 6 7.5449 6.0736 1.4305 13 6 6.5448 7.0949 -0.6186 14 7 5.9972 6.8106 -1.9517 15 6 5.4654 8.0307 -2.5735 16 6 4.9130 7.7003 -3.9361 17 8 4.9575 6.5605 -4.3485 18 7 4.3695 8.6713 -4.6966 19 6 3.8665 8.3706 -5.9360 20 1 3.9062 7.3557 -6.3032 21 6 3.3058 9.3716 -6.7197 22 7 3.2580 10.6066 -6.2732 23 14 2.6211 8.9621 -8.4088 24 1 1.5327 7.9612 -8.2723 25 1 2.0841 10.1956 -9.0376 26 1 3.7029 8.4041 -9.2595 27 6 5.4845 1.1054 -0.0057 28 8 4.2629 0.5428 0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 5.1029 5.0511 0.0018 35 1 6.6994 6.4284 2.0201 36 1 7.9322 5.1535 1.8681 37 1 8.3280 6.8318 1.4260 38 1 5.7579 7.4974 0.0192 39 1 7.3509 7.8236 -0.7048 40 1 6.6906 6.3768 -2.5425 41 1 4.6710 8.4400 -1.9494 42 1 6.2642 8.7655 -2.6733 43 1 4.3336 9.5828 -4.3666 44 1 2.8662 11.3053 -6.8201 45 1 6.4308 0.5850 -0.0117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497845189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:30 Heat of formation + Delta-G solvation = -113.475124 kcal Electronic energy + Delta-G solvation = -28789.551498 eV Core-core repulsion = 24422.295151 eV Total energy + Delta-G solvation = -4367.256347 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.53951 -40.80273 -40.12519 -39.93318 -37.81095 -36.09066 -36.02633 -35.09662 -33.26048 -32.92248 -31.97378 -30.49713 -28.95171 -26.72919 -25.74948 -24.64927 -24.43257 -23.48890 -22.13548 -21.51472 -21.03339 -20.14462 -19.88934 -18.65120 -18.45867 -17.97638 -17.41752 -17.34721 -16.62356 -16.57725 -16.35263 -16.10347 -16.06080 -15.79446 -15.33435 -15.15705 -14.90149 -14.72023 -14.38997 -14.03250 -13.93519 -13.57915 -13.55191 -13.37796 -13.08024 -12.98736 -12.78902 -12.72366 -12.68723 -12.51949 -12.43607 -12.12845 -11.92153 -11.82763 -11.78394 -11.50571 -11.31857 -10.35892 -10.10999 -10.01450 -9.72849 -9.31945 -8.46716 -5.95400 0.03111 0.82932 0.92570 1.39220 1.40692 1.51814 1.67784 2.06383 2.11616 2.25764 2.29055 2.90476 3.20626 3.36084 3.54734 3.73207 3.82570 3.91289 3.94927 4.08880 4.18718 4.25047 4.33403 4.37947 4.41070 4.52630 4.59944 4.65305 4.67006 4.77336 4.81324 4.83504 4.85316 5.05247 5.17260 5.30281 5.40273 5.50047 5.63586 5.87738 6.09789 6.33117 6.34692 6.60690 6.61154 7.12369 7.12878 7.56831 8.12992 8.70548 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008166 B = 0.002624 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3427.930459 B =10666.820224 C =13358.295594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 O -0.260 6.260 4 C 0.381 3.619 5 N -0.483 5.483 6 C -0.077 4.077 7 C 0.603 3.397 8 O -0.568 6.568 9 N -0.685 5.685 10 C 0.143 3.857 11 H 0.074 0.926 12 C -0.152 4.152 13 C 0.054 3.946 14 N -0.683 5.683 15 C 0.067 3.933 16 C 0.436 3.564 17 O -0.625 6.625 18 N -0.573 5.573 19 C -0.335 4.335 20 H 0.076 0.924 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.992 3.008 24 H -0.273 1.273 25 H -0.268 1.268 26 H -0.272 1.272 27 C 0.023 3.977 28 O -0.216 6.216 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.413 0.587 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.340 0.660 41 H 0.107 0.893 42 H 0.070 0.930 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.274 -16.326 19.215 25.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 O -0.168 6.168 4 C 0.134 3.866 5 N -0.230 5.230 6 C -0.195 4.195 7 C 0.388 3.612 8 O -0.448 6.448 9 N -0.334 5.334 10 C 0.039 3.961 11 H 0.092 0.908 12 C -0.210 4.210 13 C -0.075 4.075 14 N -0.315 5.315 15 C -0.065 4.065 16 C 0.224 3.776 17 O -0.512 6.512 18 N -0.211 5.211 19 C -0.465 4.465 20 H 0.094 0.906 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.815 3.185 24 H -0.198 1.198 25 H -0.193 1.193 26 H -0.197 1.197 27 C -0.049 4.049 28 O -0.107 6.107 29 H 0.082 0.918 30 H 0.132 0.868 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.249 0.751 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.158 0.842 41 H 0.125 0.875 42 H 0.088 0.912 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 0.869 -16.632 19.102 25.343 hybrid contribution 0.188 0.204 -1.184 1.216 sum 1.057 -16.428 17.918 24.332 Atomic orbital electron populations 1.21867 0.89917 1.05110 1.03765 1.23438 0.97903 0.77753 1.04149 1.86428 1.08071 1.33370 1.88969 1.23339 0.84170 0.81508 0.97534 1.71042 1.04607 1.22867 1.24449 1.21711 0.89993 0.94998 1.12801 1.16766 0.85963 0.82403 0.76019 1.90781 1.18717 1.81979 1.53347 1.45746 1.11562 1.04440 1.71637 1.21133 0.89939 0.87023 0.98028 0.90795 1.22064 1.02482 1.02405 0.94063 1.22395 0.99941 0.95617 0.89591 1.60038 1.41677 1.25313 1.04431 1.21532 1.00627 0.92445 0.91923 1.20971 0.83009 0.85199 0.88456 1.90504 1.62829 1.22522 1.75298 1.41917 1.53128 1.10326 1.15686 1.19609 1.37150 0.95997 0.93725 0.90597 1.26019 0.97298 0.94499 1.03359 1.69658 1.45526 1.01003 1.39893 0.85014 0.78499 0.77840 0.77133 1.19811 1.19284 1.19739 1.25593 0.86611 0.92171 1.00532 1.84414 1.16072 1.38583 1.71605 0.91824 0.86838 0.91110 0.90045 0.89206 0.75064 0.91160 0.93039 0.89367 0.88828 0.91354 0.84155 0.87473 0.91182 0.76901 0.91254 0.71538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 71.98 0.74 -0.60 16 2 C 0.04 0.52 6.38 71.98 0.46 0.98 16 3 O -0.26 -5.78 10.19 -64.22 -0.65 -6.43 16 4 C 0.38 9.61 8.98 130.43 1.17 10.78 16 5 N -0.48 -14.43 11.10 -419.39 -4.65 -19.08 16 6 C -0.08 -2.11 6.99 40.31 0.28 -1.82 16 7 C 0.60 17.66 7.78 86.65 0.67 18.33 16 8 O -0.57 -18.26 16.55 -4.10 -0.07 -18.33 16 9 N -0.69 -18.34 4.80 -445.85 -2.14 -20.48 16 10 C 0.14 3.23 2.82 44.99 0.13 3.36 16 11 H 0.07 1.91 7.57 -2.39 -0.02 1.89 16 12 C -0.15 -2.62 9.49 71.98 0.68 -1.93 16 13 C 0.05 1.16 5.24 86.30 0.45 1.61 16 14 N -0.68 -21.51 5.85 -517.93 -3.03 -24.54 16 15 C 0.07 2.27 6.17 85.56 0.53 2.80 16 16 C 0.44 21.19 7.82 87.66 0.69 21.88 16 17 O -0.63 -35.88 15.78 -3.08 -0.05 -35.93 16 18 N -0.57 -29.94 5.29 -306.98 -1.62 -31.56 16 19 C -0.34 -19.46 9.68 84.04 0.81 -18.65 16 20 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 21 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 22 N -0.92 -50.17 13.05 21.66 0.28 -49.89 16 23 Si 0.99 43.66 29.55 68.60 2.03 45.68 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 C 0.02 0.48 11.93 67.28 0.80 1.28 16 28 O -0.22 -4.41 10.20 18.86 0.19 -4.22 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.41 11.54 8.33 -92.71 -0.77 10.77 16 35 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.34 11.88 8.43 -89.69 -0.76 11.12 16 41 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 42 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.40 19.53 7.90 -92.71 -0.73 18.80 16 44 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 45 H 0.27 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -77.89 396.18 -3.03 -80.92 By element: Atomic # 1 Polarization: 47.24 SS G_CDS: -1.21 Total: 46.03 kcal Atomic # 6 Polarization: 29.94 SS G_CDS: 7.89 Total: 37.83 kcal Atomic # 7 Polarization: -134.39 SS G_CDS: -11.16 Total: -145.56 kcal Atomic # 8 Polarization: -64.33 SS G_CDS: -0.58 Total: -64.91 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -77.89 -3.03 -80.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497845189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.553 kcal (2) G-P(sol) polarization free energy of solvation -77.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds