Wall clock time and date at job start Sat Apr 11 2020 06:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86806 * 120.00108 * 2 1 4 4 H 1.48496 * 109.47136 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47054 * 300.00307 * 3 2 1 6 6 H 1.48497 * 109.46698 * 60.00252 * 3 2 1 7 7 C 1.38799 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00155 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00211 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00317 * 180.02562 * 9 7 2 11 11 C 1.50692 * 109.47525 * 180.02562 * 10 9 7 12 12 O 1.21289 * 120.00068 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00633 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00262 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.47009 * 179.97438 * 14 13 11 16 16 C 1.52994 * 109.47197 * 180.02562 * 15 14 13 17 17 C 1.53041 * 109.45988 * 175.00028 * 16 15 14 18 18 C 1.53198 * 109.30956 * 181.38601 * 17 16 15 19 19 N 1.46923 * 108.77633 * 305.36231 * 18 17 16 20 20 C 1.34778 * 120.63348 * 233.59108 * 19 18 17 21 21 O 1.21279 * 119.99711 * 359.97438 * 20 19 18 22 22 C 1.50701 * 119.99999 * 180.02562 * 20 19 18 23 23 C 1.53001 * 117.51956 * 111.28092 * 22 20 19 24 24 C 1.52999 * 60.00190 * 107.47765 * 23 22 20 25 25 C 1.46934 * 118.73731 * 53.86534 * 19 18 17 26 26 C 1.53048 * 109.45984 * 295.07037 * 16 15 14 27 27 H 0.97003 * 119.99714 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46986 * 59.99742 * 10 9 7 29 29 H 1.09006 * 109.46915 * 300.00426 * 10 9 7 30 30 H 0.97003 * 119.99508 * 359.97438 * 13 11 10 31 31 H 1.08995 * 109.47047 * 60.00583 * 14 13 11 32 32 H 1.09001 * 109.47408 * 299.99883 * 14 13 11 33 33 H 1.09002 * 109.46887 * 60.00023 * 15 14 13 34 34 H 1.09001 * 109.46962 * 300.00183 * 15 14 13 35 35 H 1.08999 * 109.44988 * 55.03409 * 16 15 14 36 36 H 1.08996 * 109.49353 * 61.43714 * 17 16 15 37 37 H 1.08998 * 109.49676 * 301.33822 * 17 16 15 38 38 H 1.08998 * 109.58092 * 185.57932 * 18 17 16 39 39 H 1.08991 * 109.58549 * 65.15320 * 18 17 16 40 40 H 1.09002 * 115.55088 * 325.57701 * 22 20 19 41 41 H 1.09001 * 117.49733 * 214.97195 * 23 22 20 42 42 H 1.08995 * 117.49577 * 359.97438 * 23 22 20 43 43 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 44 44 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 45 45 H 1.08999 * 109.58534 * 65.92320 * 25 19 18 46 46 H 1.09003 * 109.58700 * 186.35183 * 25 19 18 47 47 H 1.09000 * 109.49355 * 298.56135 * 26 16 15 48 48 H 1.08997 * 109.49809 * 58.66187 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7911 -5.5023 -0.0011 13 7 2.8441 -6.3431 -0.0018 14 6 2.3303 -7.7151 -0.0019 15 6 3.5024 -8.6986 -0.0033 16 6 2.9659 -10.1314 -0.0040 17 6 4.1333 -11.1128 -0.1311 18 6 3.5897 -12.5447 -0.1663 19 7 2.7468 -12.7598 1.0177 20 6 2.9749 -13.8004 1.8432 21 8 3.8828 -14.5704 1.6116 22 6 2.1011 -14.0079 3.0534 23 6 1.1701 -15.2221 3.0534 24 6 2.4097 -15.2085 3.9502 25 6 1.6466 -11.8223 1.2813 26 6 2.2153 -10.3954 1.3034 27 1 -0.4850 0.8401 0.0004 28 1 3.1244 -3.7313 0.8894 29 1 3.1245 -3.7313 -0.8905 30 1 3.8009 -6.1835 -0.0022 31 1 1.7214 -7.8749 -0.8916 32 1 1.7221 -7.8754 0.8884 33 1 4.1118 -8.5388 0.8863 34 1 4.1103 -8.5381 -0.8937 35 1 2.2865 -10.2641 -0.8459 36 1 4.8000 -10.9977 0.7234 37 1 4.6814 -10.9090 -1.0510 38 1 4.4199 -13.2509 -0.1570 39 1 2.9956 -12.6879 -1.0688 40 1 1.7423 -13.0986 3.5356 41 1 0.1989 -15.1115 3.5356 42 1 1.1893 -15.8709 2.1778 43 1 3.2446 -15.8485 3.6646 44 1 2.2539 -15.0890 5.0224 45 1 0.8972 -11.9078 0.4945 46 1 1.1942 -12.0518 2.2462 47 1 2.9003 -10.2871 2.1444 48 1 1.3984 -9.6809 1.4045 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499743633.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:37 Heat of formation + Delta-G solvation = -63.835542 kcal Electronic energy + Delta-G solvation = -26135.034044 eV Core-core repulsion = 22316.223446 eV Total energy + Delta-G solvation = -3818.810599 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.81086 -39.30338 -38.46980 -36.52610 -35.52833 -33.64329 -32.44241 -31.69380 -30.37919 -28.60986 -26.09609 -25.47658 -24.23760 -23.70680 -22.89398 -21.89756 -20.83302 -20.21093 -19.23785 -18.01190 -17.82779 -16.49422 -16.27482 -15.95508 -15.91531 -15.68260 -15.07548 -14.86032 -14.81806 -14.55439 -14.34265 -14.14028 -13.92212 -13.63231 -13.34492 -13.08962 -12.89414 -12.69105 -12.56530 -12.11813 -12.06156 -12.00445 -11.73971 -11.52038 -11.33729 -11.08405 -11.06777 -11.03269 -10.98959 -10.87756 -10.76904 -10.69361 -10.14167 -9.81857 -9.42101 -9.09255 -9.07608 -8.88440 -8.24681 -6.51453 -6.23243 -3.93734 2.07816 2.50910 3.02647 3.08737 3.20474 3.27319 3.32007 3.38058 3.69832 3.97064 4.18344 4.19062 4.30626 4.31911 4.37702 4.42743 4.56293 4.62421 4.79920 4.84345 4.95556 5.02023 5.09785 5.12143 5.12332 5.19092 5.22996 5.24988 5.33478 5.40424 5.42701 5.48956 5.54171 5.57430 5.62742 5.65713 5.67072 5.79197 5.88002 5.93531 6.02533 6.11371 6.12640 6.61153 6.95691 7.58547 7.69554 7.77144 8.34052 8.60154 9.22335 10.84255 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030391 B = 0.001522 C = 0.001487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.097392 B =18397.312180 C =18830.577518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.740 5.740 14 C 0.120 3.880 15 C -0.126 4.126 16 C -0.084 4.084 17 C -0.128 4.128 18 C 0.111 3.889 19 N -0.608 5.608 20 C 0.545 3.455 21 O -0.545 6.545 22 C -0.198 4.198 23 C -0.151 4.151 24 C -0.148 4.148 25 C 0.106 3.894 26 C -0.136 4.136 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.398 0.602 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.126 0.874 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.103 0.897 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.069 0.931 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.884 -29.090 3.644 30.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.395 5.395 14 C -0.004 4.004 15 C -0.164 4.164 16 C -0.103 4.103 17 C -0.166 4.166 18 C -0.012 4.012 19 N -0.341 5.341 20 C 0.334 3.666 21 O -0.423 6.423 22 C -0.219 4.219 23 C -0.189 4.189 24 C -0.185 4.185 25 C -0.017 4.017 26 C -0.174 4.174 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.231 0.769 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.144 0.856 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.091 0.909 46 H 0.107 0.893 47 H 0.088 0.912 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.194 -29.728 3.508 30.381 hybrid contribution 2.365 1.617 -0.025 2.865 sum 7.559 -28.111 3.482 29.317 Atomic orbital electron populations 1.70029 1.05955 1.27348 1.46948 1.24994 0.95026 0.99037 0.94526 0.86114 0.79582 0.81871 0.77910 1.19625 1.20558 1.20558 1.22914 0.94952 0.91652 1.58850 0.90874 1.85389 1.04990 0.96361 1.96713 1.23532 1.06549 0.95460 1.04901 1.20310 0.86536 0.86322 0.75136 1.90700 1.15386 1.85654 1.47563 1.46019 1.09919 1.05617 1.77929 1.21336 0.96125 0.80655 1.02317 1.21834 0.97908 0.93675 1.02955 1.21073 0.97100 0.93803 0.98290 1.21968 0.97835 0.93826 1.02999 1.21619 0.95282 0.97282 0.86971 1.48046 1.32522 1.27383 1.26112 1.19682 0.83850 0.80110 0.82953 1.90682 1.32336 1.45111 1.74127 1.22246 1.04702 0.95839 0.99136 1.22938 0.95186 0.97906 1.02841 1.22966 0.99873 0.98634 0.97062 1.21939 0.88619 0.88609 1.02533 1.22176 1.01068 0.96027 0.98170 0.92232 0.89251 0.89251 0.76877 0.91741 0.91533 0.91184 0.91020 0.90385 0.91349 0.90396 0.88979 0.91353 0.85599 0.87632 0.88298 0.87451 0.87815 0.90869 0.89322 0.91178 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 8 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 11 C 0.53 9.70 7.85 -10.99 -0.09 9.61 16 12 O -0.52 -11.60 15.86 5.55 0.09 -11.51 16 13 N -0.74 -9.36 5.56 -60.30 -0.33 -9.70 16 14 C 0.12 1.24 5.43 -4.04 -0.02 1.22 16 15 C -0.13 -0.86 4.80 -26.73 -0.13 -0.99 16 16 C -0.08 -0.50 2.15 -90.58 -0.19 -0.70 16 17 C -0.13 -0.76 5.36 -26.61 -0.14 -0.90 16 18 C 0.11 0.78 6.43 -3.71 -0.02 0.76 16 19 N -0.61 -4.56 2.97 -172.50 -0.51 -5.08 16 20 C 0.55 5.10 7.48 -10.98 -0.08 5.02 16 21 O -0.54 -7.05 15.67 5.56 0.09 -6.96 16 22 C -0.20 -1.30 5.12 -91.77 -0.47 -1.77 16 23 C -0.15 -0.81 10.24 -26.73 -0.27 -1.09 16 24 C -0.15 -0.91 10.04 -26.73 -0.27 -1.18 16 25 C 0.11 0.58 6.37 -3.48 -0.02 0.56 16 26 C -0.14 -0.80 5.16 -26.38 -0.14 -0.94 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 29 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 30 H 0.40 3.87 8.47 -40.82 -0.35 3.52 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.74 6.54 -51.93 -0.34 0.40 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.79 7.01 -51.93 -0.36 0.42 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.13 0.61 6.58 -51.93 -0.34 0.27 16 41 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.11 0.82 7.67 -51.93 -0.40 0.43 16 44 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.09 0.38 5.52 -51.93 -0.29 0.09 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.08 0.52 6.50 -51.93 -0.34 0.18 16 LS Contribution 400.68 15.07 6.04 6.04 Total: -1.00 -36.46 400.68 -10.44 -46.90 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -7.88 Total: -0.64 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -1.43 Total: -6.14 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: -0.11 Total: -40.07 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.18 Total: -18.47 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.46 -10.44 -46.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499743633.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.936 kcal (2) G-P(sol) polarization free energy of solvation -36.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds