Wall clock time and date at job start Sat Apr 11 2020 06:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 119.99901 * 2 1 4 4 H 1.48507 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47318 * 299.99362 * 3 2 1 6 6 H 1.48498 * 109.47515 * 60.00014 * 3 2 1 7 7 C 1.38800 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00087 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99927 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99739 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46814 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00465 * 0.02562 * 11 10 9 13 13 N 1.34782 * 120.00131 * 179.97438 * 11 10 9 14 14 C 1.47131 * 121.05842 * 0.02562 * 13 11 10 15 15 C 1.53224 * 108.72661 * 127.69784 * 14 13 11 16 16 O 1.43118 * 109.35133 * 54.18550 * 15 14 13 17 17 C 1.42364 * 113.99098 * 300.18689 * 16 15 14 18 18 C 1.52952 * 114.25947 * 285.22380 * 17 16 15 19 19 N 1.47581 * 87.85317 * 220.30642 * 18 17 16 20 20 C 1.46902 * 110.99869 * 138.24796 * 19 18 17 21 21 C 1.53001 * 109.47508 * 189.99749 * 20 19 18 22 22 C 1.52994 * 109.47558 * 180.02562 * 21 20 19 23 23 C 1.52997 * 117.49560 * 243.62405 * 22 21 20 24 24 C 1.52995 * 117.50127 * 175.00007 * 22 21 20 25 25 C 1.47574 * 87.96012 * 26.50589 * 19 18 17 26 26 C 1.47354 * 121.06673 * 180.02562 * 13 11 10 27 27 H 0.96998 * 119.99607 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47165 * 59.99920 * 10 9 7 29 29 H 1.09001 * 109.46988 * 299.99808 * 10 9 7 30 30 H 1.09003 * 109.59206 * 247.46421 * 14 13 11 31 31 H 1.08998 * 109.59977 * 7.91917 * 14 13 11 32 32 H 1.09009 * 109.48910 * 174.14786 * 15 14 13 33 33 H 1.09001 * 109.49145 * 294.22127 * 15 14 13 34 34 H 1.09002 * 113.50315 * 105.54368 * 18 17 16 35 35 H 1.08997 * 113.49641 * 335.06638 * 18 17 16 36 36 H 1.08996 * 109.46989 * 310.00069 * 20 19 18 37 37 H 1.09003 * 109.46852 * 69.99719 * 20 19 18 38 38 H 1.09002 * 109.46851 * 300.00046 * 21 20 19 39 39 H 1.09001 * 109.46504 * 59.99638 * 21 20 19 40 40 H 1.08997 * 115.55005 * 29.32467 * 22 21 20 41 41 H 1.08997 * 117.50705 * 359.97438 * 23 22 21 42 42 H 1.09007 * 117.49900 * 145.01985 * 23 22 21 43 43 H 1.08996 * 117.50447 * 214.97702 * 24 22 21 44 44 H 1.09006 * 117.49551 * 359.97438 * 24 22 21 45 45 H 1.09004 * 113.49921 * 88.18399 * 25 19 18 46 46 H 1.08993 * 113.50696 * 218.65880 * 25 19 18 47 47 H 1.09004 * 109.74785 * 108.65414 * 26 13 11 48 48 H 1.09001 * 109.78733 * 347.95609 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8917 2.3964 -1.2126 6 1 1.8916 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0021 11 6 1.9874 -5.3027 0.0030 12 8 0.7911 -5.5023 0.0021 13 7 2.8441 -6.3432 0.0037 14 6 4.2996 -6.1280 0.0042 15 6 4.9155 -6.9335 1.1530 16 8 4.5155 -8.3029 1.0398 17 6 3.1065 -8.5004 1.0896 18 6 2.5008 -8.3563 2.4867 19 7 1.6385 -9.5118 2.1714 20 6 1.5382 -10.4225 3.3197 21 6 0.8512 -11.7185 2.8843 22 6 0.7462 -12.6668 4.0803 23 6 1.5066 -13.9920 3.9999 24 6 -0.0185 -13.9765 3.8785 25 6 2.6789 -9.9635 1.2274 26 6 2.3531 -7.7325 0.0040 27 1 -0.4849 0.8401 -0.0004 28 1 3.1238 -3.7309 0.8925 29 1 3.1251 -3.7317 -0.8875 30 1 4.7191 -6.4642 -0.9440 31 1 4.5125 -5.0684 0.1454 32 1 6.0024 -6.8666 1.1022 33 1 4.5702 -6.5312 2.1053 34 1 1.9483 -7.4272 2.6273 35 1 3.2110 -8.5504 3.2904 36 1 2.5372 -10.6484 3.6926 37 1 0.9542 -9.9491 4.1090 38 1 -0.1478 -11.4926 2.5115 39 1 1.4353 -12.1918 2.0950 40 1 0.6731 -12.1865 5.0561 41 1 2.0813 -14.1885 3.0949 42 1 1.9340 -14.3839 4.9230 43 1 -0.5945 -14.3581 4.7215 44 1 -0.4472 -14.1623 2.8936 45 1 3.4384 -10.5957 1.6875 46 1 2.2766 -10.3890 0.3081 47 1 2.5401 -8.1894 -0.9678 48 1 1.2843 -7.7461 0.2176 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502408477.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:59 Heat of formation + Delta-G solvation = -9.562215 kcal Electronic energy + Delta-G solvation = -27321.594961 eV Core-core repulsion = 23505.137830 eV Total energy + Delta-G solvation = -3816.457131 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.40224 -39.27672 -38.07322 -37.34936 -34.67956 -32.77263 -32.44765 -30.37568 -29.48829 -27.39161 -26.36245 -25.62006 -25.17070 -23.63024 -22.76504 -21.97091 -20.74781 -19.77773 -18.97673 -17.76672 -17.26177 -16.81464 -16.33879 -16.01618 -15.74449 -15.58770 -15.11549 -14.82572 -14.79859 -14.61707 -14.33566 -13.99994 -13.81559 -13.50290 -13.37528 -13.19060 -12.65728 -12.64170 -12.33780 -12.06420 -11.94930 -11.88863 -11.72228 -11.51466 -11.32170 -11.20100 -11.08783 -11.03486 -10.79827 -10.71369 -10.52189 -10.23867 -10.09238 -9.81919 -9.39693 -9.25061 -9.09300 -8.51819 -8.24499 -6.52342 -6.23568 -3.94383 2.78350 3.00414 3.20115 3.21035 3.25419 3.29375 3.40882 3.52703 3.72307 4.10397 4.17949 4.30304 4.38536 4.50963 4.56538 4.62271 4.73798 4.78798 4.91122 4.93165 4.96934 5.00999 5.10307 5.11691 5.17149 5.25917 5.29270 5.33443 5.37203 5.45435 5.50074 5.52805 5.58888 5.60326 5.64230 5.69899 5.72619 5.78130 5.83193 5.86393 5.91279 6.04377 6.06611 6.45996 6.68707 6.90045 7.47154 7.57869 8.33262 8.50148 9.21792 10.83868 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020820 B = 0.002106 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.558692 B =13289.747254 C =14043.395891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.151 4.151 11 C 0.537 3.463 12 O -0.510 6.510 13 N -0.624 5.624 14 C 0.073 3.927 15 C 0.048 3.952 16 O -0.364 6.364 17 C 0.074 3.926 18 C -0.020 4.020 19 N -0.462 5.462 20 C 0.026 3.974 21 C -0.084 4.084 22 C -0.152 4.152 23 C -0.183 4.183 24 C -0.180 4.180 25 C 0.019 3.981 26 C 0.119 3.881 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.073 0.927 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.536 -24.986 5.876 27.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.301 4.301 11 C 0.325 3.675 12 O -0.383 6.383 13 N -0.362 5.362 14 C -0.050 4.050 15 C -0.030 4.030 16 O -0.282 6.282 17 C 0.033 3.967 18 C -0.149 4.149 19 N -0.185 5.185 20 C -0.103 4.103 21 C -0.121 4.121 22 C -0.171 4.171 23 C -0.220 4.220 24 C -0.217 4.217 25 C -0.110 4.110 26 C -0.004 4.004 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.099 0.901 46 H 0.114 0.886 47 H 0.092 0.908 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.000 -25.219 5.654 26.776 hybrid contribution 2.770 1.300 0.494 3.099 sum 9.770 -23.919 6.148 26.559 Atomic orbital electron populations 1.70028 1.05950 1.27372 1.46843 1.24997 0.95031 0.99041 0.94528 0.86116 0.79564 0.81881 0.77921 1.19621 1.20544 1.20568 1.22898 0.94912 0.91611 1.58944 0.90887 1.85444 1.04802 0.96305 1.96686 1.23553 1.06608 0.95280 1.04681 1.20347 0.86172 0.86013 0.74981 1.90713 1.15000 1.85066 1.47520 1.48197 1.06200 1.05669 1.76090 1.22368 0.80744 1.02276 0.99655 1.22997 1.00230 0.81892 0.97837 1.87885 1.20652 1.25621 1.94037 1.22939 0.81874 0.96780 0.95138 1.24380 0.95843 0.97350 0.97341 1.68961 1.33334 1.05380 1.10800 1.22658 1.00045 0.93611 0.93979 1.21094 1.01768 0.93404 0.95875 1.22296 1.05173 0.89509 1.00130 1.23047 0.94605 1.01178 1.03138 1.22958 0.94370 1.01209 1.03155 1.23897 0.93602 0.94367 0.99140 1.21719 1.00900 0.80654 0.97156 0.92210 0.89321 0.89201 0.90525 0.88162 0.87506 0.92360 0.88877 0.90524 0.93807 0.90187 0.90465 0.91786 0.87787 0.88842 0.89002 0.88865 0.88717 0.90096 0.88608 0.90848 0.86767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16 8 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -3.02 4.52 36.00 0.16 -2.86 16 11 C 0.54 10.20 7.73 -10.98 -0.08 10.11 16 12 O -0.51 -11.68 15.36 5.55 0.09 -11.59 16 13 N -0.62 -9.01 3.03 -172.45 -0.52 -9.53 16 14 C 0.07 0.80 6.50 -3.58 -0.02 0.77 16 15 C 0.05 0.45 6.91 37.27 0.26 0.71 16 16 O -0.36 -3.97 10.54 -35.23 -0.37 -4.34 16 17 C 0.07 0.81 1.35 -90.70 -0.12 0.69 16 18 C -0.02 -0.23 6.67 -7.26 -0.05 -0.27 16 19 N -0.46 -4.85 6.22 -244.34 -1.52 -6.37 16 20 C 0.03 0.22 4.78 -3.82 -0.02 0.20 16 21 C -0.08 -0.65 5.60 -26.73 -0.15 -0.80 16 22 C -0.15 -1.06 5.74 -90.63 -0.52 -1.58 16 23 C -0.18 -1.15 10.18 -26.73 -0.27 -1.42 16 24 C -0.18 -1.16 10.25 -26.73 -0.27 -1.43 16 25 C 0.02 0.18 6.43 -7.21 -0.05 0.13 16 26 C 0.12 1.55 5.76 -3.66 -0.02 1.53 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.09 1.63 7.69 -51.92 -0.40 1.23 16 29 H 0.09 1.67 7.99 -51.92 -0.41 1.25 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.10 1.05 6.03 -51.93 -0.31 0.74 16 32 H 0.11 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.06 0.57 7.88 -51.93 -0.41 0.16 16 34 H 0.09 1.25 8.11 -51.93 -0.42 0.83 16 35 H 0.08 0.78 7.77 -51.93 -0.40 0.37 16 36 H 0.04 0.36 7.57 -51.93 -0.39 -0.04 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.48 7.40 -51.93 -0.38 0.10 16 40 H 0.10 0.70 8.07 -51.93 -0.42 0.28 16 41 H 0.09 0.57 8.03 -51.93 -0.42 0.15 16 42 H 0.09 0.52 8.14 -51.92 -0.42 0.09 16 43 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.69 7.71 -51.93 -0.40 0.29 16 46 H 0.10 0.81 8.11 -51.93 -0.42 0.39 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.11 1.74 6.93 -51.93 -0.36 1.38 16 LS Contribution 397.75 15.07 5.99 5.99 Total: -1.00 -33.70 397.75 -11.88 -45.58 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -8.08 Total: 0.19 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -0.96 Total: -7.05 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: -1.31 Total: -41.20 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.29 Total: -15.94 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.70 -11.88 -45.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502408477.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.019 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds