Wall clock time and date at job start Sat Apr 11 2020 06:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 119.99901 * 2 1 4 4 H 1.48507 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47318 * 299.99362 * 3 2 1 6 6 H 1.48498 * 109.47515 * 60.00014 * 3 2 1 7 7 C 1.38800 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00087 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99927 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99739 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46814 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00465 * 0.02562 * 11 10 9 13 13 N 1.34782 * 120.00131 * 179.97438 * 11 10 9 14 14 C 1.47131 * 121.05842 * 0.02562 * 13 11 10 15 15 C 1.53224 * 108.72661 * 127.69784 * 14 13 11 16 16 O 1.43118 * 109.35133 * 54.18550 * 15 14 13 17 17 C 1.42364 * 113.99098 * 300.18689 * 16 15 14 18 18 C 1.52952 * 114.25947 * 285.22380 * 17 16 15 19 19 N 1.47581 * 87.85317 * 220.30642 * 18 17 16 20 20 C 1.46902 * 110.99869 * 138.24796 * 19 18 17 21 21 C 1.53001 * 109.47508 * 189.99749 * 20 19 18 22 22 C 1.52994 * 109.47558 * 180.02562 * 21 20 19 23 23 C 1.52997 * 117.49560 * 243.62405 * 22 21 20 24 24 C 1.52995 * 117.50127 * 175.00007 * 22 21 20 25 25 C 1.47574 * 87.96012 * 26.50589 * 19 18 17 26 26 C 1.47354 * 121.06673 * 180.02562 * 13 11 10 27 27 H 0.96998 * 119.99607 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47165 * 59.99920 * 10 9 7 29 29 H 1.09001 * 109.46988 * 299.99808 * 10 9 7 30 30 H 1.09003 * 109.59206 * 247.46421 * 14 13 11 31 31 H 1.08998 * 109.59977 * 7.91917 * 14 13 11 32 32 H 1.09009 * 109.48910 * 174.14786 * 15 14 13 33 33 H 1.09001 * 109.49145 * 294.22127 * 15 14 13 34 34 H 1.09002 * 113.50315 * 105.54368 * 18 17 16 35 35 H 1.08997 * 113.49641 * 335.06638 * 18 17 16 36 36 H 1.08996 * 109.46989 * 310.00069 * 20 19 18 37 37 H 1.09003 * 109.46852 * 69.99719 * 20 19 18 38 38 H 1.09002 * 109.46851 * 300.00046 * 21 20 19 39 39 H 1.09001 * 109.46504 * 59.99638 * 21 20 19 40 40 H 1.08997 * 115.55005 * 29.32467 * 22 21 20 41 41 H 1.08997 * 117.50705 * 359.97438 * 23 22 21 42 42 H 1.09007 * 117.49900 * 145.01985 * 23 22 21 43 43 H 1.08996 * 117.50447 * 214.97702 * 24 22 21 44 44 H 1.09006 * 117.49551 * 359.97438 * 24 22 21 45 45 H 1.09004 * 113.49921 * 88.18399 * 25 19 18 46 46 H 1.08993 * 113.50696 * 218.65880 * 25 19 18 47 47 H 1.09004 * 109.74785 * 108.65414 * 26 13 11 48 48 H 1.09001 * 109.78733 * 347.95609 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8917 2.3964 -1.2126 6 1 1.8916 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0021 11 6 1.9874 -5.3027 0.0030 12 8 0.7911 -5.5023 0.0021 13 7 2.8441 -6.3432 0.0037 14 6 4.2996 -6.1280 0.0042 15 6 4.9155 -6.9335 1.1530 16 8 4.5155 -8.3029 1.0398 17 6 3.1065 -8.5004 1.0896 18 6 2.5008 -8.3563 2.4867 19 7 1.6385 -9.5118 2.1714 20 6 1.5382 -10.4225 3.3197 21 6 0.8512 -11.7185 2.8843 22 6 0.7462 -12.6668 4.0803 23 6 1.5066 -13.9920 3.9999 24 6 -0.0185 -13.9765 3.8785 25 6 2.6789 -9.9635 1.2274 26 6 2.3531 -7.7325 0.0040 27 1 -0.4849 0.8401 -0.0004 28 1 3.1238 -3.7309 0.8925 29 1 3.1251 -3.7317 -0.8875 30 1 4.7191 -6.4642 -0.9440 31 1 4.5125 -5.0684 0.1454 32 1 6.0024 -6.8666 1.1022 33 1 4.5702 -6.5312 2.1053 34 1 1.9483 -7.4272 2.6273 35 1 3.2110 -8.5504 3.2904 36 1 2.5372 -10.6484 3.6926 37 1 0.9542 -9.9491 4.1090 38 1 -0.1478 -11.4926 2.5115 39 1 1.4353 -12.1918 2.0950 40 1 0.6731 -12.1865 5.0561 41 1 2.0813 -14.1885 3.0949 42 1 1.9340 -14.3839 4.9230 43 1 -0.5945 -14.3581 4.7215 44 1 -0.4472 -14.1623 2.8936 45 1 3.4384 -10.5957 1.6875 46 1 2.2766 -10.3890 0.3081 47 1 2.5401 -8.1894 -0.9678 48 1 1.2843 -7.7461 0.2176 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502408477.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:58 Heat of formation + Delta-G solvation = -32.896585 kcal Electronic energy + Delta-G solvation = -27322.606815 eV Core-core repulsion = 23505.137830 eV Total energy + Delta-G solvation = -3817.468985 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.31644 -40.54111 -38.87283 -38.11912 -35.88155 -34.59024 -33.54352 -31.51425 -30.68541 -28.39116 -27.68239 -27.18527 -26.24778 -24.51264 -23.26301 -22.75398 -21.31810 -21.03586 -20.01126 -19.59342 -18.33293 -18.06463 -17.26457 -16.93241 -16.87430 -16.68073 -16.54297 -16.27777 -15.85978 -15.58910 -15.27430 -15.21304 -14.79424 -14.64250 -14.49698 -14.25887 -14.17247 -13.53885 -13.46930 -13.17431 -13.16172 -12.93980 -12.91705 -12.59316 -12.41036 -12.37816 -12.26354 -12.07719 -11.92260 -11.74589 -11.67235 -11.16534 -11.11324 -11.00215 -10.89867 -10.77444 -10.26993 -10.02349 -9.67451 -8.68534 -8.35233 -6.13833 1.21730 1.41445 1.43592 1.51131 1.56104 1.94708 2.26228 2.43329 2.85114 2.97189 2.99190 3.19182 3.27156 3.45138 3.66162 3.67413 3.87875 3.91707 4.01796 4.04256 4.08744 4.16582 4.20739 4.26623 4.28114 4.35694 4.40361 4.43758 4.53547 4.56523 4.62192 4.66458 4.68813 4.74139 4.79697 4.81058 4.86879 4.99085 5.04342 5.13436 5.21772 5.27065 5.33452 5.41355 5.41656 5.93061 6.05296 6.17148 6.19988 7.05625 7.06328 8.74249 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020820 B = 0.002106 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.558692 B =13289.747254 C =14043.395891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.085 0.915 9 S -0.152 6.152 10 C -0.123 4.123 11 C 0.536 3.464 12 O -0.561 6.561 13 N -0.613 5.613 14 C 0.065 3.935 15 C 0.048 3.952 16 O -0.364 6.364 17 C 0.078 3.922 18 C -0.017 4.017 19 N -0.481 5.481 20 C 0.029 3.971 21 C -0.076 4.076 22 C -0.161 4.161 23 C -0.177 4.177 24 C -0.183 4.183 25 C 0.030 3.970 26 C 0.117 3.883 27 H 0.271 0.729 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.142 0.858 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.105 0.895 47 H 0.090 0.910 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.913 -25.957 6.004 29.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.178 1.178 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.692 4.692 8 H 0.103 0.897 9 S 0.075 5.925 10 C -0.274 4.274 11 C 0.324 3.676 12 O -0.439 6.439 13 N -0.348 5.348 14 C -0.057 4.057 15 C -0.029 4.029 16 O -0.281 6.281 17 C 0.037 3.963 18 C -0.146 4.146 19 N -0.205 5.205 20 C -0.099 4.099 21 C -0.114 4.114 22 C -0.180 4.180 23 C -0.214 4.214 24 C -0.220 4.220 25 C -0.099 4.099 26 C -0.005 4.005 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.159 0.841 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.123 0.877 47 H 0.108 0.892 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.433 -26.233 5.784 28.818 hybrid contribution 1.763 1.470 0.458 2.341 sum 12.196 -24.762 6.242 28.300 Atomic orbital electron populations 1.70196 1.08025 1.28549 1.48057 1.26146 0.95965 1.03372 0.93746 0.84893 0.78697 0.76254 0.78023 1.17810 1.19994 1.20019 1.23231 0.95385 0.91796 1.58772 0.89712 1.85660 1.10486 0.99311 1.97025 1.23359 1.03535 0.93971 1.06527 1.20169 0.85904 0.86538 0.75014 1.90696 1.17175 1.85671 1.50320 1.48168 1.07485 1.05224 1.73907 1.22731 0.78113 1.03302 1.01561 1.23160 1.02033 0.80904 0.96755 1.87900 1.19968 1.26392 1.93884 1.22801 0.81917 0.97654 0.93957 1.24306 0.95834 0.96477 0.98017 1.68952 1.33938 1.05740 1.11865 1.22651 1.00561 0.93517 0.93214 1.21002 1.00894 0.93140 0.96346 1.22275 1.06242 0.89707 0.99756 1.23113 0.94435 1.00157 1.03714 1.23029 0.94815 1.00733 1.03445 1.23892 0.93413 0.93294 0.99299 1.21793 0.99819 0.80016 0.98894 0.92013 0.87257 0.87183 0.88445 0.87517 0.84051 0.92880 0.91989 0.89259 0.92768 0.90968 0.91873 0.91255 0.87765 0.88435 0.88226 0.88279 0.88734 0.88545 0.87690 0.89230 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.08 13.22 21.65 0.29 -55.79 16 2 C 0.01 0.70 5.49 84.86 0.47 1.17 16 3 Si 1.00 43.29 29.55 68.60 2.03 45.32 16 4 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.54 -30.84 9.50 67.95 0.65 -30.20 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.48 20.57 -56.49 -1.16 -9.64 16 10 C -0.12 -4.89 4.52 71.24 0.32 -4.57 16 11 C 0.54 20.59 7.73 87.66 0.68 21.27 16 12 O -0.56 -26.95 15.36 -3.04 -0.05 -26.99 16 13 N -0.61 -17.12 3.03 -817.89 -2.48 -19.59 16 14 C 0.07 1.23 6.50 86.33 0.56 1.79 16 15 C 0.05 0.76 6.91 72.06 0.50 1.25 16 16 O -0.36 -6.82 10.54 -148.98 -1.57 -8.39 16 17 C 0.08 1.60 1.35 -10.84 -0.01 1.59 16 18 C -0.02 -0.38 6.67 83.70 0.56 0.18 16 19 N -0.48 -9.91 6.22 -927.62 -5.77 -15.68 16 20 C 0.03 0.48 4.78 86.30 0.41 0.89 16 21 C -0.08 -1.12 5.60 30.59 0.17 -0.94 16 22 C -0.16 -2.08 5.74 -10.80 -0.06 -2.14 16 23 C -0.18 -1.93 10.18 30.59 0.31 -1.62 16 24 C -0.18 -2.16 10.25 30.59 0.31 -1.84 16 25 C 0.03 0.50 6.43 83.74 0.54 1.04 16 26 C 0.12 3.00 5.76 86.16 0.50 3.49 16 27 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 28 H 0.11 3.88 7.69 -2.39 -0.02 3.86 16 29 H 0.11 3.92 7.99 -2.39 -0.02 3.90 16 30 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.11 1.90 6.03 -2.39 -0.01 1.89 16 32 H 0.14 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.05 0.91 7.88 -2.39 -0.02 0.89 16 34 H 0.06 1.74 8.11 -2.39 -0.02 1.72 16 35 H 0.09 1.69 7.77 -2.39 -0.02 1.68 16 36 H 0.05 0.79 7.57 -2.39 -0.02 0.77 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 0.93 7.40 -2.39 -0.02 0.92 16 40 H 0.10 1.33 8.07 -2.39 -0.02 1.31 16 41 H 0.10 0.98 8.03 -2.39 -0.02 0.96 16 42 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 45 H 0.10 1.35 7.71 -2.39 -0.02 1.33 16 46 H 0.10 1.57 8.11 -2.39 -0.02 1.55 16 47 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.09 2.75 6.93 -2.39 -0.02 2.73 16 Total: -1.00 -76.05 397.75 -1.88 -77.93 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.94 Total: 21.47 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 5.90 Total: -8.64 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -7.96 Total: -91.06 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -1.62 Total: -35.38 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.64 kcal Total: -76.05 -1.88 -77.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502408477.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.034 kcal (2) G-P(sol) polarization free energy of solvation -76.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds