Wall clock time and date at job start Sat Apr 11 2020 06:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47262 * 2 1 4 4 N 1.28436 * 125.18862 * 84.98226 * 3 2 1 5 5 C 1.30830 * 110.98231 * 179.97438 * 4 3 2 6 6 C 1.39804 * 107.87618 * 0.02562 * 5 4 3 7 7 Cl 1.73603 * 127.33494 * 179.97438 * 6 5 4 8 8 C 1.36741 * 125.18615 * 264.95549 * 3 2 1 9 9 C 1.47026 * 126.90804 * 359.97438 * 8 3 2 10 10 O 1.21646 * 119.99828 * 99.20507 * 9 8 3 11 11 N 1.34775 * 120.00134 * 279.21092 * 9 8 3 12 12 C 1.47424 * 125.64950 * 5.25234 * 11 9 8 13 13 C 1.54685 * 104.94230 * 204.07639 * 12 11 9 14 14 C 1.55152 * 101.67733 * 323.27470 * 13 12 11 15 15 C 1.47028 * 125.64873 * 185.56126 * 11 9 8 16 16 H 1.08998 * 109.88035 * 59.48181 * 15 11 9 17 17 C 1.53002 * 109.87846 * 298.31943 * 15 11 9 18 18 N 1.46500 * 109.46714 * 176.50776 * 17 15 11 19 19 C 1.46498 * 119.99847 * 275.44933 * 18 17 15 20 20 C 1.36935 * 120.00413 * 95.44920 * 18 17 15 21 21 H 1.08007 * 119.99849 * 3.38617 * 20 18 17 22 22 C 1.38813 * 120.00770 * 183.38528 * 20 18 17 23 23 N 1.31619 * 119.99305 * 5.45788 * 22 20 18 24 24 Si 1.86790 * 120.00442 * 185.45719 * 22 20 18 25 25 H 1.48501 * 109.47246 * 60.00271 * 24 22 20 26 26 H 1.48508 * 109.47184 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47462 * 300.00143 * 24 22 20 28 28 H 1.08991 * 109.47290 * 304.99163 * 1 2 3 29 29 H 1.09006 * 109.46751 * 64.98583 * 1 2 3 30 30 H 1.08995 * 109.47297 * 184.97825 * 1 2 3 31 31 H 1.08996 * 109.47466 * 239.99651 * 2 1 3 32 32 H 1.09002 * 109.46397 * 119.99747 * 2 1 3 33 33 H 1.08002 * 126.06202 * 179.97438 * 5 4 3 34 34 H 1.09007 * 110.36241 * 323.00615 * 12 11 9 35 35 H 1.09000 * 110.36627 * 85.32251 * 12 11 9 36 36 H 1.08999 * 111.10255 * 205.10644 * 13 12 11 37 37 H 1.09002 * 110.85092 * 81.33263 * 13 12 11 38 38 H 1.09002 * 110.72435 * 276.97419 * 14 13 12 39 39 H 1.09001 * 110.72566 * 153.70559 * 14 13 12 40 40 H 1.08997 * 109.47340 * 296.50558 * 17 15 11 41 41 H 1.08999 * 109.47393 * 56.50589 * 17 15 11 42 42 H 1.08998 * 109.47723 * 0.31532 * 19 18 17 43 43 H 1.09005 * 109.47067 * 120.31820 * 19 18 17 44 44 H 1.09003 * 109.47088 * 240.31340 * 19 18 17 45 45 H 0.97006 * 119.99849 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1786 2.1096 1.0456 5 6 2.6283 3.2958 0.7258 6 6 2.7730 3.3396 -0.6640 7 17 3.3340 4.6738 -1.6227 8 6 2.3737 2.0913 -1.1132 9 6 2.3395 1.6240 -2.5068 10 8 1.4063 1.9253 -3.2266 11 7 3.3420 0.8616 -2.9867 12 6 4.4719 0.3336 -2.2007 13 6 5.5985 0.0938 -3.2332 14 6 4.7953 -0.4001 -4.4654 15 6 3.4932 0.4242 -4.3823 16 1 3.5616 1.2925 -5.0376 17 6 2.3006 -0.4445 -4.7874 18 7 2.4183 -0.8062 -6.2021 19 6 1.9333 0.1118 -7.2357 20 6 2.9816 -2.0024 -6.5585 21 1 3.2893 -2.7029 -5.7961 22 6 3.1573 -2.3148 -7.8995 23 7 2.8828 -1.4201 -8.8250 24 14 3.7833 -4.0048 -8.3907 25 1 2.8414 -5.0432 -7.9009 26 1 3.8823 -4.0853 -9.8702 27 1 5.1232 -4.2298 -7.7914 28 1 -0.3633 0.5893 0.8418 29 1 -0.3633 0.4346 -0.9313 30 1 -0.3633 -1.0237 0.0892 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 2.8481 4.0991 1.4135 34 1 4.7889 1.0628 -1.4551 35 1 4.1943 -0.6048 -1.7206 36 1 6.2921 -0.6722 -2.8864 37 1 6.1244 1.0221 -3.4562 38 1 4.5826 -1.4661 -4.3852 39 1 5.3319 -0.1813 -5.3886 40 1 2.2879 -1.3499 -4.1807 41 1 1.3762 0.1112 -4.6301 42 1 1.5263 1.0067 -6.7649 43 1 2.7586 0.3894 -7.8914 44 1 1.1541 -0.3778 -7.8198 45 1 3.0052 -1.6385 -9.7622 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505432167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:11 Heat of formation + Delta-G solvation = 77.605278 kcal Electronic energy + Delta-G solvation = -28695.698049 eV Core-core repulsion = 24777.436735 eV Total energy + Delta-G solvation = -3918.261315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.82483 -39.86949 -37.36902 -36.70706 -35.36663 -34.80138 -32.05897 -31.43782 -30.53316 -30.02296 -28.95440 -25.93350 -25.35428 -24.55690 -23.85891 -22.15019 -21.57610 -21.25716 -20.08176 -19.05902 -17.76725 -17.05294 -16.53902 -16.18905 -15.92494 -15.31896 -15.14445 -14.70020 -14.44102 -14.23515 -13.74449 -13.63586 -13.36396 -13.21990 -13.07340 -12.86229 -12.64328 -12.43492 -12.16058 -12.00667 -11.90156 -11.77045 -11.62300 -11.12902 -11.03315 -10.96079 -10.77846 -10.66011 -10.50504 -10.34748 -10.17716 -10.07107 -9.79946 -9.64025 -9.47196 -8.91747 -8.70485 -8.45456 -6.89124 -5.60203 -3.06255 1.30565 1.61699 2.22843 2.30851 2.67078 3.02918 3.37156 3.42845 3.44190 4.15141 4.22798 4.49583 4.57448 4.68476 4.69519 4.82152 4.96965 5.01799 5.06745 5.20693 5.27783 5.40775 5.43492 5.46635 5.60306 5.64391 5.76075 5.79060 5.90505 5.95270 6.01641 6.23449 6.26743 6.39566 6.49715 6.61593 6.75249 6.89331 6.92101 7.53683 7.64274 7.69436 7.74265 7.98187 8.09316 8.40348 9.27931 9.91001 10.35193 11.36392 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.003348 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.905635 B = 8361.776294 C = 8751.537983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.115 3.885 3 N -0.263 5.263 4 N -0.273 5.273 5 C 0.022 3.978 6 C -0.120 4.120 7 Cl -0.021 7.021 8 C 0.006 3.994 9 C 0.597 3.403 10 O -0.506 6.506 11 N -0.596 5.596 12 C 0.098 3.902 13 C -0.136 4.136 14 C -0.105 4.105 15 C 0.113 3.887 16 H 0.073 0.927 17 C 0.149 3.851 18 N -0.604 5.604 19 C 0.166 3.834 20 C -0.243 4.243 21 H 0.072 0.928 22 C -0.005 4.005 23 N -0.916 5.916 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.285 1.285 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.193 0.807 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.044 0.956 41 H 0.051 0.949 42 H -0.006 1.006 43 H 0.058 0.942 44 H 0.028 0.972 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.637 5.844 20.090 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.005 4.005 3 N -0.052 5.052 4 N -0.104 5.104 5 C -0.156 4.156 6 C -0.158 4.158 7 Cl 0.008 6.992 8 C -0.125 4.125 9 C 0.381 3.619 10 O -0.379 6.379 11 N -0.331 5.331 12 C -0.025 4.025 13 C -0.174 4.174 14 C -0.143 4.143 15 C 0.009 3.991 16 H 0.091 0.909 17 C 0.020 3.980 18 N -0.327 5.327 19 C 0.022 3.978 20 C -0.372 4.372 21 H 0.090 0.910 22 C -0.201 4.201 23 N -0.564 5.564 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.212 1.212 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.210 0.790 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.013 0.987 43 H 0.077 0.923 44 H 0.046 0.954 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.721 5.296 20.305 21.055 hybrid contribution 0.764 -0.194 -1.013 1.283 sum 2.484 5.102 19.292 20.109 Atomic orbital electron populations 1.22182 0.92821 1.03966 1.03980 1.22149 0.96761 0.75977 1.05566 1.45771 1.45338 1.12323 1.01738 1.73196 1.19363 1.04234 1.13563 1.23472 1.03867 0.95640 0.92664 1.21207 1.11518 0.90440 0.92612 1.98359 1.87541 1.42688 1.70650 1.21380 1.07911 0.93360 0.89856 1.16423 0.82468 0.78851 0.84176 1.90896 1.33096 1.55877 1.58020 1.48723 1.23452 1.48999 1.11901 1.22311 0.86965 0.98412 0.94856 1.22789 0.96637 1.01938 0.96058 1.22534 0.93829 1.00455 0.97503 1.22912 0.99055 0.98191 0.78945 0.90921 1.21054 0.94717 0.95691 0.86575 1.44000 1.70281 1.19066 0.99311 1.21094 0.98631 0.88618 0.89481 1.19231 1.33607 0.93045 0.91331 0.91002 1.24845 1.01324 0.97956 0.95976 1.70202 1.54173 1.32235 0.99746 0.86300 0.78559 0.84032 0.77409 1.21309 1.21672 1.21166 0.91212 0.91135 0.89619 0.87998 0.87438 0.78976 0.91257 0.91560 0.90067 0.90902 0.89990 0.89715 0.93747 0.93053 0.98738 0.92341 0.95380 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 10.24 37.16 0.38 -1.12 16 2 C 0.11 1.04 6.91 -4.04 -0.03 1.01 16 3 N -0.26 -3.11 3.35 -57.11 -0.19 -3.30 16 4 N -0.27 -3.20 11.89 30.61 0.36 -2.84 16 5 C 0.02 0.24 12.04 -17.39 -0.21 0.03 16 6 C -0.12 -1.56 6.89 -38.88 -0.27 -1.82 16 7 Cl -0.02 -0.27 29.24 -51.86 -1.52 -1.78 16 8 C 0.01 0.08 5.57 -82.00 -0.46 -0.38 16 9 C 0.60 9.75 6.77 -12.70 -0.09 9.66 16 10 O -0.51 -10.18 15.90 5.24 0.08 -10.10 16 11 N -0.60 -9.03 3.07 -164.55 -0.50 -9.53 16 12 C 0.10 1.14 6.72 -2.65 -0.02 1.13 16 13 C -0.14 -1.60 7.07 -24.71 -0.17 -1.78 16 14 C -0.11 -1.67 5.73 -24.90 -0.14 -1.81 16 15 C 0.11 2.02 3.16 -66.95 -0.21 1.81 16 16 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 17 C 0.15 3.08 5.05 -4.04 -0.02 3.06 16 18 N -0.60 -14.94 2.81 -181.12 -0.51 -15.45 16 19 C 0.17 4.26 9.01 59.85 0.54 4.80 16 20 C -0.24 -6.34 8.81 -15.06 -0.13 -6.48 16 21 H 0.07 1.79 7.44 -52.48 -0.39 1.40 16 22 C 0.00 -0.13 5.43 -17.43 -0.09 -0.22 16 23 N -0.92 -26.19 9.49 55.49 0.53 -25.67 16 24 Si 0.91 21.35 29.56 -169.99 -5.02 16.33 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.10 0.94 7.65 -51.93 -0.40 0.54 16 32 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.19 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.07 0.76 7.61 -51.93 -0.39 0.37 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.38 7.04 -51.93 -0.37 1.01 16 39 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 40 H 0.04 0.88 7.88 -51.93 -0.41 0.47 16 41 H 0.05 1.14 6.47 -51.93 -0.34 0.80 16 42 H -0.01 -0.15 7.87 -51.93 -0.41 -0.55 16 43 H 0.06 1.61 6.61 -51.93 -0.34 1.27 16 44 H 0.03 0.77 7.45 -51.93 -0.39 0.39 16 45 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 381.68 15.07 5.75 5.75 Total: -1.00 -31.46 381.68 -8.74 -40.20 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -6.79 Total: -1.51 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -0.92 Total: 7.89 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.31 Total: -56.78 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.08 Total: -10.10 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.52 Total: -1.78 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.46 -8.74 -40.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505432167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.806 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds